Wall clock time and date at job start Mon Mar 30 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 110.74017 * 2 1 4 4 C 1.54986 * 110.83031 * 236.56732 * 2 1 3 5 5 C 1.54281 * 103.88177 * 204.62771 * 4 2 1 6 6 C 1.51839 * 106.65649 * 23.16485 * 5 4 2 7 7 C 1.33080 * 126.30209 * 180.36662 * 6 5 4 8 8 C 1.46954 * 119.99665 * 359.95661 * 7 6 5 9 9 O 1.21539 * 119.99618 * 359.97438 * 8 7 6 10 10 O 1.34795 * 120.00236 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00166 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47160 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99843 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00344 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00242 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00452 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99734 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00106 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47045 * 90.00335 * 19 17 15 21 21 H 1.48498 * 109.46906 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.46961 * 330.00043 * 19 17 15 23 23 C 1.51845 * 107.35808 * 0.33029 * 6 5 4 24 24 H 1.08997 * 109.47043 * 183.43134 * 1 2 3 25 25 H 1.08998 * 109.47189 * 303.42969 * 1 2 3 26 26 H 1.08997 * 109.47176 * 63.43179 * 1 2 3 27 27 H 1.09002 * 110.57212 * 323.27252 * 4 2 1 28 28 H 1.09003 * 110.56596 * 85.99305 * 4 2 1 29 29 H 1.09002 * 109.98199 * 142.54125 * 5 4 2 30 30 H 1.08994 * 109.98614 * 263.85070 * 5 4 2 31 31 H 1.07993 * 120.00200 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46670 * 299.99002 * 11 10 8 33 33 H 1.08994 * 109.47442 * 59.99576 * 11 10 8 34 34 H 0.97002 * 119.99993 * 359.97438 * 14 12 11 35 35 H 0.96999 * 120.00150 * 179.97438 * 18 17 15 36 36 H 1.08997 * 110.44189 * 217.48357 * 23 6 5 37 37 H 1.09006 * 110.44399 * 94.96423 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9160 1.0193 0.0000 4 6 2.0812 -0.7981 -1.2089 5 6 3.4853 -1.2428 -0.7497 6 6 3.4695 -1.2350 0.7686 7 6 4.4855 -1.5487 1.5688 8 6 5.7764 -1.9514 0.9936 9 8 5.9159 -1.9984 -0.2128 10 8 6.8055 -2.2697 1.8040 11 6 8.0510 -2.6578 1.1665 12 6 9.0784 -2.9745 2.2225 13 8 8.7895 -2.8818 3.3969 14 7 10.3183 -3.3608 1.8621 15 6 11.2531 -3.6484 2.8228 16 1 10.9959 -3.5658 3.8685 17 6 12.5312 -4.0472 2.4512 18 7 12.8441 -4.1481 1.1788 19 14 13.8052 -4.4384 3.7601 20 1 13.7272 -5.8789 4.1119 21 1 15.1610 -4.1287 3.2395 22 1 13.5402 -3.6183 4.9695 23 6 2.0809 -0.8023 1.2049 24 1 -0.3633 -1.0258 0.0615 25 1 -0.3633 0.5661 0.8576 26 1 -0.3633 0.4596 -0.9191 27 1 1.4529 -1.6649 -1.4141 28 1 2.1507 -0.1596 -2.0896 29 1 3.6966 -2.2471 -1.1170 30 1 4.2365 -0.5449 -1.1191 31 1 4.3612 -1.5077 2.6408 32 1 7.8829 -3.5387 0.5470 33 1 8.4110 -1.8389 0.5438 34 1 10.5492 -3.4353 0.9229 35 1 13.7364 -4.4262 0.9193 36 1 2.1401 -0.1681 2.0895 37 1 1.4548 -1.6729 1.4009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754196423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:59 Heat of formation + Delta-G solvation = -145.736515 kcal Electronic energy + Delta-G solvation = -19316.330149 eV Core-core repulsion = 16057.473766 eV Total energy + Delta-G solvation = -3258.856384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57921 -40.15047 -39.36094 -37.39392 -36.05123 -33.83036 -33.43272 -30.96369 -30.12322 -28.28889 -26.61369 -25.04900 -22.79358 -21.45238 -21.02647 -20.10528 -19.67749 -18.72053 -17.75444 -17.67483 -17.17866 -16.62519 -16.13463 -15.84348 -15.65089 -15.54212 -14.73449 -14.53039 -14.27897 -13.91228 -13.63274 -13.56417 -13.54118 -12.94987 -12.78820 -12.67924 -12.49401 -12.32266 -12.12525 -11.85464 -11.84755 -11.66246 -11.59575 -11.43634 -11.21434 -10.53763 -10.27112 -10.13967 -8.53938 -6.04922 0.07697 1.34887 1.38744 1.47220 1.58633 1.82995 1.89888 2.29452 3.02229 3.11327 3.40453 3.62521 3.82933 4.00362 4.03019 4.13944 4.14180 4.19776 4.37413 4.42069 4.58626 4.69707 4.80000 4.92231 4.99240 5.07029 5.11078 5.19015 5.28881 5.32007 5.35330 5.38073 5.49225 5.54901 5.87219 6.44322 6.69383 7.00878 7.37370 7.91069 8.63197 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.070359 B = 0.002802 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.863941 B = 9991.342443 C =10333.186718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.081 0.919 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.005 4.005 7 C -0.218 4.218 8 C 0.488 3.512 9 O -0.535 6.535 10 O -0.345 6.345 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.619 6.619 14 N -0.557 5.557 15 C -0.339 4.339 16 H 0.084 0.916 17 C -0.010 4.010 18 N -0.915 5.915 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.094 4.094 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.096 0.904 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.259 7.016 -5.465 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.142 4.142 6 C -0.005 4.005 7 C -0.237 4.237 8 C 0.337 3.663 9 O -0.428 6.428 10 O -0.261 6.261 11 C -0.004 4.004 12 C 0.223 3.777 13 O -0.506 6.506 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.102 0.898 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.823 3.177 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.130 4.130 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.195 7.000 -5.148 23.835 hybrid contribution 1.352 -0.415 -0.134 1.420 sum -20.843 6.586 -5.282 22.488 Atomic orbital electron populations 1.21739 0.93008 1.02540 1.02514 1.22152 0.96822 0.98964 0.93341 0.90102 1.22538 0.94067 1.00536 0.98464 1.21531 0.98894 1.02401 0.91363 1.23489 0.94796 0.85889 0.96360 1.21247 0.88640 1.11925 1.01853 1.22148 0.85521 0.73738 0.84887 1.90794 1.84219 1.51389 1.16370 1.86642 1.20862 1.77873 1.40714 1.22470 0.81460 1.02857 0.93636 1.20116 0.83917 0.84117 0.89596 1.90520 1.80342 1.59064 1.20648 1.41744 1.09023 1.58679 1.10027 1.19732 0.91872 1.45076 0.90131 0.89790 1.26166 0.99470 0.95946 0.99457 1.69675 1.22848 1.46486 1.16527 0.84827 0.76689 0.78837 0.77374 1.19366 1.19310 1.19536 1.21823 0.90049 1.01408 0.99726 0.92010 0.91782 0.91910 0.90240 0.90411 0.90740 0.90795 0.82564 0.87739 0.87760 0.76545 0.90908 0.88583 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.29 71.98 0.67 -0.41 16 2 C -0.09 -1.03 3.53 -9.47 -0.03 -1.06 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -1.57 6.31 31.71 0.20 -1.37 16 5 C -0.11 -2.13 4.84 30.65 0.15 -1.98 16 6 C 0.00 -0.09 6.16 -16.87 -0.10 -0.20 16 7 C -0.22 -5.54 10.06 23.40 0.24 -5.30 16 8 C 0.49 16.56 7.90 70.11 0.55 17.12 16 9 O -0.53 -19.11 13.90 19.71 0.27 -18.83 16 10 O -0.35 -13.89 9.77 -50.67 -0.49 -14.39 16 11 C 0.07 2.94 5.96 71.24 0.42 3.36 16 12 C 0.44 22.21 7.86 87.66 0.69 22.90 16 13 O -0.62 -36.58 16.08 15.73 0.25 -36.32 16 14 N -0.56 -29.46 5.29 -306.99 -1.62 -31.08 16 15 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 16 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 17 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 18 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 19 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.09 -1.16 6.10 30.86 0.19 -0.97 16 24 H 0.06 0.44 8.08 -2.39 -0.02 0.42 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 0.92 8.04 -2.39 -0.02 0.90 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.73 7.70 -2.39 -0.02 1.71 16 30 H 0.07 1.74 7.67 -2.39 -0.02 1.72 16 31 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 34 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 35 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 1.09 8.00 -2.38 -0.02 1.07 16 Total: -1.00 -70.27 320.05 5.31 -64.95 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.34 Total: 26.67 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 4.25 Total: 13.41 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.34 Total: -80.08 kcal Atomic # 8 Polarization: -69.57 SS G_CDS: 0.03 Total: -69.54 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -70.27 5.31 -64.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754196423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.784 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds