Wall clock time and date at job start Mon Mar 30 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09008 * 110.50164 * 2 1 4 4 C 1.54980 * 110.57341 * 122.74905 * 2 1 3 5 5 C 1.54887 * 102.33416 * 155.65414 * 4 2 1 6 6 C 1.51851 * 104.43242 * 322.37916 * 5 4 2 7 7 C 1.33084 * 126.33843 * 203.76929 * 6 5 4 8 8 C 1.46946 * 120.00088 * 0.02562 * 7 6 5 9 9 O 1.21530 * 120.00177 * 359.97438 * 8 7 6 10 10 O 1.34804 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.45199 * 117.00041 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46940 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00091 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00472 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99961 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00659 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99504 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00383 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 60.00633 * 19 17 15 21 21 H 1.48499 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47246 * 300.00583 * 19 17 15 23 23 C 1.51442 * 107.31621 * 24.02795 * 6 5 4 24 24 H 1.08993 * 109.47145 * 297.24253 * 1 2 3 25 25 H 1.08998 * 109.47201 * 57.24992 * 1 2 3 26 26 H 1.09000 * 109.46277 * 177.25015 * 1 2 3 27 27 H 1.09000 * 110.83026 * 37.44260 * 4 2 1 28 28 H 1.08996 * 110.83347 * 273.86921 * 4 2 1 29 29 H 1.08994 * 110.44604 * 203.64337 * 5 4 2 30 30 H 1.08994 * 110.54622 * 81.16554 * 5 4 2 31 31 H 1.08000 * 119.99336 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.47328 * 300.00270 * 11 10 8 33 33 H 1.09003 * 109.46822 * 59.99962 * 11 10 8 34 34 H 0.97008 * 120.00111 * 0.02562 * 14 12 11 35 35 H 0.97006 * 119.99770 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.98378 * 118.75192 * 23 6 5 37 37 H 1.09003 * 109.98992 * 240.05362 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 6 2.0747 -0.7849 1.2203 5 6 3.4816 -1.2150 0.7360 6 6 3.2913 -1.5452 -0.7339 7 6 4.0547 -2.3529 -1.4660 8 6 5.2109 -3.0239 -0.8558 9 8 5.4702 -2.8409 0.3173 10 8 5.9844 -3.8416 -1.5975 11 6 7.1098 -4.4701 -0.9290 12 6 7.8527 -5.3419 -1.9083 13 8 7.4715 -5.4250 -3.0567 14 7 8.9406 -6.0293 -1.5079 15 6 9.6162 -6.8229 -2.3986 16 1 9.2768 -6.8969 -3.4213 17 6 10.7382 -7.5312 -1.9861 18 7 11.1515 -7.4407 -0.7418 19 14 11.6582 -8.6130 -3.1995 20 1 12.1529 -7.7825 -4.3268 21 1 12.8090 -9.2560 -2.5157 22 1 10.7440 -9.6608 -3.7206 23 6 2.0757 -0.7802 -1.2141 24 1 -0.3633 0.4704 0.9136 25 1 -0.3633 0.5559 -0.8643 26 1 -0.3632 -1.0265 -0.0493 27 1 1.4536 -1.6559 1.4295 28 1 2.1466 -0.1395 2.0957 29 1 3.8201 -2.0949 1.2830 30 1 4.1931 -0.3977 0.8535 31 1 3.8244 -2.5152 -2.5086 32 1 7.7801 -3.7011 -0.5453 33 1 6.7465 -5.0807 -0.1024 34 1 9.2453 -5.9632 -0.5893 35 1 11.9345 -7.9354 -0.4537 36 1 2.3602 -0.0883 -2.0068 37 1 1.3187 -1.4743 -1.5790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754196419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:56 Heat of formation + Delta-G solvation = -144.269317 kcal Electronic energy + Delta-G solvation = -19331.942305 eV Core-core repulsion = 16073.149543 eV Total energy + Delta-G solvation = -3258.792761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58738 -40.15621 -39.37523 -37.39665 -36.04850 -33.82894 -33.42981 -30.94522 -30.11798 -28.30842 -26.61021 -25.02989 -22.82563 -21.45143 -21.01283 -20.10497 -19.65720 -18.73831 -17.75364 -17.67458 -17.19462 -16.62679 -16.10962 -15.87052 -15.63854 -15.61034 -14.66536 -14.52933 -14.11582 -13.90025 -13.72112 -13.58478 -13.52567 -12.97160 -12.93078 -12.73860 -12.50231 -12.19180 -12.13015 -11.84986 -11.80432 -11.67443 -11.58766 -11.47007 -11.11355 -10.53423 -10.24964 -10.13821 -8.53563 -6.04636 0.07932 1.36778 1.38647 1.46848 1.57411 1.83518 1.90385 2.29608 3.02354 3.11669 3.41814 3.65469 3.84111 3.99950 4.02774 4.13354 4.14356 4.20086 4.37567 4.44703 4.57816 4.69144 4.82555 4.92651 5.00222 5.07126 5.10130 5.16707 5.27688 5.33065 5.35096 5.36889 5.53290 5.57726 5.87342 6.44642 6.70086 7.00994 7.37602 7.91336 8.63308 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.068235 B = 0.002815 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.249003 B = 9943.782808 C =10272.017897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.003 4.003 7 C -0.220 4.220 8 C 0.490 3.510 9 O -0.534 6.534 10 O -0.345 6.345 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.619 6.619 14 N -0.557 5.557 15 C -0.340 4.340 16 H 0.084 0.916 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 1.000 3.000 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.097 4.097 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.102 0.898 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 14.624 4.495 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.105 0.895 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.003 4.003 7 C -0.239 4.239 8 C 0.338 3.662 9 O -0.427 6.427 10 O -0.261 6.261 11 C -0.004 4.004 12 C 0.222 3.778 13 O -0.506 6.506 14 N -0.195 5.195 15 C -0.469 4.469 16 H 0.102 0.898 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.823 3.177 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.133 4.133 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.281 14.512 4.187 23.713 hybrid contribution 1.117 -0.764 0.133 1.360 sum -17.164 13.748 4.320 22.411 Atomic orbital electron populations 1.21794 0.93403 1.02236 1.02578 1.22016 0.96646 0.99383 0.93183 0.89462 1.22663 0.93990 1.00347 0.98488 1.21880 0.98990 1.02355 0.92052 1.23398 0.92557 0.88348 0.96035 1.21199 0.95737 1.04474 1.02448 1.22134 0.83085 0.76380 0.84550 1.90769 1.71457 1.62673 1.17816 1.86646 1.38950 1.56971 1.43536 1.22470 0.87151 0.96882 0.93925 1.20116 0.83601 0.84976 0.89068 1.90518 1.69553 1.68955 1.21561 1.41739 1.24136 1.40235 1.13342 1.19698 1.09265 1.23536 0.94399 0.89781 1.26164 0.97269 0.98816 0.98766 1.69674 1.26139 1.42701 1.17012 0.84890 0.77501 0.77840 0.77515 1.19437 1.19276 1.19450 1.21583 0.93506 0.98775 0.99483 0.91852 0.91662 0.92557 0.91037 0.89819 0.90686 0.89383 0.82664 0.87720 0.87749 0.76541 0.90902 0.87951 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.15 71.99 0.66 -0.51 16 2 C -0.09 -1.00 3.48 -9.68 -0.03 -1.03 16 3 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 4 C -0.12 -1.60 6.38 31.92 0.20 -1.40 16 5 C -0.12 -2.34 5.41 30.86 0.17 -2.17 16 6 C 0.00 -0.05 6.15 -17.00 -0.10 -0.16 16 7 C -0.22 -5.59 10.06 23.40 0.24 -5.36 16 8 C 0.49 16.59 7.90 70.10 0.55 17.14 16 9 O -0.53 -19.02 13.55 19.74 0.27 -18.75 16 10 O -0.35 -13.89 9.77 -50.77 -0.50 -14.38 16 11 C 0.07 2.93 5.96 71.23 0.42 3.36 16 12 C 0.44 22.19 7.86 87.66 0.69 22.88 16 13 O -0.62 -36.56 16.08 15.73 0.25 -36.30 16 14 N -0.56 -29.43 5.29 -306.99 -1.62 -31.06 16 15 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 16 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 17 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 18 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 19 Si 1.00 42.53 29.55 68.60 2.03 44.55 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C -0.10 -1.22 6.21 30.52 0.19 -1.03 16 24 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.49 8.08 -2.39 -0.02 0.47 16 27 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.92 6.27 -2.39 -0.01 1.90 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.40 19.88 7.90 -92.70 -0.73 19.15 16 35 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.08 7.79 -2.39 -0.02 1.06 16 Total: -1.00 -70.10 319.08 5.32 -64.77 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.35 Total: 27.13 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 4.26 Total: 13.03 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.34 Total: -80.05 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: 0.02 Total: -69.43 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.10 5.32 -64.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.496 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds