Wall clock time and date at job start Mon Mar 30 2020 00:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.62969 * 2 1 4 4 C 1.53011 * 109.78763 * 239.50411 * 2 1 3 5 5 C 1.50100 * 110.12992 * 190.43788 * 4 2 1 6 6 C 1.31645 * 123.78293 * 17.16792 * 5 4 2 7 7 C 1.46947 * 118.11348 * 179.60449 * 6 5 4 8 8 O 1.21532 * 120.00112 * 0.02562 * 7 6 5 9 9 O 1.34800 * 120.00226 * 180.02562 * 7 6 5 10 10 C 1.45193 * 117.00344 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47695 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99460 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00463 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00367 * 180.02562 * 13 11 10 15 15 H 1.08005 * 119.99215 * 359.97438 * 14 13 11 16 16 C 1.38942 * 120.00052 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99884 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00365 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47139 * 89.99796 * 18 16 14 20 20 H 1.48498 * 109.47517 * 209.99836 * 18 16 14 21 21 H 1.48504 * 109.47113 * 329.99898 * 18 16 14 22 22 C 1.50099 * 123.77708 * 359.58594 * 6 5 4 23 23 C 1.53006 * 110.13250 * 17.16737 * 22 6 5 24 24 H 1.09013 * 109.47042 * 299.60896 * 1 2 3 25 25 H 1.08996 * 109.47563 * 59.61192 * 1 2 3 26 26 H 1.09001 * 109.47431 * 179.61305 * 1 2 3 27 27 H 1.09000 * 109.36221 * 310.63865 * 4 2 1 28 28 H 1.08992 * 109.35969 * 70.37281 * 4 2 1 29 29 H 1.07996 * 118.10922 * 197.19855 * 5 4 2 30 30 H 1.09008 * 109.46921 * 300.00058 * 10 9 7 31 31 H 1.09004 * 109.47242 * 59.99679 * 10 9 7 32 32 H 0.96998 * 119.99886 * 359.97438 * 13 11 10 33 33 H 0.96992 * 119.99971 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.35900 * 256.96640 * 22 6 5 35 35 H 1.09003 * 109.35939 * 137.37144 * 22 6 5 36 36 H 1.09006 * 109.62912 * 190.53306 * 23 22 6 37 37 H 1.09001 * 109.63366 * 69.94463 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0480 -0.7306 -1.2406 5 6 3.5270 -0.9592 -1.1255 6 6 4.1939 -0.8811 0.0068 7 6 5.6405 -1.1376 -0.0224 8 8 6.1879 -1.4122 -1.0722 9 8 6.3604 -1.0684 1.1151 10 6 7.7843 -1.3331 1.0112 11 6 8.4188 -1.2101 2.3726 12 8 7.7378 -0.9277 3.3357 13 7 9.7426 -1.4150 2.5201 14 6 10.3198 -1.3037 3.7587 15 1 9.7135 -1.0514 4.6162 16 6 11.6845 -1.5155 3.9108 17 7 12.2378 -1.4083 5.0980 18 14 12.7332 -1.9512 2.4276 19 1 13.2480 -0.7064 1.8025 20 1 13.8748 -2.7968 2.8597 21 1 11.9104 -2.6967 1.4414 22 6 3.5618 -0.5447 1.3260 23 6 2.0452 -0.7308 1.2460 24 1 -0.3634 0.5078 0.8936 25 1 -0.3634 0.5198 -0.8864 26 1 -0.3634 -1.0276 -0.0069 27 1 1.5401 -1.6907 -1.3330 28 1 1.8453 -0.1279 -2.1258 29 1 4.0758 -1.2012 -2.0236 30 1 7.9393 -2.3415 0.6274 31 1 8.2394 -0.6119 0.3322 32 1 10.2870 -1.6420 1.7500 33 1 13.1906 -1.5558 5.2041 34 1 3.7858 0.4913 1.5803 35 1 3.9661 -1.1997 2.0978 36 1 1.5773 -0.3108 2.1365 37 1 1.8099 -1.7925 1.1714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838345611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:43 Heat of formation + Delta-G solvation = -143.666264 kcal Electronic energy + Delta-G solvation = -19728.496109 eV Core-core repulsion = 16469.729498 eV Total energy + Delta-G solvation = -3258.766611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78633 -40.32844 -39.35605 -37.53572 -36.11010 -33.96046 -33.85840 -31.81624 -30.35437 -28.10488 -26.44529 -24.13261 -23.67955 -21.61934 -21.56386 -20.54861 -19.47063 -18.51852 -17.95623 -17.74280 -17.46449 -16.78570 -15.90433 -15.59583 -15.36548 -15.16425 -14.85817 -14.61405 -14.34878 -14.18303 -14.10300 -13.79015 -13.53527 -13.24028 -13.02307 -12.88516 -12.48198 -12.46290 -12.03819 -11.99325 -11.90650 -11.61274 -11.48214 -11.25620 -11.17987 -10.63633 -10.36494 -10.15877 -8.48086 -6.11452 0.08236 1.27940 1.31851 1.36972 1.45038 1.71770 1.82052 2.18495 2.78553 3.06011 3.52244 3.66353 3.84191 3.93324 3.99111 4.06302 4.09375 4.21012 4.26317 4.55245 4.61042 4.77682 4.83221 4.92901 4.99210 5.06011 5.11060 5.19422 5.27605 5.34131 5.45607 5.49979 5.56360 5.59787 5.82688 6.43621 6.58801 6.74748 7.22867 7.74554 8.68591 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.045299 B = 0.003433 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.969418 B = 8153.604038 C = 8712.150786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.089 4.089 5 C -0.036 4.036 6 C -0.175 4.175 7 C 0.493 3.507 8 O -0.538 6.538 9 O -0.340 6.340 10 C 0.066 3.934 11 C 0.449 3.551 12 O -0.607 6.607 13 N -0.575 5.575 14 C -0.334 4.334 15 H 0.061 0.939 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.233 1.233 22 C -0.078 4.078 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.393 0.607 33 H 0.283 0.717 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.931 0.390 -17.439 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.054 4.054 6 C -0.176 4.176 7 C 0.341 3.659 8 O -0.431 6.431 9 O -0.255 6.255 10 C -0.011 4.011 11 C 0.236 3.764 12 O -0.492 6.492 13 N -0.217 5.217 14 C -0.463 4.463 15 H 0.079 0.921 16 C -0.207 4.207 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.156 1.156 22 C -0.115 4.115 23 C -0.148 4.148 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.009 0.491 -16.925 26.212 hybrid contribution 1.534 -0.246 -0.050 1.555 sum -18.475 0.244 -16.975 25.090 Atomic orbital electron populations 1.21782 0.93222 1.02526 1.02432 1.21260 0.96869 0.99467 0.93885 0.91064 1.20826 0.88909 1.02922 0.99812 1.23317 0.98116 0.87978 0.96002 1.20146 0.87544 1.10908 0.98997 1.22293 0.90049 0.72874 0.80711 1.90792 1.73214 1.46877 1.32191 1.86663 1.21511 1.81107 1.36255 1.22602 0.78416 1.05044 0.95025 1.20133 0.82629 0.83215 0.90459 1.90576 1.62784 1.53031 1.42792 1.41806 1.06960 1.63474 1.09465 1.19010 0.93210 1.48015 0.86059 0.92117 1.26092 0.97418 0.96066 1.01149 1.69779 1.13390 1.48396 1.24860 0.85408 0.78698 0.79892 0.77872 1.17872 1.19521 1.15603 1.20303 0.96628 1.01978 0.92612 1.21699 0.92559 1.01464 0.99076 0.92424 0.91553 0.91956 0.87461 0.87507 0.85783 0.86779 0.86697 0.77085 0.90755 0.90965 0.91916 0.90373 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 71.98 0.66 -0.56 16 2 C -0.10 -1.17 2.76 -10.67 -0.03 -1.20 16 3 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 4 C -0.09 -0.97 5.43 29.66 0.16 -0.81 16 5 C -0.04 -0.65 9.42 24.86 0.23 -0.42 16 6 C -0.17 -4.32 5.79 -18.41 -0.11 -4.43 16 7 C 0.49 15.80 7.84 70.10 0.55 16.35 16 8 O -0.54 -18.22 15.75 19.73 0.31 -17.91 16 9 O -0.34 -12.78 9.07 -50.72 -0.46 -13.24 16 10 C 0.07 2.39 5.95 71.24 0.42 2.82 16 11 C 0.45 21.47 7.86 87.66 0.69 22.16 16 12 O -0.61 -35.39 16.08 15.74 0.25 -35.13 16 13 N -0.58 -27.72 5.09 -306.99 -1.56 -29.28 16 14 C -0.33 -19.63 10.16 84.04 0.85 -18.78 16 15 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 16 C -0.01 -0.40 5.50 84.92 0.47 0.07 16 17 N -0.92 -55.08 13.96 21.66 0.30 -54.77 16 18 Si 0.96 38.41 27.74 68.60 1.90 40.31 16 19 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 22 C -0.08 -1.83 5.45 29.66 0.16 -1.67 16 23 C -0.11 -1.77 5.29 30.72 0.16 -1.61 16 24 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 25 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.12 2.34 7.17 -2.91 -0.02 2.32 16 30 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 31 H 0.12 3.53 8.14 -2.38 -0.02 3.51 16 32 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 33 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.75 7.93 -2.39 -0.02 1.74 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 Total: -1.00 -76.95 315.09 5.46 -71.49 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.48 Total: 26.61 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 4.23 Total: 11.92 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.26 Total: -84.05 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: 0.10 Total: -66.28 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.31 kcal Total: -76.95 5.46 -71.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838345611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.178 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds