Wall clock time and date at job start Mon Mar 30 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.50441 * 2 1 4 4 C 1.54981 * 110.57380 * 237.08872 * 2 1 3 5 5 C 1.55129 * 102.22618 * 204.16646 * 4 2 1 6 6 C 1.51847 * 104.31796 * 37.93160 * 5 4 2 7 7 C 1.33113 * 126.34159 * 156.13771 * 6 5 4 8 8 C 1.46951 * 120.00255 * 179.68859 * 7 6 5 9 9 O 1.21664 * 119.99646 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00207 * 180.02562 * 8 7 6 11 11 C 1.36822 * 120.00023 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99629 * 33.51846 * 11 10 8 13 13 C 1.39068 * 120.00093 * 213.51924 * 11 10 8 14 14 N 1.31349 * 120.00164 * 27.22883 * 13 11 10 15 15 Si 1.86797 * 120.00028 * 207.22922 * 13 11 10 16 16 H 1.48498 * 109.47242 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47183 * 299.99792 * 15 13 11 18 18 H 1.48499 * 109.47251 * 59.99636 * 15 13 11 19 19 C 1.46498 * 119.99991 * 359.97438 * 10 8 7 20 20 C 1.50694 * 109.47378 * 275.14075 * 19 10 8 21 21 O 1.20826 * 120.00183 * 0.02562 * 20 19 10 22 22 O 1.34230 * 120.00219 * 179.97438 * 20 19 10 23 23 C 1.51449 * 107.31631 * 335.87048 * 6 5 4 24 24 H 1.08998 * 109.47532 * 298.69694 * 1 2 3 25 25 H 1.08997 * 109.47534 * 58.70288 * 1 2 3 26 26 H 1.09001 * 109.46639 * 178.70175 * 1 2 3 27 27 H 1.09003 * 110.82694 * 322.55751 * 4 2 1 28 28 H 1.08994 * 110.83396 * 86.13125 * 4 2 1 29 29 H 1.08995 * 110.57776 * 279.18746 * 5 4 2 30 30 H 1.08996 * 110.41392 * 156.58797 * 5 4 2 31 31 H 1.08006 * 120.00021 * 359.68498 * 7 6 5 32 32 H 0.97002 * 119.99804 * 5.78311 * 14 13 11 33 33 H 1.08997 * 109.46969 * 35.14471 * 19 10 8 34 34 H 1.09001 * 109.46859 * 155.14073 * 19 10 8 35 35 H 0.96699 * 117.00180 * 179.97438 * 22 20 19 36 36 H 1.09003 * 109.98434 * 119.94751 * 23 6 5 37 37 H 1.08995 * 109.98371 * 241.21016 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9118 1.0210 0.0000 4 6 2.0746 -0.7884 -1.2181 5 6 3.4851 -1.2124 -0.7310 6 6 3.2912 -1.5433 0.7383 7 6 4.0548 -2.3490 1.4728 8 6 3.7416 -2.5659 2.8921 9 8 2.7845 -2.0086 3.3958 10 7 4.5150 -3.3813 3.6360 11 6 4.2236 -3.5828 4.9575 12 1 3.1960 -3.5846 5.2897 13 6 5.2507 -3.7854 5.8730 14 7 6.4420 -3.2811 5.6457 15 14 4.9360 -4.7746 7.4260 16 1 6.1826 -4.8436 8.2300 17 1 3.8690 -4.1181 8.2234 18 1 4.5060 -6.1479 7.0595 19 6 5.6677 -4.0519 3.0295 20 6 5.2144 -5.3243 2.3614 21 8 4.0481 -5.6386 2.3885 22 8 6.1063 -6.1081 1.7352 23 6 2.0721 -0.7814 1.2148 24 1 -0.3634 0.4934 0.9014 25 1 -0.3634 0.5338 -0.8781 26 1 -0.3632 -1.0274 -0.0233 27 1 1.4535 -1.6599 -1.4248 28 1 2.1465 -0.1454 -2.0953 29 1 4.1930 -0.3917 -0.8463 30 1 3.8276 -2.0914 -1.2771 31 1 4.9046 -2.8434 1.0257 32 1 6.5846 -2.6983 4.8836 33 1 6.1221 -3.3943 2.2885 34 1 6.3988 -4.2880 3.8027 35 1 5.7682 -6.9142 1.3217 36 1 1.3159 -1.4778 1.5774 37 1 2.3522 -0.0894 2.0089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828201553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:50 Heat of formation + Delta-G solvation = -138.198975 kcal Electronic energy + Delta-G solvation = -20839.451633 eV Core-core repulsion = 17580.922102 eV Total energy + Delta-G solvation = -3258.529531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58156 -40.43214 -39.16109 -37.26691 -36.77130 -34.02024 -33.35556 -30.74141 -29.70717 -28.27538 -26.56787 -24.83885 -23.13213 -21.77539 -21.02977 -19.64575 -19.12515 -18.98085 -18.14508 -17.63563 -16.79919 -16.62327 -16.42844 -15.76456 -15.43240 -15.33561 -14.64105 -14.46470 -14.09355 -13.96556 -13.90277 -13.66375 -13.23890 -13.07564 -12.69474 -12.52858 -12.43609 -12.25083 -12.02925 -11.95067 -11.78502 -11.76456 -11.49930 -11.43652 -11.02376 -10.37489 -10.13336 -9.86896 -8.84237 -6.17873 0.46740 1.17173 1.50428 1.53044 1.79579 1.88723 2.34565 2.45599 2.83841 3.10078 3.40915 3.71388 3.85777 3.98624 4.04310 4.20793 4.36213 4.44477 4.48124 4.48681 4.55522 4.67709 4.84045 4.86699 4.96260 5.04378 5.14412 5.17997 5.29928 5.42414 5.49902 5.55583 5.56444 5.80183 5.85488 6.54081 6.80682 6.98635 7.24783 7.81378 8.39486 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.005894 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.792290 B = 4749.407822 C = 5515.320448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.088 0.912 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.044 4.044 7 C -0.230 4.230 8 C 0.487 3.513 9 O -0.611 6.611 10 N -0.449 5.449 11 C -0.420 4.420 12 H 0.049 0.951 13 C -0.020 4.020 14 N -0.876 5.876 15 Si 1.115 2.885 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.098 3.902 20 C 0.469 3.531 21 O -0.542 6.542 22 O -0.504 6.504 23 C -0.086 4.086 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.269 0.731 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.424 0.576 36 H 0.051 0.949 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 1.441 -14.966 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.106 0.894 4 C -0.147 4.147 5 C -0.128 4.128 6 C -0.047 4.047 7 C -0.251 4.251 8 C 0.281 3.719 9 O -0.497 6.497 10 N -0.169 5.169 11 C -0.547 4.547 12 H 0.067 0.933 13 C -0.223 4.223 14 N -0.511 5.511 15 Si 0.935 3.065 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.028 4.028 20 C 0.311 3.689 21 O -0.431 6.431 22 O -0.317 6.317 23 C -0.123 4.123 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.286 0.714 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.287 1.347 -13.172 13.244 hybrid contribution -1.116 -0.098 -0.981 1.489 sum -1.404 1.249 -14.153 14.277 Atomic orbital electron populations 1.21775 0.94199 1.01638 1.02245 1.22086 0.96344 0.99369 0.93670 0.89356 1.22641 0.94334 1.00149 0.97586 1.21701 0.99393 1.02964 0.88730 1.23281 0.93067 0.91102 0.97212 1.22074 1.04260 1.06159 0.92622 1.19180 0.84678 0.79793 0.88253 1.90566 1.31444 1.52517 1.75218 1.43174 1.26730 1.38051 1.08904 1.20136 0.95205 1.55273 0.84122 0.93324 1.27668 0.92058 0.97870 1.04733 1.70874 1.24468 1.26909 1.28804 0.82923 0.76686 0.75234 0.71646 1.18794 1.20262 1.20151 1.21328 0.91658 0.89952 0.99826 1.24370 0.83744 0.85976 0.74857 1.90689 1.21340 1.73268 1.57810 1.84503 1.42944 1.37994 1.66231 1.21297 0.95151 0.97819 0.98066 0.93470 0.90145 0.93506 0.91344 0.87914 0.87566 0.89178 0.84267 0.92100 0.84907 0.85805 0.71407 0.93062 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.12 71.98 0.66 -2.43 16 2 C -0.10 -2.31 3.49 -9.68 -0.03 -2.34 16 3 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.11 -2.11 6.39 32.00 0.20 -1.90 16 5 C -0.09 -2.01 6.66 30.94 0.21 -1.80 16 6 C -0.04 -1.52 6.15 -16.99 -0.10 -1.62 16 7 C -0.23 -9.26 9.04 23.40 0.21 -9.05 16 8 C 0.49 25.79 7.40 86.53 0.64 26.43 16 9 O -0.61 -36.85 13.92 -4.24 -0.06 -36.91 16 10 N -0.45 -24.00 1.89 -643.89 -1.22 -25.22 16 11 C -0.42 -25.01 8.89 84.11 0.75 -24.26 16 12 H 0.05 3.21 7.73 -2.91 -0.02 3.19 16 13 C -0.02 -1.09 4.78 84.96 0.41 -0.69 16 14 N -0.88 -47.71 12.15 21.68 0.26 -47.45 16 15 Si 1.12 48.92 30.00 68.60 2.06 50.98 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.10 4.21 4.67 85.63 0.40 4.61 16 20 C 0.47 18.60 8.17 71.23 0.58 19.19 16 21 O -0.54 -25.90 17.07 21.96 0.38 -25.52 16 22 O -0.50 -14.26 13.42 -51.42 -0.69 -14.95 16 23 C -0.09 -3.08 4.40 30.52 0.13 -2.94 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.14 4.66 6.27 -2.91 -0.02 4.65 16 32 H 0.27 14.61 7.20 -92.71 -0.67 13.95 16 33 H 0.13 4.66 6.40 -2.39 -0.02 4.65 16 34 H 0.12 5.67 5.37 -2.39 -0.01 5.66 16 35 H 0.42 7.75 9.10 -74.06 -0.67 7.08 16 36 H 0.05 2.15 7.35 -2.39 -0.02 2.14 16 37 H 0.05 2.16 7.69 -2.39 -0.02 2.15 16 Total: -1.00 -78.50 311.08 5.30 -73.20 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.52 Total: 22.68 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 4.05 Total: 3.19 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -0.95 Total: -72.67 kcal Atomic # 8 Polarization: -77.01 SS G_CDS: -0.37 Total: -77.38 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.06 Total: 50.98 kcal Total: -78.50 5.30 -73.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828201553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.999 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds