Wall clock time and date at job start Mon Mar 30 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.74017 * 2 1 4 4 C 1.54986 * 110.83031 * 236.56732 * 2 1 3 5 5 C 1.54281 * 103.88177 * 204.62771 * 4 2 1 6 6 C 1.51839 * 106.65649 * 23.16485 * 5 4 2 7 7 C 1.33080 * 126.30209 * 180.36662 * 6 5 4 8 8 C 1.46954 * 119.99665 * 359.95661 * 7 6 5 9 9 O 1.21539 * 119.99618 * 359.97438 * 8 7 6 10 10 O 1.34795 * 120.00236 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00166 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47160 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99843 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00344 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00242 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00452 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99734 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00106 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47045 * 90.00335 * 19 17 15 21 21 H 1.48498 * 109.46906 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.46961 * 330.00043 * 19 17 15 23 23 C 1.51845 * 107.35808 * 0.33029 * 6 5 4 24 24 H 1.08997 * 109.47043 * 183.43134 * 1 2 3 25 25 H 1.08998 * 109.47189 * 303.42969 * 1 2 3 26 26 H 1.08997 * 109.47176 * 63.43179 * 1 2 3 27 27 H 1.09002 * 110.57212 * 323.27252 * 4 2 1 28 28 H 1.09003 * 110.56596 * 85.99305 * 4 2 1 29 29 H 1.09002 * 109.98199 * 142.54125 * 5 4 2 30 30 H 1.08994 * 109.98614 * 263.85070 * 5 4 2 31 31 H 1.07993 * 120.00200 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46670 * 299.99002 * 11 10 8 33 33 H 1.08994 * 109.47442 * 59.99576 * 11 10 8 34 34 H 0.97002 * 119.99993 * 359.97438 * 14 12 11 35 35 H 0.96999 * 120.00150 * 179.97438 * 18 17 15 36 36 H 1.08997 * 110.44189 * 217.48357 * 23 6 5 37 37 H 1.09006 * 110.44399 * 94.96423 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9160 1.0193 0.0000 4 6 2.0812 -0.7981 -1.2089 5 6 3.4853 -1.2428 -0.7497 6 6 3.4695 -1.2350 0.7686 7 6 4.4855 -1.5487 1.5688 8 6 5.7764 -1.9514 0.9936 9 8 5.9159 -1.9984 -0.2128 10 8 6.8055 -2.2697 1.8040 11 6 8.0510 -2.6578 1.1665 12 6 9.0784 -2.9745 2.2225 13 8 8.7895 -2.8818 3.3969 14 7 10.3183 -3.3608 1.8621 15 6 11.2531 -3.6484 2.8228 16 1 10.9959 -3.5658 3.8685 17 6 12.5312 -4.0472 2.4512 18 7 12.8441 -4.1481 1.1788 19 14 13.8052 -4.4384 3.7601 20 1 13.7272 -5.8789 4.1119 21 1 15.1610 -4.1287 3.2395 22 1 13.5402 -3.6183 4.9695 23 6 2.0809 -0.8023 1.2049 24 1 -0.3633 -1.0258 0.0615 25 1 -0.3633 0.5661 0.8576 26 1 -0.3633 0.4596 -0.9191 27 1 1.4529 -1.6649 -1.4141 28 1 2.1507 -0.1596 -2.0896 29 1 3.6966 -2.2471 -1.1170 30 1 4.2365 -0.5449 -1.1191 31 1 4.3612 -1.5077 2.6408 32 1 7.8829 -3.5387 0.5470 33 1 8.4110 -1.8389 0.5438 34 1 10.5492 -3.4353 0.9229 35 1 13.7364 -4.4262 0.9193 36 1 2.1401 -0.1681 2.0895 37 1 1.4548 -1.6729 1.4009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754196423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:59 Heat of formation + Delta-G solvation = -126.590824 kcal Electronic energy + Delta-G solvation = -19315.499930 eV Core-core repulsion = 16057.473766 eV Total energy + Delta-G solvation = -3258.026164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22099 -38.76568 -37.97943 -35.95461 -33.96651 -32.99544 -31.35112 -30.18015 -28.63362 -27.37283 -24.82104 -24.09590 -21.61217 -20.42336 -19.54135 -18.60812 -18.02896 -17.41171 -16.36486 -16.15408 -15.79339 -15.16753 -14.83920 -14.45934 -14.09588 -13.90072 -13.81894 -13.63505 -13.03958 -12.90872 -12.32375 -12.06239 -12.03457 -11.92381 -11.60029 -11.46089 -11.21756 -11.11363 -11.02060 -10.85168 -10.42295 -10.31410 -10.28576 -10.09648 -9.58021 -9.32563 -8.48246 -8.05526 -6.47500 -3.89372 1.12965 2.84488 3.07910 3.15318 3.24936 3.31511 3.77633 4.08159 4.18991 4.30576 4.56221 4.75190 4.82481 5.06951 5.12277 5.17863 5.18079 5.20479 5.27490 5.34166 5.46115 5.55144 5.59349 5.70067 5.75453 5.78819 5.86380 5.93058 6.07095 6.08297 6.22632 6.29179 6.73157 7.50191 7.92879 8.04612 8.51906 9.09847 9.42504 9.92833 10.69867 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.070359 B = 0.002802 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.863941 B = 9991.342443 C =10333.186718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.124 4.124 5 C -0.098 4.098 6 C -0.028 4.028 7 C -0.190 4.190 8 C 0.492 3.508 9 O -0.518 6.518 10 O -0.323 6.323 11 C 0.062 3.938 12 C 0.439 3.561 13 O -0.576 6.576 14 N -0.554 5.554 15 C -0.302 4.302 16 H 0.106 0.894 17 C 0.024 3.976 18 N -0.898 5.898 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.095 4.095 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 6.680 -5.169 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.162 4.162 5 C -0.135 4.135 6 C -0.028 4.028 7 C -0.209 4.209 8 C 0.339 3.661 9 O -0.410 6.410 10 O -0.238 6.238 11 C -0.016 4.016 12 C 0.224 3.776 13 O -0.460 6.460 14 N -0.191 5.191 15 C -0.431 4.431 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.761 3.239 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.894 6.662 -4.811 22.452 hybrid contribution 1.029 -0.334 -0.128 1.089 sum -19.865 6.328 -4.939 21.426 Atomic orbital electron populations 1.21761 0.94481 1.02009 1.01859 1.22144 0.95693 0.99325 0.94478 0.90125 1.22547 0.96029 0.99865 0.97754 1.21462 0.97199 1.03496 0.91324 1.23076 0.93991 0.89433 0.96351 1.21229 0.89875 1.08898 1.00884 1.21459 0.85258 0.74351 0.85057 1.90811 1.84014 1.50336 1.15872 1.86644 1.20482 1.77155 1.39483 1.22705 0.82029 1.01318 0.95525 1.19355 0.83554 0.85574 0.89125 1.90560 1.79513 1.57467 1.18445 1.41706 1.08712 1.58644 1.10083 1.19726 0.90368 1.42514 0.90458 0.87637 1.25314 0.98266 0.97090 0.97168 1.69616 1.21980 1.47074 1.15202 0.85793 0.79041 0.78890 0.80196 1.20277 1.20831 1.19287 1.21675 0.92273 1.00444 0.98819 0.92458 0.92511 0.92420 0.91232 0.91166 0.89377 0.89315 0.83897 0.89624 0.89628 0.77161 0.91663 0.90028 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.29 37.16 0.35 -0.44 16 2 C -0.10 -0.67 3.53 -88.57 -0.31 -0.98 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.95 6.31 -25.01 -0.16 -1.11 16 5 C -0.10 -1.04 4.84 -26.65 -0.13 -1.16 16 6 C -0.03 -0.30 6.16 -100.01 -0.62 -0.91 16 7 C -0.19 -2.46 10.06 -37.85 -0.38 -2.84 16 8 C 0.49 8.28 7.90 34.26 0.27 8.55 16 9 O -0.52 -9.20 13.90 -19.30 -0.27 -9.47 16 10 O -0.32 -6.40 9.77 -47.43 -0.46 -6.86 16 11 C 0.06 1.23 5.96 36.01 0.21 1.45 16 12 C 0.44 10.91 7.86 -10.99 -0.09 10.83 16 13 O -0.58 -16.46 16.08 -14.11 -0.23 -16.69 16 14 N -0.55 -14.32 5.29 -10.96 -0.06 -14.38 16 15 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 16 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 19 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.10 -0.72 6.10 -26.32 -0.16 -0.89 16 24 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 30 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.61 8.00 -51.93 -0.42 0.20 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -32.33 320.05 -7.01 -39.34 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.27 Total: 6.54 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.25 Total: 4.43 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.67 Total: -38.04 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.96 Total: -33.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.33 -7.01 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.252 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds