Wall clock time and date at job start Mon Mar 30 2020 00:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47016 * 10.25934 * 3 2 1 5 5 C 1.42900 * 113.99691 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46888 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47137 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99699 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00134 * 180.02562 * 7 6 5 10 10 C 1.47018 * 125.65012 * 0.02930 * 9 7 6 11 11 C 1.54323 * 107.27556 * 181.02320 * 10 9 7 12 12 C 1.55163 * 102.93962 * 22.18595 * 11 10 9 13 13 O 1.42902 * 110.99960 * 82.58005 * 12 11 10 14 14 C 1.50698 * 111.00340 * 206.42770 * 12 11 10 15 15 H 1.07998 * 120.00009 * 118.54752 * 14 12 11 16 16 C 1.37884 * 119.99776 * 298.54653 * 14 12 11 17 17 N 1.31512 * 120.00163 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99753 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47303 * 59.99769 * 18 16 14 20 20 H 1.48495 * 109.47267 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46866 * 300.00076 * 18 16 14 22 22 C 1.47429 * 125.64786 * 179.71672 * 9 7 6 23 23 H 4.38441 * 5.44450 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 1.08995 * 109.47792 * 300.00114 * 5 4 3 27 27 H 1.09008 * 109.46914 * 60.00726 * 5 4 3 28 28 H 1.09001 * 109.47287 * 299.99939 * 6 5 4 29 29 H 1.08999 * 109.47329 * 60.00790 * 6 5 4 30 30 H 1.09006 * 109.87880 * 300.43890 * 10 9 7 31 31 H 1.08997 * 109.88450 * 61.44411 * 10 9 7 32 32 H 1.08996 * 110.72561 * 140.54777 * 11 10 9 33 33 H 1.09003 * 110.71421 * 263.82878 * 11 10 9 34 34 H 0.96695 * 114.00178 * 61.45208 * 13 12 11 35 35 H 0.97000 * 120.00013 * 179.97438 * 17 16 14 36 36 H 1.09004 * 110.36713 * 274.74520 * 22 9 7 37 37 H 1.09002 * 110.36650 * 37.06888 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.3249 -0.2400 5 6 4.5475 -1.4351 -0.2606 6 6 4.9426 -2.8895 -0.5245 7 6 6.4450 -3.0059 -0.5457 8 8 7.1320 -2.0224 -0.3677 9 7 7.0252 -4.2027 -0.7633 10 6 6.3157 -5.4695 -0.9944 11 6 7.3850 -6.5687 -1.1673 12 6 8.6260 -5.9603 -0.4620 13 8 8.5649 -6.1672 0.9506 14 6 9.9019 -6.5228 -1.0334 15 1 10.6152 -5.8669 -1.5104 16 6 10.1587 -7.8747 -0.9473 17 7 9.2899 -8.6734 -0.3669 18 14 11.7406 -8.5719 -1.6550 19 1 12.9043 -7.9420 -0.9810 20 1 11.7761 -10.0401 -1.4359 21 1 11.7988 -8.2877 -3.1114 22 6 8.4764 -4.4573 -0.8157 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 4.9497 -0.8007 -1.0504 27 1 4.9504 -1.1175 0.7012 28 1 4.5405 -3.5242 0.2651 29 1 4.5398 -3.2067 -1.4864 30 1 5.6816 -5.7006 -0.1384 31 1 5.7081 -5.3950 -1.8962 32 1 7.0745 -7.4899 -0.6744 33 1 7.5895 -6.7450 -2.2234 34 1 8.5564 -7.0982 1.2118 35 1 9.4704 -9.6246 -0.3067 36 1 8.8602 -4.2608 -1.8168 37 1 8.9962 -3.8417 -0.0816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:51 Heat of formation + Delta-G solvation = -97.091943 kcal Electronic energy + Delta-G solvation = -19931.803730 eV Core-core repulsion = 16675.056733 eV Total energy + Delta-G solvation = -3256.746997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12156 -39.35558 -38.72530 -36.07264 -34.44465 -34.20899 -32.74094 -31.28766 -29.98269 -28.05398 -27.00481 -24.75850 -23.43259 -21.56677 -20.26403 -19.33370 -19.08295 -18.43134 -17.53673 -17.15059 -16.94445 -16.72351 -16.47063 -15.88506 -15.72128 -15.34130 -14.85760 -14.51714 -13.93796 -13.66195 -13.58433 -13.52588 -13.22303 -13.01941 -12.69412 -12.63854 -12.46675 -12.45173 -12.26856 -11.84064 -11.53953 -11.45023 -11.26273 -10.97199 -10.62519 -10.57201 -10.14791 -9.59091 -8.23013 -6.37778 1.42807 1.44239 1.46379 1.52899 1.58262 1.83097 2.03775 2.40875 2.92111 3.02383 3.52877 3.65898 3.80756 4.00215 4.01646 4.13916 4.31292 4.37761 4.38673 4.45178 4.48052 4.61113 4.71300 4.79463 4.81067 4.90979 5.03686 5.18585 5.27177 5.46348 5.55863 5.78309 6.05792 6.09547 6.59540 6.60439 6.66317 7.09525 7.32189 7.40655 8.82533 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.053569 B = 0.003282 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.569347 B = 8528.494181 C = 8761.592697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.399 6.399 5 C 0.085 3.915 6 C -0.123 4.123 7 C 0.524 3.476 8 O -0.593 6.593 9 N -0.610 5.610 10 C 0.104 3.896 11 C -0.127 4.127 12 C 0.233 3.767 13 O -0.593 6.593 14 C -0.562 4.562 15 H 0.054 0.946 16 C 0.037 3.963 17 N -0.906 5.906 18 Si 0.958 3.042 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.271 1.271 22 C 0.125 3.875 23 H 0.255 0.745 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.074 0.926 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 9.269 -1.591 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.319 6.319 5 C 0.008 3.992 6 C -0.162 4.162 7 C 0.314 3.686 8 O -0.475 6.475 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.166 4.166 12 C 0.193 3.807 13 O -0.401 6.401 14 C -0.601 4.601 15 H 0.072 0.928 16 C -0.164 4.164 17 N -0.544 5.544 18 Si 0.784 3.216 19 H -0.205 1.205 20 H -0.205 1.205 21 H -0.196 1.196 22 C 0.002 3.998 23 H 0.271 0.729 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.199 10.152 -1.470 17.516 hybrid contribution 1.210 -1.008 -0.178 1.585 sum -12.988 9.144 -1.648 15.970 Atomic orbital electron populations 1.25859 0.96782 0.95842 0.99182 1.23062 0.94815 1.03798 1.02273 1.19249 0.84715 0.84573 1.02400 1.87825 1.21559 1.28936 1.93608 1.22053 0.79638 0.95773 1.01689 1.21370 0.89386 0.98557 1.06920 1.20638 0.91242 0.81064 0.75620 1.90649 1.66755 1.37382 1.52731 1.48665 1.07943 1.08410 1.69141 1.22267 0.95340 0.82396 1.01830 1.22966 0.95297 0.97325 1.01002 1.19829 0.92925 0.89041 0.78954 1.86124 1.97220 1.31627 1.25154 1.21639 1.05625 0.93589 1.39214 0.92758 1.25591 0.99476 0.96896 0.94474 1.69768 1.36107 1.05128 1.43417 0.85608 0.79828 0.77154 0.78985 1.20485 1.20476 1.19597 1.22192 0.80877 0.96763 0.99981 0.72891 0.89335 0.89561 0.91981 0.92501 0.86886 0.86091 0.90662 0.89037 0.90583 0.91872 0.77304 0.91970 0.90784 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 19.25 74.32 1.43 -1.07 16 2 C -0.24 -4.83 13.73 31.13 0.43 -4.40 16 3 C 0.17 3.18 6.41 70.18 0.45 3.63 16 4 O -0.40 -9.53 10.30 -148.98 -1.53 -11.07 16 5 C 0.09 2.06 5.23 71.98 0.38 2.44 16 6 C -0.12 -3.11 5.26 29.85 0.16 -2.95 16 7 C 0.52 18.50 7.85 87.66 0.69 19.19 16 8 O -0.59 -24.96 16.24 -3.04 -0.05 -25.01 16 9 N -0.61 -22.97 3.32 -811.35 -2.70 -25.66 16 10 C 0.10 3.40 6.48 86.73 0.56 3.96 16 11 C -0.13 -5.23 5.38 31.78 0.17 -5.06 16 12 C 0.23 11.10 0.87 -10.07 -0.01 11.09 16 13 O -0.59 -30.07 13.17 -148.98 -1.96 -32.04 16 14 C -0.56 -29.18 8.27 25.60 0.21 -28.97 16 15 H 0.05 2.84 7.79 -2.91 -0.02 2.81 16 16 C 0.04 1.88 5.29 84.66 0.45 2.33 16 17 N -0.91 -45.61 10.76 21.45 0.23 -45.37 16 18 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 C 0.12 5.55 6.09 86.93 0.53 6.08 16 23 H 0.25 1.68 7.80 -4.43 -0.03 1.64 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 27 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 3.28 7.55 -2.39 -0.02 3.26 16 33 H 0.06 2.63 8.03 -2.39 -0.02 2.61 16 34 H 0.38 19.08 7.57 -74.06 -0.56 18.52 16 35 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 36 H 0.07 3.21 8.03 -2.38 -0.02 3.19 16 37 H 0.05 2.26 8.04 -2.39 -0.02 2.25 16 Total: -1.00 -62.81 322.93 1.96 -60.86 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.50 Total: 29.31 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.44 Total: 6.26 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -2.47 Total: -71.04 kcal Atomic # 8 Polarization: -64.57 SS G_CDS: -3.55 Total: -68.11 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -62.81 1.96 -60.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.235 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds