Wall clock time and date at job start Mon Mar 30 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.50779 * 2 1 4 4 C 1.54979 * 110.57331 * 237.08361 * 2 1 3 5 5 C 1.55128 * 102.22620 * 204.17036 * 4 2 1 6 6 C 1.51841 * 104.31686 * 37.93376 * 5 4 2 7 7 C 1.33085 * 126.34243 * 156.14058 * 6 5 4 8 8 C 1.46950 * 120.00375 * 179.68952 * 7 6 5 9 9 O 1.21538 * 119.99492 * 359.97438 * 8 7 6 10 10 O 1.34794 * 120.00270 * 179.97438 * 8 7 6 11 11 C 1.45199 * 117.00155 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47273 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99886 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00110 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00310 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99734 * 359.72414 * 15 14 12 17 17 C 1.38955 * 120.00445 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99445 * 359.71974 * 17 15 14 19 19 Si 1.86798 * 119.99993 * 179.72627 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99619 * 19 17 15 21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99204 * 19 17 15 23 23 C 1.51448 * 107.31805 * 335.87035 * 6 5 4 24 24 H 1.09001 * 109.47462 * 298.70135 * 1 2 3 25 25 H 1.09003 * 109.46648 * 58.70560 * 1 2 3 26 26 H 1.09003 * 109.46940 * 178.69835 * 1 2 3 27 27 H 1.09003 * 110.83430 * 322.55906 * 4 2 1 28 28 H 1.08997 * 110.83880 * 85.93784 * 4 2 1 29 29 H 1.09005 * 110.57764 * 279.19081 * 5 4 2 30 30 H 1.09003 * 110.41731 * 156.58908 * 5 4 2 31 31 H 1.08000 * 119.99946 * 359.68068 * 7 6 5 32 32 H 1.08998 * 109.46945 * 59.99657 * 11 10 8 33 33 H 1.09001 * 109.47066 * 299.99888 * 11 10 8 34 34 H 0.97004 * 120.00041 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99412 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.98469 * 119.95231 * 23 6 5 37 37 H 1.09004 * 109.98538 * 241.21056 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0209 0.0000 4 6 2.0746 -0.7885 -1.2180 5 6 3.4850 -1.2126 -0.7309 6 6 3.2911 -1.5433 0.7384 7 6 4.0544 -2.3489 1.4729 8 6 3.7411 -2.5657 2.8921 9 8 2.7850 -2.0090 3.3952 10 8 4.5140 -3.3821 3.6359 11 6 4.1454 -3.5489 5.0304 12 6 5.1164 -4.4887 5.6977 13 8 6.0289 -4.9708 5.0604 14 7 4.9701 -4.7942 7.0021 15 6 5.8531 -5.6495 7.6090 16 1 6.6633 -6.0820 7.0407 17 6 5.7020 -5.9650 8.9539 18 7 4.7160 -5.4391 9.6452 19 14 6.9006 -7.1363 9.7788 20 1 8.2748 -6.5801 9.6929 21 1 6.5241 -7.3063 11.2052 22 1 6.8560 -8.4534 9.0942 23 6 2.0720 -0.7815 1.2149 24 1 -0.3634 0.4935 0.9014 25 1 -0.3633 0.5338 -0.8782 26 1 -0.3633 -1.0274 -0.0233 27 1 1.4536 -1.6601 -1.4248 28 1 2.1433 -0.1465 -2.0962 29 1 4.1930 -0.3918 -0.8461 30 1 3.8275 -2.0916 -1.2769 31 1 4.9042 -2.8434 1.0259 32 1 3.1385 -3.9614 5.0932 33 1 4.1737 -2.5815 5.5319 34 1 4.2397 -4.4095 7.5115 35 1 4.6108 -5.6590 10.5841 36 1 1.3158 -1.4777 1.5775 37 1 2.3521 -0.0893 2.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:58 Heat of formation + Delta-G solvation = -126.414956 kcal Electronic energy + Delta-G solvation = -19394.595552 eV Core-core repulsion = 16136.577014 eV Total energy + Delta-G solvation = -3258.018538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22791 -38.76969 -37.97044 -35.93494 -33.96514 -33.02607 -31.35128 -30.21587 -28.54308 -27.18351 -24.95545 -24.21888 -21.47974 -20.41112 -19.53954 -18.61206 -18.02768 -17.40397 -16.26610 -16.13643 -15.94123 -15.35269 -14.70476 -14.43183 -13.99022 -13.96614 -13.87277 -13.31955 -13.07452 -12.81852 -12.45348 -12.19705 -11.99436 -11.84470 -11.59940 -11.54526 -11.15958 -11.09021 -10.90958 -10.83078 -10.47040 -10.31244 -10.28134 -10.11093 -9.56952 -9.32112 -8.48109 -8.05451 -6.47358 -3.89256 1.13164 2.84839 3.08139 3.17594 3.24251 3.29460 3.77818 4.08446 4.19501 4.33594 4.59790 4.71453 4.91516 5.01095 5.09107 5.17981 5.18489 5.24328 5.27181 5.46786 5.55249 5.55401 5.62534 5.68704 5.74345 5.75749 5.84904 5.98199 6.08062 6.11152 6.24613 6.29234 6.73386 7.50077 7.92842 8.04729 8.52076 9.09842 9.42556 9.92987 10.69970 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055176 B = 0.002931 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.341042 B = 9550.726138 C = 9979.981828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.028 4.028 7 C -0.190 4.190 8 C 0.492 3.508 9 O -0.518 6.518 10 O -0.323 6.323 11 C 0.062 3.938 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.554 5.554 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.095 4.095 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.090 0.910 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 10.664 -18.009 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.137 4.137 6 C -0.028 4.028 7 C -0.209 4.209 8 C 0.339 3.661 9 O -0.410 6.410 10 O -0.238 6.238 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.191 5.191 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.063 10.453 -18.041 22.014 hybrid contribution 0.042 -0.330 1.021 1.073 sum -7.021 10.122 -17.020 21.010 Atomic orbital electron populations 1.21793 0.94615 1.02019 1.01728 1.22074 0.95978 0.99305 0.94711 0.90473 1.22658 0.95226 1.00165 0.97655 1.21643 0.98407 1.02246 0.91371 1.22997 0.93406 0.90905 0.95520 1.21229 1.04026 1.05232 0.90442 1.21459 0.80217 0.76306 0.88160 1.90811 1.28641 1.47704 1.73865 1.86644 1.53245 1.60701 1.23177 1.22704 0.99343 1.00952 0.78571 1.19353 0.88086 0.86648 0.83535 1.90559 1.34977 1.56509 1.63957 1.41697 1.28279 1.41780 1.07348 1.19680 1.08782 1.21625 0.93071 0.87690 1.25309 0.97664 0.98428 0.96378 1.69609 1.30568 1.43944 1.09769 0.85856 0.80057 0.80220 0.77737 1.19759 1.20882 1.19762 1.21493 0.95293 0.98804 0.97580 0.92419 0.92661 0.92485 0.90883 0.90920 0.89110 0.90005 0.83893 0.89634 0.89636 0.77160 0.91605 0.89150 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.12 37.16 0.34 -0.69 16 2 C -0.10 -0.79 3.49 -88.90 -0.31 -1.10 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -0.80 6.39 -24.56 -0.16 -0.96 16 5 C -0.10 -0.74 6.66 -26.19 -0.17 -0.92 16 6 C -0.03 -0.29 6.15 -100.21 -0.62 -0.91 16 7 C -0.19 -2.47 10.06 -37.85 -0.38 -2.85 16 8 C 0.49 8.29 7.90 34.26 0.27 8.56 16 9 O -0.52 -9.20 13.90 -19.29 -0.27 -9.47 16 10 O -0.32 -6.41 9.77 -47.43 -0.46 -6.87 16 11 C 0.06 1.24 5.96 36.01 0.21 1.45 16 12 C 0.44 10.91 7.86 -10.99 -0.09 10.83 16 13 O -0.58 -16.47 16.08 -14.11 -0.23 -16.69 16 14 N -0.55 -14.31 5.29 -10.96 -0.06 -14.37 16 15 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 16 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 19 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 C -0.10 -1.01 4.40 -26.84 -0.12 -1.13 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 1.08 7.35 -51.93 -0.38 0.70 16 37 H 0.09 1.04 7.69 -51.93 -0.40 0.64 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -32.33 319.89 -7.01 -39.34 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.26 Total: 6.78 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.26 Total: 4.21 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.67 Total: -38.05 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.96 Total: -33.03 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.33 -7.01 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.070 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds