Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47333 * 337.83375 * 3 2 1 5 5 C 1.42895 * 113.99918 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47567 * 329.99746 * 5 4 3 7 7 C 1.52998 * 109.47291 * 89.99926 * 5 4 3 8 8 C 1.50705 * 109.47000 * 210.00037 * 5 4 3 9 9 O 1.21277 * 120.00300 * 347.87294 * 8 5 4 10 10 N 1.34774 * 119.99770 * 167.87208 * 8 5 4 11 11 C 1.47426 * 125.65185 * 354.69638 * 10 8 5 12 12 C 1.54910 * 104.83245 * 155.90603 * 11 10 8 13 13 C 1.55156 * 101.58563 * 37.00494 * 12 11 10 14 14 O 1.42905 * 110.71517 * 82.86299 * 13 12 11 15 15 C 1.50692 * 110.71953 * 205.95847 * 13 12 11 16 16 H 1.08001 * 120.00480 * 116.16054 * 15 13 12 17 17 C 1.37883 * 120.00009 * 296.15399 * 15 13 12 18 18 N 1.31510 * 119.99950 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99853 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47112 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46971 * 120.00596 * 19 17 15 22 22 H 1.48501 * 109.47362 * 240.00385 * 19 17 15 23 23 C 1.47031 * 125.64692 * 174.73070 * 10 8 5 24 24 H 4.38441 * 5.44500 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.46518 * 217.83519 * 3 2 1 26 26 H 1.08994 * 109.47080 * 97.83560 * 3 2 1 27 27 H 1.09004 * 109.46945 * 64.87123 * 7 5 4 28 28 H 1.09003 * 109.47389 * 184.86437 * 7 5 4 29 29 H 1.08998 * 109.47041 * 304.86848 * 7 5 4 30 30 H 1.08999 * 110.36794 * 37.06248 * 11 10 8 31 31 H 1.09001 * 110.36442 * 274.73768 * 11 10 8 32 32 H 1.08999 * 111.00218 * 278.93018 * 12 11 10 33 33 H 1.08998 * 111.03493 * 155.09728 * 12 11 10 34 34 H 0.96700 * 113.99944 * 61.46015 * 14 13 12 35 35 H 0.97008 * 119.99977 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.87804 * 61.60797 * 23 10 8 37 37 H 1.09000 * 109.88143 * 300.44096 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2468 0.5083 5 6 4.5475 -1.3504 0.5514 6 1 4.9799 -0.7488 -0.2481 7 6 5.0551 -0.8433 1.9027 8 6 4.9521 -2.7909 0.3712 9 8 4.1178 -3.6683 0.4408 10 7 6.2410 -3.1039 0.1325 11 6 7.3336 -2.1384 -0.0857 12 6 8.6229 -2.9039 0.3036 13 6 8.3057 -4.3318 -0.2138 14 8 8.5906 -4.4384 -1.6101 15 6 9.0771 -5.3650 0.5662 16 1 8.5509 -6.0924 1.1666 17 6 10.4548 -5.3819 0.5133 18 7 11.0957 -4.4961 -0.2175 19 14 11.4109 -6.6632 1.4796 20 1 10.4626 -7.5376 2.2154 21 1 12.2194 -7.4864 0.5449 22 1 12.3108 -5.9843 2.4463 23 6 6.7904 -4.4650 0.0461 24 1 -1.0498 -0.0005 0.0000 25 1 3.0089 0.8125 0.6304 26 1 3.0092 0.1409 -1.0180 27 1 4.6923 -1.4972 2.6957 28 1 6.1451 -0.8411 1.9039 29 1 4.6895 0.1696 2.0713 30 1 7.2024 -1.2660 0.5544 31 1 7.3718 -1.8393 -1.1332 32 1 8.7666 -2.9028 1.3841 33 1 9.4930 -2.4884 -0.2046 34 1 9.5185 -4.2852 -1.8350 35 1 12.0650 -4.5077 -0.2544 36 1 6.3191 -5.0033 -0.7762 37 1 6.6202 -4.9937 0.9840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = -68.179182 kcal Electronic energy + Delta-G solvation = -20543.083003 eV Core-core repulsion = 17287.589757 eV Total energy + Delta-G solvation = -3255.493245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88053 -38.19146 -36.95929 -34.41068 -33.56429 -32.22296 -31.50533 -29.57072 -28.29818 -27.24840 -25.47152 -23.77420 -22.09676 -19.86611 -19.16484 -18.57898 -17.27571 -16.94798 -16.63264 -15.80281 -15.30980 -15.02209 -14.87464 -14.38339 -14.12548 -13.91969 -13.24151 -12.96763 -12.65765 -12.46340 -12.09472 -11.94746 -11.58955 -11.47067 -11.39637 -11.34125 -10.93579 -10.81754 -10.68649 -10.61574 -10.47593 -10.15660 -9.83986 -9.46103 -9.18176 -8.70020 -8.25902 -8.05715 -6.32762 -4.39487 2.25700 2.62905 2.97241 3.16948 3.24760 3.26901 3.32611 3.93296 4.24419 4.41390 4.69590 4.86927 4.94685 4.98774 5.02591 5.21323 5.37237 5.55003 5.60769 5.71563 5.74328 5.83393 5.92617 6.07047 6.19529 6.42724 6.64231 6.81282 6.87374 7.00895 7.24057 7.29269 7.38962 7.70092 7.98320 8.03743 8.57951 8.63848 9.27821 9.38033 10.75209 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.003986 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.004898 B = 7023.594272 C = 7079.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.188 4.188 3 C 0.168 3.832 4 O -0.352 6.352 5 C 0.077 3.923 6 H 0.085 0.915 7 C -0.171 4.171 8 C 0.524 3.476 9 O -0.532 6.532 10 N -0.607 5.607 11 C 0.088 3.912 12 C -0.136 4.136 13 C 0.247 3.753 14 O -0.585 6.585 15 C -0.533 4.533 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.124 3.876 24 H 0.222 0.778 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.384 0.616 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 11.897 1.027 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.188 4.188 3 C 0.092 3.908 4 O -0.270 6.270 5 C 0.015 3.985 6 H 0.103 0.897 7 C -0.229 4.229 8 C 0.310 3.690 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.034 4.034 12 C -0.175 4.175 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.571 4.571 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.003 3.997 24 H 0.238 0.762 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.234 0.766 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.764 11.216 1.059 14.909 hybrid contribution 1.259 -0.213 0.434 1.349 sum -8.506 11.003 1.493 13.987 Atomic orbital electron populations 1.24932 0.95851 0.98155 1.00493 1.22480 0.93836 1.01755 1.00729 1.19183 0.84978 0.87472 0.99139 1.88116 1.19435 1.34547 1.84938 1.21886 0.82135 0.95155 0.99285 0.89714 1.22268 1.02355 1.01859 0.96411 1.19794 0.81346 0.90074 0.77769 1.90690 1.49679 1.49771 1.50735 1.48561 1.06602 1.09696 1.69268 1.22651 0.88423 0.92148 1.00181 1.23319 0.94419 0.98181 1.01547 1.19460 0.87889 0.91535 0.80409 1.86130 1.33320 1.94617 1.25401 1.21557 0.91501 1.15548 1.28536 0.91667 1.24982 0.97580 0.95592 0.94868 1.69649 1.08903 1.34986 1.40122 0.86351 0.79677 0.81241 0.79660 1.19564 1.20757 1.20838 1.22091 0.94920 0.81614 1.01109 0.76158 0.90644 0.90650 0.91010 0.90161 0.91321 0.91840 0.91786 0.91325 0.89402 0.76556 0.92226 0.91958 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 19.25 29.55 0.57 -1.28 16 2 C -0.19 -2.31 13.73 -37.12 -0.51 -2.82 16 3 C 0.17 1.90 6.22 34.37 0.21 2.12 16 4 O -0.35 -5.48 9.51 -54.84 -0.52 -6.00 16 5 C 0.08 1.10 2.42 -27.88 -0.07 1.03 16 6 H 0.09 0.98 7.52 -51.93 -0.39 0.59 16 7 C -0.17 -2.03 9.37 37.16 0.35 -1.68 16 8 C 0.52 10.10 7.15 -10.98 -0.08 10.02 16 9 O -0.53 -12.47 16.88 -14.05 -0.24 -12.71 16 10 N -0.61 -11.78 3.33 -170.51 -0.57 -12.35 16 11 C 0.09 1.50 6.50 -2.53 -0.02 1.48 16 12 C -0.14 -2.78 5.56 -24.58 -0.14 -2.91 16 13 C 0.25 5.82 0.85 -89.94 -0.08 5.74 16 14 O -0.59 -14.42 13.06 -35.23 -0.46 -14.88 16 15 C -0.53 -13.68 8.22 -34.44 -0.28 -13.96 16 16 H 0.07 1.69 7.56 -52.49 -0.40 1.30 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 18 N -0.90 -22.43 10.69 55.43 0.59 -21.84 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 24 H 0.22 1.40 7.80 -54.10 -0.42 0.97 16 25 H 0.08 0.65 7.78 -51.93 -0.40 0.24 16 26 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.89 5.96 -51.93 -0.31 0.58 16 29 H 0.07 0.63 7.78 -51.93 -0.40 0.22 16 30 H 0.06 0.86 5.47 -51.93 -0.28 0.57 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.09 1.86 7.64 -51.93 -0.40 1.46 16 34 H 0.38 9.43 7.28 45.56 0.33 9.76 16 35 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 37 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -30.67 316.33 -5.91 -36.58 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.31 Total: 9.30 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.15 Total: 2.21 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.03 Total: -34.19 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.22 Total: -33.60 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.67 -5.91 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.601 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds