Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47333 * 337.83375 * 3 2 1 5 5 C 1.42895 * 113.99918 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47567 * 329.99746 * 5 4 3 7 7 C 1.52998 * 109.47291 * 89.99926 * 5 4 3 8 8 C 1.50705 * 109.47000 * 210.00037 * 5 4 3 9 9 O 1.21277 * 120.00300 * 347.87294 * 8 5 4 10 10 N 1.34774 * 119.99770 * 167.87208 * 8 5 4 11 11 C 1.47426 * 125.65185 * 354.69638 * 10 8 5 12 12 C 1.54910 * 104.83245 * 155.90603 * 11 10 8 13 13 C 1.55156 * 101.58563 * 37.00494 * 12 11 10 14 14 O 1.42905 * 110.71517 * 82.86299 * 13 12 11 15 15 C 1.50692 * 110.71953 * 205.95847 * 13 12 11 16 16 H 1.08001 * 120.00480 * 116.16054 * 15 13 12 17 17 C 1.37883 * 120.00009 * 296.15399 * 15 13 12 18 18 N 1.31510 * 119.99950 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99853 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47112 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46971 * 120.00596 * 19 17 15 22 22 H 1.48501 * 109.47362 * 240.00385 * 19 17 15 23 23 C 1.47031 * 125.64692 * 174.73070 * 10 8 5 24 24 H 4.38441 * 5.44500 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.46518 * 217.83519 * 3 2 1 26 26 H 1.08994 * 109.47080 * 97.83560 * 3 2 1 27 27 H 1.09004 * 109.46945 * 64.87123 * 7 5 4 28 28 H 1.09003 * 109.47389 * 184.86437 * 7 5 4 29 29 H 1.08998 * 109.47041 * 304.86848 * 7 5 4 30 30 H 1.08999 * 110.36794 * 37.06248 * 11 10 8 31 31 H 1.09001 * 110.36442 * 274.73768 * 11 10 8 32 32 H 1.08999 * 111.00218 * 278.93018 * 12 11 10 33 33 H 1.08998 * 111.03493 * 155.09728 * 12 11 10 34 34 H 0.96700 * 113.99944 * 61.46015 * 14 13 12 35 35 H 0.97008 * 119.99977 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.87804 * 61.60797 * 23 10 8 37 37 H 1.09000 * 109.88143 * 300.44096 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2468 0.5083 5 6 4.5475 -1.3504 0.5514 6 1 4.9799 -0.7488 -0.2481 7 6 5.0551 -0.8433 1.9027 8 6 4.9521 -2.7909 0.3712 9 8 4.1178 -3.6683 0.4408 10 7 6.2410 -3.1039 0.1325 11 6 7.3336 -2.1384 -0.0857 12 6 8.6229 -2.9039 0.3036 13 6 8.3057 -4.3318 -0.2138 14 8 8.5906 -4.4384 -1.6101 15 6 9.0771 -5.3650 0.5662 16 1 8.5509 -6.0924 1.1666 17 6 10.4548 -5.3819 0.5133 18 7 11.0957 -4.4961 -0.2175 19 14 11.4109 -6.6632 1.4796 20 1 10.4626 -7.5376 2.2154 21 1 12.2194 -7.4864 0.5449 22 1 12.3108 -5.9843 2.4463 23 6 6.7904 -4.4650 0.0461 24 1 -1.0498 -0.0005 0.0000 25 1 3.0089 0.8125 0.6304 26 1 3.0092 0.1409 -1.0180 27 1 4.6923 -1.4972 2.6957 28 1 6.1451 -0.8411 1.9039 29 1 4.6895 0.1696 2.0713 30 1 7.2024 -1.2660 0.5544 31 1 7.3718 -1.8393 -1.1332 32 1 8.7666 -2.9028 1.3841 33 1 9.4930 -2.4884 -0.2046 34 1 9.5185 -4.2852 -1.8350 35 1 12.0650 -4.5077 -0.2544 36 1 6.3191 -5.0033 -0.7762 37 1 6.6202 -4.9937 0.9840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = -89.790714 kcal Electronic energy + Delta-G solvation = -20544.020149 eV Core-core repulsion = 17287.589757 eV Total energy + Delta-G solvation = -3256.430392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33868 -39.53301 -38.48067 -36.16563 -34.43959 -34.17748 -32.66804 -31.14534 -29.96335 -28.08958 -27.21420 -25.15168 -23.52935 -21.58827 -20.52845 -19.60713 -19.11353 -18.14914 -17.91150 -17.03736 -16.88265 -16.53655 -16.26023 -16.06390 -15.59325 -15.06108 -14.80672 -14.32374 -13.88514 -13.76600 -13.65150 -13.31893 -13.22392 -13.15906 -12.95275 -12.66055 -12.62378 -12.26202 -12.25622 -11.94284 -11.70931 -11.57142 -11.27908 -10.92543 -10.64273 -10.47199 -10.12942 -9.66968 -8.24997 -6.38198 1.30423 1.40511 1.45603 1.50327 1.55139 1.81810 1.97295 2.40046 2.99003 3.01012 3.38503 3.63561 3.84258 3.88350 3.95029 4.04186 4.23877 4.27169 4.37862 4.46608 4.54916 4.59957 4.74364 4.78888 4.90145 5.01381 5.15504 5.21458 5.23600 5.46684 5.54841 5.77227 5.98924 6.08888 6.53811 6.59640 6.65076 7.07547 7.32104 7.43518 8.81497 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.003986 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.004898 B = 7023.594272 C = 7079.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.239 4.239 3 C 0.161 3.839 4 O -0.387 6.387 5 C 0.085 3.915 6 H 0.122 0.878 7 C -0.166 4.166 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.126 4.126 13 C 0.235 3.765 14 O -0.594 6.594 15 C -0.562 4.562 16 H 0.049 0.951 17 C 0.039 3.961 18 N -0.904 5.904 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.280 1.280 22 H -0.273 1.273 23 C 0.129 3.871 24 H 0.254 0.746 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.381 0.619 35 H 0.272 0.728 36 H 0.039 0.961 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 14.334 1.366 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.239 4.239 3 C 0.086 3.914 4 O -0.307 6.307 5 C 0.025 3.975 6 H 0.139 0.861 7 C -0.223 4.223 8 C 0.304 3.696 9 O -0.465 6.465 10 N -0.340 5.340 11 C -0.025 4.025 12 C -0.165 4.165 13 C 0.195 3.805 14 O -0.403 6.403 15 C -0.600 4.600 16 H 0.067 0.933 17 C -0.162 4.162 18 N -0.543 5.543 19 Si 0.784 3.216 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.199 1.199 23 C 0.006 3.994 24 H 0.270 0.730 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.672 13.694 1.392 16.823 hybrid contribution 1.162 -1.006 0.296 1.565 sum -8.511 12.688 1.688 15.371 Atomic orbital electron populations 1.25869 0.96886 0.96363 0.98988 1.23135 0.95044 1.03427 1.02278 1.19509 0.84704 0.86542 1.00605 1.88067 1.19925 1.37200 1.85496 1.21916 0.82316 0.91345 1.01963 0.86094 1.22277 1.02873 1.03174 0.93995 1.20921 0.80377 0.92217 0.76050 1.90656 1.51024 1.51940 1.52923 1.48613 1.07544 1.08747 1.69122 1.22750 0.85448 0.92307 1.01977 1.23100 0.96088 0.96474 1.00842 1.19590 0.88058 0.93156 0.79659 1.86116 1.33107 1.94855 1.26257 1.21738 0.92372 1.16461 1.29461 0.93298 1.25541 0.98012 0.97089 0.95586 1.69689 1.09253 1.35299 1.40052 0.85514 0.78312 0.79207 0.78582 1.20306 1.20531 1.19866 1.21806 0.94612 0.83587 0.99437 0.73001 0.87584 0.89059 0.93070 0.89107 0.87790 0.87183 0.90555 0.91937 0.89982 0.76807 0.91809 0.94237 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 19.25 74.32 1.43 -1.68 16 2 C -0.24 -5.49 13.73 31.12 0.43 -5.07 16 3 C 0.16 3.25 6.22 70.18 0.44 3.69 16 4 O -0.39 -11.45 9.51 -130.23 -1.24 -12.69 16 5 C 0.09 2.23 2.42 29.85 0.07 2.30 16 6 H 0.12 2.27 7.52 -2.39 -0.02 2.25 16 7 C -0.17 -3.36 9.37 71.98 0.67 -2.69 16 8 C 0.52 19.63 7.15 87.66 0.63 20.25 16 9 O -0.59 -28.22 16.88 15.73 0.27 -27.95 16 10 N -0.61 -23.21 3.33 -811.77 -2.70 -25.91 16 11 C 0.10 3.02 6.50 86.86 0.56 3.58 16 12 C -0.13 -5.04 5.56 31.99 0.18 -4.86 16 13 C 0.24 11.23 0.85 -10.36 -0.01 11.22 16 14 O -0.59 -29.66 13.06 -148.98 -1.95 -31.61 16 15 C -0.56 -29.45 8.22 25.60 0.21 -29.24 16 16 H 0.05 2.64 7.56 -2.91 -0.02 2.62 16 17 C 0.04 1.98 5.29 84.66 0.45 2.42 16 18 N -0.90 -44.75 10.69 21.45 0.23 -44.52 16 19 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C 0.13 5.94 6.23 86.73 0.54 6.48 16 24 H 0.25 2.50 7.80 -4.43 -0.03 2.46 16 25 H 0.11 1.41 7.78 -2.39 -0.02 1.40 16 26 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 27 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.09 1.63 5.96 -2.39 -0.01 1.62 16 29 H 0.10 1.40 7.78 -2.39 -0.02 1.38 16 30 H 0.11 2.47 5.47 -2.39 -0.01 2.45 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 33 H 0.08 3.37 7.64 -2.39 -0.02 3.35 16 34 H 0.38 18.93 7.28 -74.06 -0.54 18.39 16 35 H 0.27 12.78 8.31 -92.70 -0.77 12.01 16 36 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 37 H 0.06 2.80 7.66 -2.39 -0.02 2.79 16 Total: -1.00 -69.01 316.33 2.77 -66.23 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.54 Total: 27.17 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.60 Total: 6.41 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -2.47 Total: -70.43 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -2.92 Total: -72.26 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -69.01 2.77 -66.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.558 kcal (2) G-P(sol) polarization free energy of solvation -69.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds