Wall clock time and date at job start Mon Mar 30 2020 00:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 117.00163 * 2 1 4 4 C 1.38543 * 120.04295 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94850 * 179.97438 * 4 3 2 6 6 O 1.35979 * 119.97780 * 179.97438 * 5 4 3 7 7 C 1.38690 * 120.03639 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95910 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47021 * 285.00365 * 8 7 5 10 10 C 1.46903 * 110.99815 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47378 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00223 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00251 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00206 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46792 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47366 * 119.99730 * 15 13 11 18 18 H 1.48500 * 109.46975 * 240.00136 * 15 13 11 19 19 C 1.38239 * 120.08976 * 359.97438 * 7 5 4 20 20 C 1.38530 * 120.05094 * 0.02562 * 19 7 5 21 21 O 1.36077 * 120.01801 * 179.97438 * 20 19 7 22 22 C 1.42900 * 116.99770 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47064 * 299.99773 * 1 2 3 25 25 H 1.08990 * 109.47154 * 59.99639 * 1 2 3 26 26 H 1.08002 * 120.02353 * 0.24593 * 4 3 2 27 27 H 0.96703 * 113.99814 * 90.00677 * 6 5 4 28 28 H 1.09002 * 109.46292 * 45.00477 * 8 7 5 29 29 H 1.08999 * 109.47067 * 164.99889 * 8 7 5 30 30 H 1.00899 * 111.00136 * 56.04531 * 9 8 7 31 31 H 1.09003 * 109.47072 * 300.00370 * 10 9 8 32 32 H 1.09000 * 109.46772 * 59.99946 * 10 9 8 33 33 H 0.97000 * 120.00234 * 180.02562 * 14 13 11 34 34 H 1.08000 * 119.97475 * 179.97438 * 19 7 5 35 35 H 1.08998 * 109.46877 * 60.00330 * 22 21 20 36 36 H 1.09002 * 109.46980 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47276 * 300.00518 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1852 4.7500 0.0011 7 6 3.3094 3.6798 0.0016 8 6 3.9940 5.0223 0.0016 9 7 3.8976 5.6211 -1.3363 10 6 4.5552 6.9342 -1.3740 11 6 4.4366 7.5159 -2.7591 12 1 3.9236 6.9654 -3.5339 13 6 4.9829 8.7508 -3.0373 14 7 5.6080 9.4210 -2.0941 15 14 4.8353 9.4722 -4.7541 16 1 4.0922 8.5271 -5.6258 17 1 4.1049 10.7634 -4.6874 18 1 6.1918 9.6990 -5.3140 19 6 4.0629 2.5208 0.0021 20 6 3.4358 1.2856 0.0016 21 8 4.1782 0.1452 0.0016 22 6 5.5992 0.2962 0.0016 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.2142 2.3189 0.0050 27 1 0.9712 5.0800 0.8845 28 1 3.5114 5.6761 0.7281 29 1 5.0433 4.8951 0.2680 30 1 2.9357 5.6901 -1.6331 31 1 4.0761 7.6012 -0.6571 32 1 5.6083 6.8206 -1.1169 33 1 5.9920 10.2900 -2.2897 34 1 5.1414 2.5784 0.0021 35 1 5.9061 0.8455 0.8916 36 1 6.0690 -0.6874 0.0012 37 1 5.9062 0.8456 -0.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787298697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:19 Heat of formation + Delta-G solvation = -89.873069 kcal Electronic energy + Delta-G solvation = -20047.863777 eV Core-core repulsion = 16791.429814 eV Total energy + Delta-G solvation = -3256.433963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68278 -38.47914 -38.45228 -35.73903 -34.79682 -32.51486 -30.56217 -29.54098 -27.79040 -27.28840 -26.23258 -24.02810 -22.23437 -21.52278 -20.97217 -18.83210 -17.76584 -17.09126 -16.62943 -16.25932 -16.05312 -15.28861 -14.90129 -14.75633 -14.51733 -14.44835 -14.03205 -13.72896 -13.32658 -12.63367 -12.53702 -12.41679 -12.04609 -11.61337 -11.50212 -11.31218 -11.24974 -11.19732 -10.79204 -10.68582 -10.50048 -10.34742 -9.87687 -9.15273 -8.64722 -8.45658 -7.67261 -7.22031 -6.00912 -4.02166 1.25163 1.38626 3.18470 3.26198 3.33196 3.40154 3.46360 3.60272 4.28007 4.46477 4.75945 4.90095 4.94935 5.02812 5.13340 5.18053 5.22682 5.31653 5.35226 5.36626 5.48708 5.61144 5.63765 5.87674 5.95538 6.20050 6.25023 6.54081 6.70177 6.99083 7.26020 7.45265 7.48666 7.78133 7.82629 8.15041 8.45484 8.65801 9.07701 9.62648 11.10328 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.004045 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.063032 B = 6921.123769 C = 7416.251382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.103 3.897 4 C -0.198 4.198 5 C 0.112 3.888 6 O -0.487 6.487 7 C -0.084 4.084 8 C 0.105 3.895 9 N -0.683 5.683 10 C 0.193 3.807 11 C -0.511 4.511 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.142 4.142 20 C 0.090 3.910 21 O -0.309 6.309 22 C 0.025 3.975 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.138 0.862 27 H 0.385 0.615 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.337 0.663 31 H -0.013 1.013 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 -17.666 8.511 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.058 3.942 4 C -0.217 4.217 5 C 0.067 3.933 6 O -0.297 6.297 7 C -0.085 4.085 8 C -0.025 4.025 9 N -0.314 5.314 10 C 0.067 3.933 11 C -0.549 4.549 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.162 4.162 20 C 0.045 3.955 21 O -0.223 6.223 22 C -0.070 4.070 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.240 0.760 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.004 0.996 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.624 -18.263 7.682 20.891 hybrid contribution -0.714 1.472 0.099 1.639 sum -7.338 -16.792 7.781 19.908 Atomic orbital electron populations 1.23040 0.78832 1.03711 1.01273 1.86159 1.20806 1.25842 1.89274 1.17926 0.88914 0.84733 1.02636 1.21197 1.00279 0.91034 1.09224 1.17894 0.88778 0.85155 1.01487 1.84917 1.72376 1.39421 1.32971 1.20124 0.92446 0.96120 0.99841 1.20670 0.98783 0.90021 0.93002 1.60760 1.21635 1.27970 1.21027 1.19574 0.94253 0.82750 0.96734 1.21228 1.35457 1.02126 0.96122 0.91911 1.24982 0.95321 0.96918 0.97376 1.69972 1.37411 1.13880 1.32652 0.86427 0.77744 0.78860 0.84310 1.19630 1.21089 1.21017 1.20878 1.00528 0.89883 1.04885 1.18186 0.88108 0.86063 1.03162 1.86146 1.18674 1.28166 1.89315 1.23073 0.78656 1.03636 1.01636 0.88380 0.92874 0.92656 0.84395 0.75966 0.95316 0.91140 0.84546 0.99559 0.95507 0.93016 0.84176 0.92710 0.88410 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.08 10.28 -34.30 -0.35 -4.43 16 3 C 0.10 1.48 6.70 -39.14 -0.26 1.22 16 4 C -0.20 -2.65 8.97 -39.31 -0.35 -3.00 16 5 C 0.11 1.67 6.55 -39.26 -0.26 1.42 16 6 O -0.49 -6.91 12.25 -19.68 -0.24 -7.15 16 7 C -0.08 -1.35 5.44 -104.45 -0.57 -1.92 16 8 C 0.10 1.91 5.43 -4.98 -0.03 1.89 16 9 N -0.68 -15.41 6.48 -116.34 -0.75 -16.16 16 10 C 0.19 5.19 5.44 -4.98 -0.03 5.17 16 11 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 12 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.14 -2.10 8.65 -39.47 -0.34 -2.44 16 20 C 0.09 1.33 6.70 -39.14 -0.26 1.07 16 21 O -0.31 -4.30 10.28 -34.57 -0.36 -4.65 16 22 C 0.03 0.25 9.81 101.05 0.99 1.24 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 26 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 27 H 0.38 3.63 9.06 45.56 0.41 4.04 16 28 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 29 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 30 H 0.34 7.67 8.02 -39.29 -0.32 7.35 16 31 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.14 1.85 6.23 -52.49 -0.33 1.52 16 35 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -34.19 316.60 -5.96 -40.15 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.21 Total: 4.68 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.53 Total: -7.84 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.95 Total: -16.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.19 -5.96 -40.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787298697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.720 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds