Wall clock time and date at job start Mon Mar 30 2020 00:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.50779 * 2 1 4 4 C 1.54979 * 110.57331 * 237.08361 * 2 1 3 5 5 C 1.55128 * 102.22620 * 204.17036 * 4 2 1 6 6 C 1.51841 * 104.31686 * 37.93376 * 5 4 2 7 7 C 1.33085 * 126.34243 * 156.14058 * 6 5 4 8 8 C 1.46950 * 120.00375 * 179.68952 * 7 6 5 9 9 O 1.21538 * 119.99492 * 359.97438 * 8 7 6 10 10 O 1.34794 * 120.00270 * 179.97438 * 8 7 6 11 11 C 1.45199 * 117.00155 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47273 * 180.02562 * 11 10 8 13 13 O 1.21295 * 119.99886 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00110 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00310 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99734 * 359.72414 * 15 14 12 17 17 C 1.38955 * 120.00445 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99445 * 359.71974 * 17 15 14 19 19 Si 1.86798 * 119.99993 * 179.72627 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99619 * 19 17 15 21 21 H 1.48508 * 109.46609 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46903 * 299.99204 * 19 17 15 23 23 C 1.51448 * 107.31805 * 335.87035 * 6 5 4 24 24 H 1.09001 * 109.47462 * 298.70135 * 1 2 3 25 25 H 1.09003 * 109.46648 * 58.70560 * 1 2 3 26 26 H 1.09003 * 109.46940 * 178.69835 * 1 2 3 27 27 H 1.09003 * 110.83430 * 322.55906 * 4 2 1 28 28 H 1.08997 * 110.83880 * 85.93784 * 4 2 1 29 29 H 1.09005 * 110.57764 * 279.19081 * 5 4 2 30 30 H 1.09003 * 110.41731 * 156.58908 * 5 4 2 31 31 H 1.08000 * 119.99946 * 359.68068 * 7 6 5 32 32 H 1.08998 * 109.46945 * 59.99657 * 11 10 8 33 33 H 1.09001 * 109.47066 * 299.99888 * 11 10 8 34 34 H 0.97004 * 120.00041 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99412 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.98469 * 119.95231 * 23 6 5 37 37 H 1.09004 * 109.98538 * 241.21056 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0209 0.0000 4 6 2.0746 -0.7885 -1.2180 5 6 3.4850 -1.2126 -0.7309 6 6 3.2911 -1.5433 0.7384 7 6 4.0544 -2.3489 1.4729 8 6 3.7411 -2.5657 2.8921 9 8 2.7850 -2.0090 3.3952 10 8 4.5140 -3.3821 3.6359 11 6 4.1454 -3.5489 5.0304 12 6 5.1164 -4.4887 5.6977 13 8 6.0289 -4.9708 5.0604 14 7 4.9701 -4.7942 7.0021 15 6 5.8531 -5.6495 7.6090 16 1 6.6633 -6.0820 7.0407 17 6 5.7020 -5.9650 8.9539 18 7 4.7160 -5.4391 9.6452 19 14 6.9006 -7.1363 9.7788 20 1 8.2748 -6.5801 9.6929 21 1 6.5241 -7.3063 11.2052 22 1 6.8560 -8.4534 9.0942 23 6 2.0720 -0.7815 1.2149 24 1 -0.3634 0.4935 0.9014 25 1 -0.3633 0.5338 -0.8782 26 1 -0.3633 -1.0274 -0.0233 27 1 1.4536 -1.6601 -1.4248 28 1 2.1433 -0.1465 -2.0962 29 1 4.1930 -0.3918 -0.8461 30 1 3.8275 -2.0916 -1.2769 31 1 4.9042 -2.8434 1.0259 32 1 3.1385 -3.9614 5.0932 33 1 4.1737 -2.5815 5.5319 34 1 4.2397 -4.4095 7.5115 35 1 4.6108 -5.6590 10.5841 36 1 1.3158 -1.4777 1.5775 37 1 2.3521 -0.0893 2.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754196421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:57 Heat of formation + Delta-G solvation = -145.633307 kcal Electronic energy + Delta-G solvation = -19395.428922 eV Core-core repulsion = 16136.577014 eV Total energy + Delta-G solvation = -3258.851908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58375 -40.15650 -39.36886 -37.37983 -36.05108 -33.87402 -33.43494 -30.98547 -30.07281 -28.15103 -26.65107 -25.28438 -22.63621 -21.45122 -21.05064 -20.10538 -19.66364 -18.72656 -17.75597 -17.67895 -17.10219 -16.67452 -16.35172 -15.85580 -15.70589 -15.31908 -14.69173 -14.53761 -14.11136 -13.94243 -13.68498 -13.57227 -13.48198 -13.11773 -12.94148 -12.56594 -12.50467 -12.37732 -12.13107 -11.86771 -11.77187 -11.58995 -11.58196 -11.42169 -11.28780 -10.53858 -10.26244 -10.14179 -8.53889 -6.04970 0.08132 1.36569 1.38549 1.46797 1.57367 1.83178 1.90085 2.29457 3.02502 3.11398 3.40235 3.66212 3.80071 3.98783 4.05025 4.13576 4.18776 4.19700 4.31448 4.47564 4.55762 4.68286 4.85256 4.89623 4.98715 5.02970 5.15164 5.17401 5.24050 5.32388 5.34951 5.39873 5.47630 5.53983 5.87011 6.44299 6.69463 7.00678 7.37243 7.90964 8.63068 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055176 B = 0.002931 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.341042 B = 9550.726138 C = 9979.981828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.115 4.115 5 C -0.098 4.098 6 C -0.005 4.005 7 C -0.219 4.219 8 C 0.488 3.512 9 O -0.535 6.535 10 O -0.345 6.345 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.619 6.619 14 N -0.557 5.557 15 C -0.341 4.341 16 H 0.084 0.916 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 1.000 3.000 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.102 4.102 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.282 0.718 36 H 0.073 0.927 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 11.379 -19.307 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.134 4.134 6 C -0.006 4.006 7 C -0.238 4.238 8 C 0.337 3.663 9 O -0.428 6.428 10 O -0.261 6.261 11 C -0.004 4.004 12 C 0.222 3.778 13 O -0.506 6.506 14 N -0.194 5.194 15 C -0.469 4.469 16 H 0.102 0.898 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.139 4.139 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.175 0.825 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.419 11.190 -19.337 23.541 hybrid contribution 0.051 -0.466 1.381 1.458 sum -7.368 10.724 -17.956 22.175 Atomic orbital electron populations 1.21795 0.94224 1.01908 1.02227 1.22077 0.96307 0.99523 0.93701 0.89427 1.22683 0.94326 1.00398 0.97779 1.21799 0.99523 1.03557 0.88537 1.23439 0.91755 0.88105 0.97252 1.21254 1.06113 1.07927 0.88494 1.22169 0.79622 0.75359 0.89198 1.90795 1.29284 1.48366 1.74376 1.86643 1.54528 1.62001 1.22921 1.22467 0.98273 1.00502 0.79180 1.20108 0.88115 0.86441 0.83089 1.90519 1.36995 1.58231 1.64820 1.41736 1.28164 1.41638 1.07893 1.19706 1.09631 1.23573 0.94038 0.89767 1.26162 0.99160 0.99427 0.96214 1.69670 1.31317 1.44248 1.10313 0.84894 0.77785 0.77927 0.77168 1.19427 1.19258 1.19430 1.21569 0.95040 0.98533 0.98730 0.93099 0.90950 0.92991 0.90882 0.88519 0.87166 0.88489 0.82528 0.87794 0.87784 0.76555 0.90891 0.90838 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.12 71.98 0.66 -1.15 16 2 C -0.10 -1.30 3.49 -9.68 -0.03 -1.34 16 3 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.15 6.39 32.00 0.20 -0.94 16 5 C -0.10 -1.14 6.66 30.94 0.21 -0.94 16 6 C 0.00 -0.09 6.15 -17.00 -0.10 -0.20 16 7 C -0.22 -5.58 10.06 23.40 0.24 -5.34 16 8 C 0.49 16.62 7.90 70.10 0.55 17.18 16 9 O -0.54 -19.25 13.90 19.71 0.27 -18.98 16 10 O -0.35 -13.94 9.77 -50.66 -0.49 -14.43 16 11 C 0.07 2.95 5.96 71.24 0.42 3.37 16 12 C 0.44 22.24 7.86 87.66 0.69 22.93 16 13 O -0.62 -36.59 16.08 15.72 0.25 -36.33 16 14 N -0.56 -29.48 5.29 -306.98 -1.62 -31.10 16 15 C -0.34 -19.53 9.68 84.04 0.81 -18.71 16 16 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 17 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 18 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 19 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 C -0.10 -2.09 4.40 30.52 0.13 -1.96 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.76 8.05 -2.39 -0.02 0.74 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 35 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.07 1.78 7.35 -2.39 -0.02 1.76 16 37 H 0.07 1.72 7.69 -2.38 -0.02 1.70 16 Total: -1.00 -70.66 319.89 5.31 -65.35 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.34 Total: 27.11 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.25 Total: 12.90 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.34 Total: -80.17 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: 0.03 Total: -69.75 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.66 5.31 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.284 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds