Wall clock time and date at job start Mon Mar 30 2020 00:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 117.00163 * 2 1 4 4 C 1.38543 * 120.04295 * 0.02562 * 3 2 1 5 5 C 1.38665 * 119.94850 * 179.97438 * 4 3 2 6 6 O 1.35979 * 119.97780 * 179.97438 * 5 4 3 7 7 C 1.38690 * 120.03639 * 359.97438 * 5 4 3 8 8 C 1.50703 * 119.95910 * 179.97438 * 7 5 4 9 9 N 1.46895 * 109.47021 * 285.00365 * 8 7 5 10 10 C 1.46903 * 110.99815 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47378 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00159 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00223 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00251 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00206 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46792 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47366 * 119.99730 * 15 13 11 18 18 H 1.48500 * 109.46975 * 240.00136 * 15 13 11 19 19 C 1.38239 * 120.08976 * 359.97438 * 7 5 4 20 20 C 1.38530 * 120.05094 * 0.02562 * 19 7 5 21 21 O 1.36077 * 120.01801 * 179.97438 * 20 19 7 22 22 C 1.42900 * 116.99770 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.46891 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47064 * 299.99773 * 1 2 3 25 25 H 1.08990 * 109.47154 * 59.99639 * 1 2 3 26 26 H 1.08002 * 120.02353 * 0.24593 * 4 3 2 27 27 H 0.96703 * 113.99814 * 90.00677 * 6 5 4 28 28 H 1.09002 * 109.46292 * 45.00477 * 8 7 5 29 29 H 1.08999 * 109.47067 * 164.99889 * 8 7 5 30 30 H 1.00899 * 111.00136 * 56.04531 * 9 8 7 31 31 H 1.09003 * 109.47072 * 300.00370 * 10 9 8 32 32 H 1.09000 * 109.46772 * 59.99946 * 10 9 8 33 33 H 0.97000 * 120.00234 * 180.02562 * 14 13 11 34 34 H 1.08000 * 119.97475 * 179.97438 * 19 7 5 35 35 H 1.08998 * 109.46877 * 60.00330 * 22 21 20 36 36 H 1.09002 * 109.46980 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47276 * 300.00518 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3742 0.0005 5 6 1.9243 3.6086 0.0011 6 8 1.1852 4.7500 0.0011 7 6 3.3094 3.6798 0.0016 8 6 3.9940 5.0223 0.0016 9 7 3.8976 5.6211 -1.3363 10 6 4.5552 6.9342 -1.3740 11 6 4.4366 7.5159 -2.7591 12 1 3.9236 6.9654 -3.5339 13 6 4.9829 8.7508 -3.0373 14 7 5.6080 9.4210 -2.0941 15 14 4.8353 9.4722 -4.7541 16 1 4.0922 8.5271 -5.6258 17 1 4.1049 10.7634 -4.6874 18 1 6.1918 9.6990 -5.3140 19 6 4.0629 2.5208 0.0021 20 6 3.4358 1.2856 0.0016 21 8 4.1782 0.1452 0.0016 22 6 5.5992 0.2962 0.0016 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.2142 2.3189 0.0050 27 1 0.9712 5.0800 0.8845 28 1 3.5114 5.6761 0.7281 29 1 5.0433 4.8951 0.2680 30 1 2.9357 5.6901 -1.6331 31 1 4.0761 7.6012 -0.6571 32 1 5.6083 6.8206 -1.1169 33 1 5.9920 10.2900 -2.2897 34 1 5.1414 2.5784 0.0021 35 1 5.9061 0.8455 0.8916 36 1 6.0690 -0.6874 0.0012 37 1 5.9062 0.8456 -0.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787298697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:18 Heat of formation + Delta-G solvation = -116.493853 kcal Electronic energy + Delta-G solvation = -20049.018141 eV Core-core repulsion = 16791.429814 eV Total energy + Delta-G solvation = -3257.588327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73425 -39.56104 -39.41749 -37.16156 -36.26166 -34.54650 -31.94581 -30.55101 -29.22095 -28.06316 -27.71259 -25.57463 -23.56459 -23.14379 -22.28596 -19.86739 -18.91380 -18.48985 -18.12927 -17.50991 -17.01516 -16.72265 -16.20979 -16.13742 -15.86935 -15.42302 -15.32824 -15.09496 -14.81047 -14.37790 -13.70727 -13.44919 -13.32450 -13.15596 -13.00589 -12.66334 -12.62859 -12.37862 -12.26982 -12.10377 -12.05514 -11.60125 -11.49637 -11.25959 -10.66883 -9.73525 -9.13989 -8.70540 -8.22585 -6.33609 0.17410 0.24943 1.41027 1.41589 1.55970 2.29360 2.34058 2.39834 2.50598 3.10363 3.23976 3.63098 3.77857 3.94323 4.11704 4.16137 4.33783 4.40965 4.41546 4.42584 4.53629 4.64008 4.67094 4.74342 4.76555 4.96424 5.05241 5.09595 5.27878 5.43837 5.53606 5.61078 6.01663 6.06415 6.44623 6.52462 6.70503 6.84292 6.88107 7.37146 8.88940 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.004045 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.063032 B = 6921.123769 C = 7416.251382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.102 3.898 4 C -0.194 4.194 5 C 0.112 3.888 6 O -0.501 6.501 7 C -0.106 4.106 8 C 0.109 3.891 9 N -0.683 5.683 10 C 0.208 3.792 11 C -0.536 4.536 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.973 3.027 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.143 4.143 20 C 0.078 3.922 21 O -0.324 6.324 22 C 0.017 3.983 23 H 0.121 0.879 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.163 0.837 27 H 0.405 0.595 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.336 0.664 31 H -0.036 1.036 32 H 0.003 0.997 33 H 0.266 0.734 34 H 0.149 0.851 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -18.589 7.966 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.213 4.213 5 C 0.066 3.934 6 O -0.313 6.313 7 C -0.108 4.108 8 C -0.020 4.020 9 N -0.314 5.314 10 C 0.081 3.919 11 C -0.574 4.574 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.573 5.573 15 Si 0.797 3.203 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.162 4.162 20 C 0.032 3.968 21 O -0.238 6.238 22 C -0.077 4.077 23 H 0.139 0.861 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.181 0.819 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.154 0.846 31 H -0.019 1.019 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.615 -19.207 7.164 21.868 hybrid contribution -0.450 1.652 0.344 1.746 sum -8.065 -17.555 7.508 20.727 Atomic orbital electron populations 1.23380 0.76456 1.05704 1.02262 1.86146 1.23308 1.25366 1.88963 1.18145 0.89105 0.85462 1.01662 1.21354 1.01473 0.90016 1.08442 1.17983 0.88433 0.85896 1.01068 1.84858 1.72174 1.39402 1.34909 1.19942 0.93146 0.95008 1.02661 1.20625 0.99300 0.91264 0.90788 1.60640 1.21250 1.25404 1.24082 1.19227 0.92972 0.84334 0.95377 1.21545 1.36027 1.02891 0.96943 0.92246 1.25919 0.94555 0.97172 1.01842 1.70085 1.37875 1.14384 1.34936 0.85287 0.78077 0.78120 0.78820 1.18994 1.20084 1.20178 1.20942 1.01018 0.89698 1.04521 1.18346 0.88767 0.86220 1.03444 1.86128 1.20453 1.27988 1.89256 1.23341 0.76894 1.05439 1.02033 0.86056 0.91368 0.92074 0.81913 0.73690 0.94917 0.91172 0.84644 1.01870 0.97869 0.92543 0.83319 0.91684 0.85891 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -8.02 10.28 -79.51 -0.82 -8.84 16 3 C 0.10 2.79 6.70 22.56 0.15 2.94 16 4 C -0.19 -4.86 8.97 22.44 0.20 -4.66 16 5 C 0.11 3.22 6.55 22.48 0.15 3.37 16 6 O -0.50 -13.72 12.25 -93.32 -1.14 -14.86 16 7 C -0.11 -3.38 5.44 -19.75 -0.11 -3.49 16 8 C 0.11 4.05 5.43 85.56 0.46 4.51 16 9 N -0.68 -31.36 6.48 -521.99 -3.38 -34.75 16 10 C 0.21 11.53 5.44 85.55 0.47 12.00 16 11 C -0.54 -31.62 9.32 25.60 0.24 -31.38 16 12 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 15 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 C -0.14 -4.16 8.65 22.34 0.19 -3.96 16 20 C 0.08 2.23 6.70 22.55 0.15 2.38 16 21 O -0.32 -8.70 10.28 -80.48 -0.83 -9.53 16 22 C 0.02 0.32 9.81 113.37 1.11 1.43 16 23 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 25 H 0.06 0.83 7.67 -2.39 -0.02 0.82 16 26 H 0.16 3.13 6.30 -2.91 -0.02 3.11 16 27 H 0.40 7.18 9.06 -74.06 -0.67 6.51 16 28 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 29 H 0.07 2.56 7.95 -2.39 -0.02 2.54 16 30 H 0.34 15.47 8.02 -89.69 -0.72 14.75 16 31 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.15 3.90 6.23 -2.91 -0.02 3.88 16 35 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 36 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.06 7.66 -2.39 -0.02 1.05 16 Total: -1.00 -73.07 316.60 0.45 -72.63 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.29 Total: 19.59 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.59 Total: -14.85 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -3.10 Total: -91.30 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -2.79 Total: -33.23 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.07 0.45 -72.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787298697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.865 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds