Wall clock time and date at job start Mon Mar 30 2020 00:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.50441 * 2 1 4 4 C 1.54981 * 110.57380 * 237.08872 * 2 1 3 5 5 C 1.55129 * 102.22618 * 204.16646 * 4 2 1 6 6 C 1.51847 * 104.31796 * 37.93160 * 5 4 2 7 7 C 1.33113 * 126.34159 * 156.13771 * 6 5 4 8 8 C 1.46951 * 120.00255 * 179.68859 * 7 6 5 9 9 O 1.21664 * 119.99646 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.36822 * 120.00023 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99629 * 33.51846 * 11 10 8 13 13 C 1.39068 * 120.00093 * 213.51924 * 11 10 8 14 14 N 1.31349 * 120.00164 * 27.22883 * 13 11 10 15 15 Si 1.86797 * 120.00028 * 207.22922 * 13 11 10 16 16 H 1.48498 * 109.47242 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47183 * 299.99792 * 15 13 11 18 18 H 1.48499 * 109.47251 * 59.99636 * 15 13 11 19 19 C 1.46498 * 119.99991 * 359.97438 * 10 8 7 20 20 C 1.50694 * 109.47378 * 275.14075 * 19 10 8 21 21 O 1.20826 * 120.00183 * 0.02562 * 20 19 10 22 22 O 1.34230 * 120.00219 * 179.97438 * 20 19 10 23 23 C 1.51449 * 107.31631 * 335.87048 * 6 5 4 24 24 H 1.08998 * 109.47532 * 298.69694 * 1 2 3 25 25 H 1.08997 * 109.47534 * 58.70288 * 1 2 3 26 26 H 1.09001 * 109.46639 * 178.70175 * 1 2 3 27 27 H 1.09003 * 110.82694 * 322.55751 * 4 2 1 28 28 H 1.08994 * 110.83396 * 86.13125 * 4 2 1 29 29 H 1.08995 * 110.57776 * 279.18746 * 5 4 2 30 30 H 1.08996 * 110.41392 * 156.58797 * 5 4 2 31 31 H 1.08006 * 120.00021 * 359.68498 * 7 6 5 32 32 H 0.97002 * 119.99804 * 5.78311 * 14 13 11 33 33 H 1.08997 * 109.46969 * 35.14471 * 19 10 8 34 34 H 1.09001 * 109.46859 * 155.14073 * 19 10 8 35 35 H 0.96699 * 117.00180 * 179.97438 * 22 20 19 36 36 H 1.09003 * 109.98434 * 119.94751 * 23 6 5 37 37 H 1.08995 * 109.98371 * 241.21016 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9118 1.0210 0.0000 4 6 2.0746 -0.7884 -1.2181 5 6 3.4851 -1.2124 -0.7310 6 6 3.2912 -1.5433 0.7383 7 6 4.0548 -2.3490 1.4728 8 6 3.7416 -2.5659 2.8921 9 8 2.7845 -2.0086 3.3958 10 7 4.5150 -3.3813 3.6360 11 6 4.2236 -3.5828 4.9575 12 1 3.1960 -3.5846 5.2897 13 6 5.2507 -3.7854 5.8730 14 7 6.4420 -3.2811 5.6457 15 14 4.9360 -4.7746 7.4260 16 1 6.1826 -4.8436 8.2300 17 1 3.8690 -4.1181 8.2234 18 1 4.5060 -6.1479 7.0595 19 6 5.6677 -4.0519 3.0295 20 6 5.2144 -5.3243 2.3614 21 8 4.0481 -5.6386 2.3885 22 8 6.1063 -6.1081 1.7352 23 6 2.0721 -0.7814 1.2148 24 1 -0.3634 0.4934 0.9014 25 1 -0.3634 0.5338 -0.8781 26 1 -0.3632 -1.0274 -0.0233 27 1 1.4535 -1.6599 -1.4248 28 1 2.1465 -0.1454 -2.0953 29 1 4.1930 -0.3917 -0.8463 30 1 3.8276 -2.0914 -1.2771 31 1 4.9046 -2.8434 1.0257 32 1 6.5846 -2.6983 4.8836 33 1 6.1221 -3.3943 2.2885 34 1 6.3988 -4.2880 3.8027 35 1 5.7682 -6.9142 1.3217 36 1 1.3159 -1.4778 1.5774 37 1 2.3522 -0.0894 2.0089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828201553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:51 Heat of formation + Delta-G solvation = -116.146447 kcal Electronic energy + Delta-G solvation = -20838.495364 eV Core-core repulsion = 17580.922102 eV Total energy + Delta-G solvation = -3257.573262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89893 -38.83584 -37.74147 -35.64797 -34.91367 -32.41932 -31.63371 -29.57100 -27.91646 -26.86122 -24.88029 -23.43947 -21.53260 -20.12412 -19.92228 -17.84320 -17.55889 -17.28189 -16.43816 -16.02177 -15.45456 -15.09998 -14.71656 -14.06854 -13.83321 -13.59831 -13.53189 -12.97990 -12.66454 -12.58969 -12.17772 -12.04223 -11.95684 -11.49670 -11.32977 -11.00701 -10.90370 -10.84374 -10.72333 -10.41586 -10.40111 -10.22836 -10.06238 -10.02414 -9.04546 -8.57548 -8.43954 -7.89852 -6.71588 -4.03148 2.02372 2.79420 3.29535 3.35374 3.44563 3.55097 4.16406 4.33280 4.51696 4.74527 4.81652 4.99074 5.10002 5.30777 5.40201 5.47223 5.59418 5.64139 5.65914 5.74876 5.89120 5.94186 5.96191 6.05424 6.09098 6.18360 6.20960 6.23111 6.53367 6.59351 6.88660 6.94057 7.01198 7.83319 8.05460 8.40736 8.55452 8.82825 9.26343 9.78179 10.52237 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.005894 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.792290 B = 4749.407822 C = 5515.320448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.064 4.064 7 C -0.199 4.199 8 C 0.501 3.499 9 O -0.562 6.562 10 N -0.433 5.433 11 C -0.386 4.386 12 H 0.089 0.911 13 C 0.005 3.995 14 N -0.872 5.872 15 Si 1.072 2.928 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.284 1.284 19 C 0.098 3.902 20 C 0.455 3.545 21 O -0.501 6.501 22 O -0.526 6.526 23 C -0.079 4.079 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.274 0.726 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.398 0.602 36 H 0.084 0.916 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 1.444 -12.236 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.133 4.133 6 C -0.066 4.066 7 C -0.220 4.220 8 C 0.293 3.707 9 O -0.445 6.445 10 N -0.153 5.153 11 C -0.514 4.514 12 H 0.107 0.893 13 C -0.201 4.201 14 N -0.508 5.508 15 Si 0.897 3.103 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.028 4.028 20 C 0.295 3.705 21 O -0.387 6.387 22 O -0.337 6.337 23 C -0.116 4.116 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.424 1.376 -10.397 10.584 hybrid contribution -0.758 -0.141 -1.747 1.909 sum -2.182 1.235 -12.144 12.400 Atomic orbital electron populations 1.21775 0.95055 1.01806 1.01290 1.22086 0.95588 0.99130 0.95370 0.90921 1.22609 0.95677 0.99818 0.97367 1.21546 0.97760 1.01243 0.92781 1.22653 0.95056 0.94362 0.94538 1.22219 1.01545 1.02941 0.95254 1.18229 0.85570 0.80791 0.86067 1.90614 1.29419 1.50772 1.73685 1.43058 1.25671 1.37205 1.09401 1.20293 0.96539 1.52672 0.81882 0.89313 1.26476 0.92790 0.98042 1.02772 1.70793 1.24454 1.26678 1.28831 0.83459 0.76201 0.76164 0.74446 1.20312 1.20662 1.21040 1.21278 0.93588 0.88589 0.99375 1.24896 0.84248 0.86128 0.75259 1.90688 1.19578 1.72392 1.56047 1.84600 1.44748 1.37219 1.67161 1.21240 0.95476 0.98394 0.96480 0.92562 0.93059 0.92626 0.91254 0.91548 0.90128 0.91151 0.86985 0.91440 0.88271 0.84577 0.74478 0.89809 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.12 37.16 0.34 -1.32 16 2 C -0.10 -1.34 3.49 -88.90 -0.31 -1.65 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.37 6.39 -24.56 -0.16 -1.52 16 5 C -0.10 -1.25 6.66 -26.19 -0.17 -1.42 16 6 C -0.06 -1.12 6.15 -100.20 -0.62 -1.73 16 7 C -0.20 -3.98 9.04 -37.84 -0.34 -4.33 16 8 C 0.50 12.66 7.40 -12.73 -0.09 12.57 16 9 O -0.56 -15.75 13.92 5.22 0.07 -15.68 16 10 N -0.43 -11.14 1.89 -117.50 -0.22 -11.36 16 11 C -0.39 -10.94 8.89 -15.02 -0.13 -11.07 16 12 H 0.09 2.71 7.73 -52.49 -0.41 2.30 16 13 C 0.01 0.14 4.78 -17.45 -0.08 0.06 16 14 N -0.87 -23.51 12.15 55.50 0.67 -22.83 16 15 Si 1.07 23.91 30.00 -169.99 -5.10 18.81 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 C 0.10 2.11 4.67 -5.20 -0.02 2.09 16 20 C 0.45 9.22 8.17 36.00 0.29 9.52 16 21 O -0.50 -11.91 17.07 -18.75 -0.32 -12.23 16 22 O -0.53 -8.18 13.42 -39.26 -0.53 -8.71 16 23 C -0.08 -1.38 4.40 -26.84 -0.12 -1.49 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.97 6.27 -52.48 -0.33 1.64 16 32 H 0.27 7.34 7.20 -40.82 -0.29 7.04 16 33 H 0.10 1.80 6.40 -51.93 -0.33 1.47 16 34 H 0.14 3.11 5.37 -51.93 -0.28 2.83 16 35 H 0.40 4.30 9.10 45.56 0.41 4.71 16 36 H 0.08 1.64 7.35 -51.93 -0.38 1.26 16 37 H 0.08 1.56 7.69 -51.93 -0.40 1.16 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -33.48 311.08 -6.33 -39.81 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.18 Total: 7.80 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.42 Total: -0.30 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.45 Total: -34.19 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.77 Total: -36.61 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.10 Total: 18.81 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.48 -6.33 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828201553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.334 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds