Wall clock time and date at job start Mon Mar 30 2020 00:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.62969 * 2 1 4 4 C 1.53011 * 109.78763 * 239.50411 * 2 1 3 5 5 C 1.50100 * 110.12992 * 190.43788 * 4 2 1 6 6 C 1.31645 * 123.78293 * 17.16792 * 5 4 2 7 7 C 1.46947 * 118.11348 * 179.60449 * 6 5 4 8 8 O 1.21532 * 120.00112 * 0.02562 * 7 6 5 9 9 O 1.34800 * 120.00226 * 180.02562 * 7 6 5 10 10 C 1.45193 * 117.00344 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47695 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99460 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00463 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00367 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99215 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00052 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99884 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00365 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47139 * 89.99796 * 18 16 14 20 20 H 1.48498 * 109.47517 * 209.99836 * 18 16 14 21 21 H 1.48504 * 109.47113 * 329.99898 * 18 16 14 22 22 C 1.50099 * 123.77708 * 359.58594 * 6 5 4 23 23 C 1.53006 * 110.13250 * 17.16737 * 22 6 5 24 24 H 1.09013 * 109.47042 * 299.60896 * 1 2 3 25 25 H 1.08996 * 109.47563 * 59.61192 * 1 2 3 26 26 H 1.09001 * 109.47431 * 179.61305 * 1 2 3 27 27 H 1.09000 * 109.36221 * 310.63865 * 4 2 1 28 28 H 1.08992 * 109.35969 * 70.37281 * 4 2 1 29 29 H 1.07996 * 118.10922 * 197.19855 * 5 4 2 30 30 H 1.09008 * 109.46921 * 300.00058 * 10 9 7 31 31 H 1.09004 * 109.47242 * 59.99679 * 10 9 7 32 32 H 0.96998 * 119.99886 * 359.97438 * 13 11 10 33 33 H 0.96992 * 119.99971 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.35900 * 256.96640 * 22 6 5 35 35 H 1.09003 * 109.35939 * 137.37144 * 22 6 5 36 36 H 1.09006 * 109.62912 * 190.53306 * 23 22 6 37 37 H 1.09001 * 109.63366 * 69.94463 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0480 -0.7306 -1.2406 5 6 3.5270 -0.9592 -1.1255 6 6 4.1939 -0.8811 0.0068 7 6 5.6405 -1.1376 -0.0224 8 8 6.1879 -1.4122 -1.0722 9 8 6.3604 -1.0684 1.1151 10 6 7.7843 -1.3331 1.0112 11 6 8.4188 -1.2101 2.3726 12 8 7.7378 -0.9277 3.3357 13 7 9.7426 -1.4150 2.5201 14 6 10.3198 -1.3037 3.7587 15 1 9.7135 -1.0514 4.6162 16 6 11.6845 -1.5155 3.9108 17 7 12.2378 -1.4083 5.0980 18 14 12.7332 -1.9512 2.4276 19 1 13.2480 -0.7064 1.8025 20 1 13.8748 -2.7968 2.8597 21 1 11.9104 -2.6967 1.4414 22 6 3.5618 -0.5447 1.3260 23 6 2.0452 -0.7308 1.2460 24 1 -0.3634 0.5078 0.8936 25 1 -0.3634 0.5198 -0.8864 26 1 -0.3634 -1.0276 -0.0069 27 1 1.5401 -1.6907 -1.3330 28 1 1.8453 -0.1279 -2.1258 29 1 4.0758 -1.2012 -2.0236 30 1 7.9393 -2.3415 0.6274 31 1 8.2394 -0.6119 0.3322 32 1 10.2870 -1.6420 1.7500 33 1 13.1906 -1.5558 5.2041 34 1 3.7858 0.4913 1.5803 35 1 3.9661 -1.1997 2.0978 36 1 1.5773 -0.3108 2.1365 37 1 1.8099 -1.7925 1.1714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838345611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:44 Heat of formation + Delta-G solvation = -122.575733 kcal Electronic energy + Delta-G solvation = -19727.581555 eV Core-core repulsion = 16469.729498 eV Total energy + Delta-G solvation = -3257.852057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51804 -38.81026 -38.13234 -36.14642 -34.04473 -33.15392 -31.78354 -31.03502 -28.81761 -27.26995 -24.56048 -23.33695 -22.59866 -20.80726 -19.62569 -18.62615 -18.31881 -17.49247 -16.58922 -16.35312 -15.64164 -14.96150 -14.76676 -14.52632 -14.18025 -13.99496 -13.72941 -13.38943 -13.09489 -12.89772 -12.60057 -12.44981 -12.31708 -12.21193 -12.08253 -11.82072 -11.25442 -11.09892 -10.82024 -10.63988 -10.51332 -10.47727 -10.29049 -10.03739 -9.66219 -9.27523 -8.64611 -8.27881 -6.38058 -3.90859 1.10137 2.70383 2.94624 3.00005 3.04521 3.13007 3.57735 4.04910 4.29492 4.37455 4.52933 4.64048 4.82179 5.00465 5.04156 5.12643 5.19298 5.27470 5.34099 5.37545 5.40360 5.57420 5.58279 5.61269 5.69325 5.73055 5.87075 5.90465 5.93099 6.15792 6.23050 6.43869 6.55781 7.46384 7.83838 8.02446 8.49447 8.85027 9.31347 9.67393 10.74315 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.045299 B = 0.003433 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.969418 B = 8153.604038 C = 8712.150786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.089 4.089 5 C -0.071 4.071 6 C -0.143 4.143 7 C 0.494 3.506 8 O -0.521 6.521 9 O -0.318 6.318 10 C 0.057 3.943 11 C 0.449 3.551 12 O -0.556 6.556 13 N -0.580 5.580 14 C -0.308 4.308 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.876 5.876 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.268 1.268 22 C -0.082 4.082 23 C -0.115 4.115 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.373 0.627 33 H 0.275 0.725 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 0.948 -13.717 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.125 4.125 5 C -0.089 4.089 6 C -0.144 4.144 7 C 0.340 3.660 8 O -0.412 6.412 9 O -0.232 6.232 10 C -0.021 4.021 11 C 0.234 3.766 12 O -0.438 6.438 13 N -0.220 5.220 14 C -0.436 4.436 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.515 5.515 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.194 1.194 22 C -0.118 4.118 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.206 0.794 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.082 1.049 -13.184 23.217 hybrid contribution 1.362 -0.452 -1.254 1.906 sum -17.721 0.597 -14.438 22.866 Atomic orbital electron populations 1.21818 0.94779 1.01914 1.01847 1.21270 0.95681 0.99995 0.94735 0.90580 1.20657 0.91418 1.01498 0.98961 1.22964 0.96459 0.92223 0.97271 1.20141 0.89329 1.07260 0.97651 1.21674 0.89034 0.73610 0.81706 1.90816 1.72702 1.45600 1.32084 1.86655 1.21530 1.80505 1.34496 1.22746 0.78043 1.02625 0.98643 1.19191 0.83035 0.85505 0.88901 1.90601 1.61586 1.51307 1.40292 1.42036 1.06455 1.63282 1.10275 1.19426 0.92726 1.45651 0.85774 0.86010 1.25033 0.96507 0.97380 0.96992 1.69615 1.12452 1.47804 1.21634 0.86676 0.81090 0.79323 0.82401 1.19416 1.19962 1.19356 1.20376 0.94544 1.03241 0.93682 1.21702 0.94906 1.00829 0.97773 0.92384 0.92673 0.92584 0.89519 0.89944 0.85737 0.89471 0.89471 0.79397 0.91407 0.89968 0.89290 0.90951 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.10 -0.73 2.76 -90.43 -0.25 -0.98 16 3 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 4 C -0.09 -0.65 5.43 -28.17 -0.15 -0.80 16 5 C -0.07 -0.73 9.42 -36.47 -0.34 -1.08 16 6 C -0.14 -1.82 5.79 -103.26 -0.60 -2.41 16 7 C 0.49 8.05 7.84 34.26 0.27 8.32 16 8 O -0.52 -9.20 15.75 -19.29 -0.30 -9.50 16 9 O -0.32 -5.92 9.07 -47.45 -0.43 -6.35 16 10 C 0.06 1.06 5.95 36.01 0.21 1.28 16 11 C 0.45 10.56 7.86 -10.99 -0.09 10.47 16 12 O -0.56 -15.40 16.08 -14.11 -0.23 -15.62 16 13 N -0.58 -13.95 5.09 -10.97 -0.06 -14.01 16 14 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 15 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 16 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 17 N -0.88 -25.31 13.96 55.50 0.77 -24.53 16 18 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 22 C -0.08 -0.94 5.45 -28.17 -0.15 -1.09 16 23 C -0.11 -0.99 5.29 -26.54 -0.14 -1.13 16 24 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.12 1.34 7.17 -52.49 -0.38 0.97 16 30 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 33 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -33.10 315.09 -6.58 -39.68 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.22 Total: 6.73 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.15 Total: 4.36 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.72 Total: -38.54 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.96 Total: -31.48 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.10 -6.58 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838345611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.895 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds