Wall clock time and date at job start Mon Mar 30 2020 00:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47410 * 70.40840 * 3 2 1 5 5 C 1.42906 * 114.00485 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46425 * 30.00007 * 5 4 3 7 7 C 1.52996 * 109.47206 * 269.99965 * 5 4 3 8 8 C 1.50698 * 109.47119 * 149.99558 * 5 4 3 9 9 O 1.21282 * 120.00468 * 5.00711 * 8 5 4 10 10 N 1.34777 * 119.99595 * 185.00135 * 8 5 4 11 11 C 1.47419 * 125.65393 * 359.97438 * 10 8 5 12 12 C 1.54908 * 104.83608 * 155.91645 * 11 10 8 13 13 C 1.55160 * 101.58084 * 37.01081 * 12 11 10 14 14 O 1.42897 * 110.71876 * 82.86156 * 13 12 11 15 15 C 1.50696 * 110.71738 * 205.95818 * 13 12 11 16 16 H 1.07996 * 120.00628 * 22.20521 * 15 13 12 17 17 C 1.37877 * 119.99627 * 202.19988 * 15 13 12 18 18 N 1.31510 * 120.00259 * 174.00446 * 17 15 13 19 19 Si 1.86808 * 120.00176 * 354.00268 * 17 15 13 20 20 H 1.48499 * 109.46928 * 86.79030 * 19 17 15 21 21 H 1.48495 * 109.47170 * 206.79332 * 19 17 15 22 22 H 1.48504 * 109.46684 * 326.79327 * 19 17 15 23 23 C 1.47026 * 125.64361 * 180.02562 * 10 8 5 24 24 H 4.38441 * 5.44443 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47179 * 310.40490 * 3 2 1 26 26 H 1.09006 * 109.47068 * 190.40895 * 3 2 1 27 27 H 1.09003 * 109.46844 * 60.00023 * 7 5 4 28 28 H 1.08996 * 109.46974 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.47075 * 299.99769 * 7 5 4 30 30 H 1.09013 * 110.36219 * 37.07851 * 11 10 8 31 31 H 1.08997 * 110.46318 * 274.80441 * 11 10 8 32 32 H 1.09001 * 111.00154 * 278.93675 * 12 11 10 33 33 H 1.09000 * 111.04026 * 155.10301 * 12 11 10 34 34 H 0.96707 * 114.00035 * 56.23364 * 14 13 12 35 35 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.88453 * 61.59964 * 23 10 8 37 37 H 1.09001 * 109.88338 * 300.42653 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.4509 -1.2692 5 6 4.5472 -0.4875 -1.3757 6 1 4.9799 -0.6832 -0.3946 7 6 5.0544 0.8583 -1.8977 8 6 4.9515 -1.5813 -2.3303 9 8 4.1036 -2.2020 -2.9357 10 7 6.2556 -1.8696 -2.5113 11 6 7.3850 -1.1971 -1.8439 12 6 8.5387 -2.2302 -1.8791 13 6 8.3242 -2.8895 -3.2672 14 8 8.9180 -2.0994 -4.2993 15 6 8.8802 -4.2900 -3.2838 16 1 9.0159 -4.8283 -2.3574 17 6 9.2156 -4.8843 -4.4819 18 7 9.8094 -6.0577 -4.4903 19 14 8.8267 -4.0228 -6.0931 20 1 9.9392 -3.1039 -6.4441 21 1 8.6620 -5.0340 -7.1680 22 1 7.5697 -3.2454 -5.9479 23 6 6.7875 -2.9062 -3.4080 24 1 -1.0499 0.0001 -0.0002 25 1 3.0096 -0.6653 0.7825 26 1 3.0089 1.0116 0.1857 27 1 4.7619 1.6493 -1.2071 28 1 6.1410 0.8304 -1.9785 29 1 4.6216 1.0539 -2.8788 30 1 7.1258 -0.9528 -0.8136 31 1 7.6666 -0.2953 -2.3874 32 1 8.4323 -2.9620 -1.0783 33 1 9.5086 -1.7356 -1.8271 34 1 9.8605 -1.9265 -4.1692 35 1 10.0450 -6.4760 -5.3332 36 1 6.5073 -2.6850 -4.4379 37 1 6.3992 -3.8825 -3.1175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:51 Heat of formation + Delta-G solvation = -89.370967 kcal Electronic energy + Delta-G solvation = -20670.918703 eV Core-core repulsion = 17414.506513 eV Total energy + Delta-G solvation = -3256.412190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40195 -39.69298 -38.56573 -36.42039 -34.49711 -34.43884 -32.78467 -31.34626 -30.05609 -28.08382 -27.23548 -25.22813 -23.61803 -21.60523 -20.64422 -19.59190 -19.38865 -18.19463 -17.89510 -17.12714 -16.95853 -16.71675 -16.47180 -16.17698 -15.56333 -15.03485 -14.93966 -14.34350 -14.30403 -13.98849 -13.72658 -13.52857 -13.46398 -13.31372 -12.98834 -12.60370 -12.46695 -12.33283 -12.07649 -11.98269 -11.71394 -11.57345 -11.25012 -10.93490 -10.71600 -10.51686 -10.31277 -9.66966 -8.38303 -6.51009 1.29894 1.43108 1.49153 1.51666 1.67647 1.80945 1.96611 2.39590 2.95271 2.99573 3.36530 3.53036 3.64393 3.78856 3.88509 4.00055 4.22329 4.26098 4.31510 4.46645 4.47094 4.62573 4.71769 4.80327 4.87580 4.94692 5.00621 5.14677 5.21191 5.28285 5.34309 5.52811 6.00287 6.06139 6.53411 6.58429 6.59045 7.03028 7.08852 7.30380 8.74524 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.004511 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.280397 B = 6205.070903 C = 6402.077385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.239 4.239 3 C 0.162 3.838 4 O -0.390 6.390 5 C 0.085 3.915 6 H 0.128 0.872 7 C -0.168 4.168 8 C 0.511 3.489 9 O -0.590 6.590 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.139 4.139 13 C 0.217 3.783 14 O -0.565 6.565 15 C -0.546 4.546 16 H 0.051 0.949 17 C 0.029 3.971 18 N -0.933 5.933 19 Si 0.996 3.004 20 H -0.268 1.268 21 H -0.337 1.337 22 H -0.276 1.276 23 C 0.119 3.881 24 H 0.253 0.747 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.389 0.611 35 H 0.267 0.733 36 H 0.038 0.962 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 18.580 11.873 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.310 6.310 5 C 0.025 3.975 6 H 0.145 0.855 7 C -0.225 4.225 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.344 5.344 11 C -0.023 4.023 12 C -0.177 4.177 13 C 0.177 3.823 14 O -0.375 6.375 15 C -0.584 4.584 16 H 0.069 0.931 17 C -0.172 4.172 18 N -0.571 5.571 19 Si 0.830 3.170 20 H -0.194 1.194 21 H -0.270 1.270 22 H -0.203 1.203 23 C -0.004 4.004 24 H 0.269 0.731 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.389 18.085 11.129 22.832 hybrid contribution 0.285 -0.733 -0.870 1.173 sum -8.103 17.352 10.259 21.725 Atomic orbital electron populations 1.25876 0.96929 0.99241 0.96282 1.23184 0.95138 1.02109 1.03441 1.19510 0.84578 1.01730 0.85418 1.88074 1.20187 1.87899 1.34831 1.21948 0.82257 0.94029 0.99269 0.85482 1.22318 1.03194 0.94441 1.02562 1.21056 0.80686 0.84666 0.83558 1.90677 1.51141 1.54179 1.50987 1.48683 1.05557 1.36405 1.43736 1.22785 0.84618 0.95978 0.98952 1.23322 0.99551 0.97883 0.96944 1.19871 0.87534 0.88768 0.86170 1.86082 1.29297 1.72836 1.49312 1.21501 1.43187 0.99773 0.93890 0.93072 1.25811 0.93030 0.95040 1.03292 1.70061 1.40819 1.17975 1.28220 0.84946 0.79856 0.75325 0.76914 1.19362 1.26976 1.20284 1.22275 0.95241 0.90195 0.92715 0.73102 0.89018 0.87428 0.87799 0.88644 0.93379 0.86864 0.88782 0.90897 0.87141 0.76067 0.92414 0.94330 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 19.25 74.32 1.43 -1.69 16 2 C -0.24 -5.36 13.73 31.12 0.43 -4.94 16 3 C 0.16 3.08 6.22 70.17 0.44 3.52 16 4 O -0.39 -11.09 9.48 -129.99 -1.23 -12.33 16 5 C 0.09 2.03 2.48 29.85 0.07 2.10 16 6 H 0.13 1.96 7.26 -2.39 -0.02 1.94 16 7 C -0.17 -2.89 9.39 71.98 0.68 -2.22 16 8 C 0.51 18.59 7.24 87.66 0.63 19.23 16 9 O -0.59 -28.43 16.83 15.95 0.27 -28.17 16 10 N -0.61 -21.30 3.33 -811.79 -2.70 -24.00 16 11 C 0.10 2.30 5.33 86.86 0.46 2.77 16 12 C -0.14 -4.10 6.21 31.99 0.20 -3.90 16 13 C 0.22 9.00 0.68 -10.35 -0.01 8.99 16 14 O -0.57 -21.94 8.68 -148.98 -1.29 -23.24 16 15 C -0.55 -28.75 8.72 25.60 0.22 -28.53 16 16 H 0.05 2.96 7.98 -2.91 -0.02 2.94 16 17 C 0.03 1.62 5.46 84.66 0.46 2.08 16 18 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 19 Si 1.00 49.09 24.94 68.60 1.71 50.80 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.34 -17.34 7.11 99.48 0.71 -16.64 16 22 H -0.28 -13.93 5.26 99.48 0.52 -13.40 16 23 C 0.12 5.31 5.72 86.73 0.50 5.81 16 24 H 0.25 2.48 7.80 -4.42 -0.03 2.45 16 25 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 26 H 0.11 1.26 7.87 -2.38 -0.02 1.25 16 27 H 0.10 1.08 7.87 -2.39 -0.02 1.06 16 28 H 0.09 1.33 5.56 -2.39 -0.01 1.32 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.69 7.33 -2.38 -0.02 1.68 16 31 H 0.09 1.85 7.16 -2.39 -0.02 1.83 16 32 H 0.07 2.28 7.99 -2.39 -0.02 2.26 16 33 H 0.11 2.58 8.12 -2.39 -0.02 2.57 16 34 H 0.39 12.12 9.06 -74.05 -0.67 11.45 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.04 1.92 6.45 -2.39 -0.02 1.90 16 37 H 0.05 2.49 7.82 -2.39 -0.02 2.47 16 Total: -1.00 -82.13 309.95 2.79 -79.33 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.22 Total: 10.70 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.52 Total: 3.22 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.40 Total: -80.33 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -2.26 Total: -63.73 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 1.71 Total: 50.80 kcal Total: -82.13 2.79 -79.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.037 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds