Wall clock time and date at job start Mon Mar 30 2020 00:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47410 * 70.40840 * 3 2 1 5 5 C 1.42906 * 114.00485 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46425 * 30.00007 * 5 4 3 7 7 C 1.52996 * 109.47206 * 269.99965 * 5 4 3 8 8 C 1.50698 * 109.47119 * 149.99558 * 5 4 3 9 9 O 1.21282 * 120.00468 * 5.00711 * 8 5 4 10 10 N 1.34777 * 119.99595 * 185.00135 * 8 5 4 11 11 C 1.47419 * 125.65393 * 359.97438 * 10 8 5 12 12 C 1.54908 * 104.83608 * 155.91645 * 11 10 8 13 13 C 1.55160 * 101.58084 * 37.01081 * 12 11 10 14 14 O 1.42897 * 110.71876 * 82.86156 * 13 12 11 15 15 C 1.50696 * 110.71738 * 205.95818 * 13 12 11 16 16 H 1.07996 * 120.00628 * 22.20521 * 15 13 12 17 17 C 1.37877 * 119.99627 * 202.19988 * 15 13 12 18 18 N 1.31510 * 120.00259 * 174.00446 * 17 15 13 19 19 Si 1.86808 * 120.00176 * 354.00268 * 17 15 13 20 20 H 1.48499 * 109.46928 * 86.79030 * 19 17 15 21 21 H 1.48495 * 109.47170 * 206.79332 * 19 17 15 22 22 H 1.48504 * 109.46684 * 326.79327 * 19 17 15 23 23 C 1.47026 * 125.64361 * 180.02562 * 10 8 5 24 24 H 4.38441 * 5.44443 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47179 * 310.40490 * 3 2 1 26 26 H 1.09006 * 109.47068 * 190.40895 * 3 2 1 27 27 H 1.09003 * 109.46844 * 60.00023 * 7 5 4 28 28 H 1.08996 * 109.46974 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.47075 * 299.99769 * 7 5 4 30 30 H 1.09013 * 110.36219 * 37.07851 * 11 10 8 31 31 H 1.08997 * 110.46318 * 274.80441 * 11 10 8 32 32 H 1.09001 * 111.00154 * 278.93675 * 12 11 10 33 33 H 1.09000 * 111.04026 * 155.10301 * 12 11 10 34 34 H 0.96707 * 114.00035 * 56.23364 * 14 13 12 35 35 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.88453 * 61.59964 * 23 10 8 37 37 H 1.09001 * 109.88338 * 300.42653 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.4509 -1.2692 5 6 4.5472 -0.4875 -1.3757 6 1 4.9799 -0.6832 -0.3946 7 6 5.0544 0.8583 -1.8977 8 6 4.9515 -1.5813 -2.3303 9 8 4.1036 -2.2020 -2.9357 10 7 6.2556 -1.8696 -2.5113 11 6 7.3850 -1.1971 -1.8439 12 6 8.5387 -2.2302 -1.8791 13 6 8.3242 -2.8895 -3.2672 14 8 8.9180 -2.0994 -4.2993 15 6 8.8802 -4.2900 -3.2838 16 1 9.0159 -4.8283 -2.3574 17 6 9.2156 -4.8843 -4.4819 18 7 9.8094 -6.0577 -4.4903 19 14 8.8267 -4.0228 -6.0931 20 1 9.9392 -3.1039 -6.4441 21 1 8.6620 -5.0340 -7.1680 22 1 7.5697 -3.2454 -5.9479 23 6 6.7875 -2.9062 -3.4080 24 1 -1.0499 0.0001 -0.0002 25 1 3.0096 -0.6653 0.7825 26 1 3.0089 1.0116 0.1857 27 1 4.7619 1.6493 -1.2071 28 1 6.1410 0.8304 -1.9785 29 1 4.6216 1.0539 -2.8788 30 1 7.1258 -0.9528 -0.8136 31 1 7.6666 -0.2953 -2.3874 32 1 8.4323 -2.9620 -1.0783 33 1 9.5086 -1.7356 -1.8271 34 1 9.8605 -1.9265 -4.1692 35 1 10.0450 -6.4760 -5.3332 36 1 6.5073 -2.6850 -4.4379 37 1 6.3992 -3.8825 -3.1175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:51 Heat of formation + Delta-G solvation = -61.963031 kcal Electronic energy + Delta-G solvation = -20669.730206 eV Core-core repulsion = 17414.506513 eV Total energy + Delta-G solvation = -3255.223693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.02815 -38.40935 -37.19513 -34.84529 -33.61615 -32.41262 -31.65746 -29.98260 -28.48657 -27.29129 -25.52137 -23.85258 -22.38681 -19.98491 -19.33067 -18.66815 -17.51590 -17.07774 -16.67038 -15.84634 -15.52853 -15.37422 -15.06285 -14.53363 -14.29062 -13.79725 -13.42558 -13.03368 -12.93515 -12.54667 -12.45730 -12.26783 -11.97435 -11.83162 -11.54289 -11.42142 -10.99884 -10.84117 -10.73108 -10.63071 -10.32736 -10.21875 -9.89857 -9.34129 -9.22264 -8.70124 -8.55700 -8.14614 -6.22616 -4.35879 2.21359 2.59843 2.89977 3.16676 3.44992 3.53641 3.68608 3.86947 4.34671 4.47350 4.58762 4.75403 4.89302 4.95500 5.00948 5.11256 5.12782 5.16495 5.41358 5.50836 5.51512 5.66039 5.68481 5.89415 5.99876 6.06261 6.46148 6.53915 6.60215 6.66381 6.91586 6.97836 7.36015 7.43867 7.90955 8.09919 8.50346 8.58882 8.78641 9.38844 10.86059 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.004511 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.280397 B = 6205.070903 C = 6402.077385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.076 3.924 6 H 0.087 0.913 7 C -0.174 4.174 8 C 0.523 3.477 9 O -0.527 6.527 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.148 4.148 13 C 0.220 3.780 14 O -0.563 6.563 15 C -0.554 4.554 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.886 5.886 19 Si 0.942 3.058 20 H -0.289 1.289 21 H -0.322 1.322 22 H -0.268 1.268 23 C 0.115 3.885 24 H 0.222 0.778 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.372 0.628 35 H 0.268 0.732 36 H 0.067 0.933 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 15.024 9.962 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.190 4.190 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.015 3.985 6 H 0.105 0.895 7 C -0.232 4.232 8 C 0.309 3.691 9 O -0.402 6.402 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.187 4.187 13 C 0.179 3.821 14 O -0.371 6.371 15 C -0.591 4.591 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.520 5.520 19 Si 0.777 3.223 20 H -0.217 1.217 21 H -0.253 1.253 22 H -0.193 1.193 23 C -0.006 4.006 24 H 0.239 0.761 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.220 0.780 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.628 14.472 9.177 19.186 hybrid contribution 0.434 0.409 -0.349 0.691 sum -8.194 14.881 8.828 19.145 Atomic orbital electron populations 1.24949 0.95864 1.00527 0.97914 1.22463 0.93829 1.00737 1.01922 1.19175 0.85033 0.99655 0.86814 1.88125 1.19314 1.87231 1.32306 1.21880 0.82316 0.95133 0.99155 0.89518 1.22303 1.02550 0.95323 1.02991 1.19843 0.81474 0.84236 0.83557 1.90715 1.49432 1.51724 1.48368 1.48634 1.04292 1.37229 1.44391 1.22454 0.87373 0.96598 0.96195 1.23408 0.96628 0.97530 1.01091 1.20072 0.88587 0.90576 0.82837 1.86152 1.27800 1.73751 1.49389 1.21170 1.44875 0.97494 0.95543 0.90028 1.25139 0.92697 0.94598 1.00488 1.69952 1.38187 1.16177 1.27712 0.85824 0.79943 0.76444 0.80128 1.21659 1.25309 1.19340 1.22734 0.94387 0.90173 0.93329 0.76134 0.90641 0.90682 0.91373 0.90200 0.91040 0.91685 0.91329 0.90164 0.90384 0.77996 0.92311 0.91462 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.19 -2.28 13.73 -37.13 -0.51 -2.79 16 3 C 0.17 1.83 6.22 34.37 0.21 2.05 16 4 O -0.35 -5.30 9.48 -55.09 -0.52 -5.82 16 5 C 0.08 1.03 2.48 -27.89 -0.07 0.96 16 6 H 0.09 0.90 7.26 -51.93 -0.38 0.53 16 7 C -0.17 -1.88 9.39 37.16 0.35 -1.53 16 8 C 0.52 9.74 7.24 -10.99 -0.08 9.66 16 9 O -0.53 -12.29 16.83 -14.30 -0.24 -12.53 16 10 N -0.61 -11.14 3.33 -170.52 -0.57 -11.71 16 11 C 0.10 1.37 5.33 -2.53 -0.01 1.36 16 12 C -0.15 -2.44 6.21 -24.58 -0.15 -2.59 16 13 C 0.22 4.66 0.68 -89.93 -0.06 4.60 16 14 O -0.56 -11.57 8.68 -35.23 -0.31 -11.87 16 15 C -0.55 -14.35 8.72 -34.44 -0.30 -14.65 16 16 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 17 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 18 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 19 Si 0.94 23.39 24.94 -169.99 -4.24 19.16 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.32 -8.25 7.11 56.52 0.40 -7.85 16 22 H -0.27 -6.72 5.26 56.52 0.30 -6.42 16 23 C 0.11 2.53 5.72 -3.06 -0.02 2.51 16 24 H 0.22 1.37 7.80 -54.10 -0.42 0.94 16 25 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 27 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 28 H 0.08 0.79 5.56 -51.93 -0.29 0.50 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 7.33 -51.92 -0.38 0.33 16 31 H 0.07 0.88 7.16 -51.93 -0.37 0.51 16 32 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 33 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.37 6.41 9.06 45.56 0.41 6.83 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.62 6.45 -51.93 -0.33 1.29 16 37 H 0.08 1.96 7.82 -51.93 -0.41 1.56 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -34.77 309.95 -4.92 -39.70 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.32 Total: 3.34 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.17 Total: 0.35 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.21 Total: -36.99 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.07 Total: -30.23 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.24 Total: 19.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.77 -4.92 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.267 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds