Wall clock time and date at job start Mon Mar 30 2020 00:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99905 * 2 1 4 4 O 1.20819 * 120.00030 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99748 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47005 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47182 * 180.02562 * 6 5 3 8 8 C 1.36821 * 119.99712 * 275.47797 * 7 6 5 9 9 H 1.07995 * 119.99908 * 46.14907 * 8 7 6 10 10 C 1.39073 * 119.99749 * 226.14696 * 8 7 6 11 11 N 1.31355 * 120.00123 * 27.35253 * 10 8 7 12 12 Si 1.86794 * 120.00255 * 207.35339 * 10 8 7 13 13 H 1.48501 * 109.46973 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47049 * 119.99841 * 12 10 8 15 15 H 1.48497 * 109.47491 * 240.00302 * 12 10 8 16 16 C 1.34773 * 119.99733 * 95.47409 * 7 6 5 17 17 O 1.21664 * 119.99880 * 185.70645 * 16 7 6 18 18 C 1.46947 * 120.00705 * 5.71172 * 16 7 6 19 19 C 1.32752 * 124.63371 * 246.76557 * 18 16 7 20 20 C 1.51111 * 110.73672 * 179.73394 * 19 18 16 21 21 C 1.54570 * 104.84748 * 16.86522 * 20 19 18 22 22 C 1.51116 * 124.63061 * 66.93274 * 18 16 7 23 23 H 1.09005 * 109.46838 * 60.00202 * 1 2 3 24 24 H 1.09006 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47513 * 300.00279 * 1 2 3 26 26 H 1.09006 * 109.47070 * 60.00306 * 5 3 2 27 27 H 1.08997 * 109.47470 * 300.00430 * 5 3 2 28 28 H 1.08996 * 109.47162 * 60.00216 * 6 5 3 29 29 H 1.09000 * 109.47106 * 299.99936 * 6 5 3 30 30 H 0.96993 * 120.00479 * 184.70692 * 11 10 8 31 31 H 1.07998 * 124.62807 * 359.97438 * 19 18 16 32 32 H 1.08997 * 110.36515 * 135.71595 * 20 19 18 33 33 H 1.09004 * 110.35729 * 258.02522 * 20 19 18 34 34 H 1.08999 * 110.97565 * 93.05726 * 21 20 19 35 35 H 1.09005 * 110.97971 * 216.84151 * 21 20 19 36 36 H 1.08996 * 110.51909 * 44.69158 * 22 18 16 37 37 H 1.08996 * 110.24623 * 282.45545 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1522 2.7411 1.1805 9 1 5.9006 1.9797 1.9038 10 6 7.1768 3.6428 1.4478 11 7 7.1588 4.8378 0.9028 12 14 8.5784 3.1546 2.5820 13 1 8.3657 1.7655 3.0621 14 1 9.8635 3.2306 1.8418 15 1 8.6206 4.0791 3.7433 16 6 6.1301 2.9656 -1.1608 17 8 7.3461 2.9251 -1.1735 18 6 5.3890 3.1747 -2.4123 19 6 5.3456 2.3084 -3.4173 20 6 4.4884 2.8379 -4.5435 21 6 4.3550 4.3518 -4.2616 22 6 4.5749 4.4069 -2.7326 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.9564 0.7805 -0.8892 27 1 3.9557 0.7808 0.8907 28 1 3.6101 3.2359 0.8910 29 1 3.6107 3.2363 -0.8889 30 1 7.9062 5.4419 1.0339 31 1 5.8506 1.3538 -3.4268 32 1 4.9782 2.6723 -5.5030 33 1 3.5080 2.3616 -4.5299 34 1 5.1254 4.9159 -4.7873 35 1 3.3607 4.7119 -4.5262 36 1 5.1236 5.3086 -2.4607 37 1 3.6188 4.3735 -2.2105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:38 Heat of formation + Delta-G solvation = -99.938139 kcal Electronic energy + Delta-G solvation = -20945.736526 eV Core-core repulsion = 17688.866109 eV Total energy + Delta-G solvation = -3256.870417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28207 -39.00107 -37.00716 -36.38099 -34.54848 -32.33621 -30.32432 -28.86130 -27.99061 -27.57653 -24.96919 -23.55704 -21.05293 -20.44703 -20.26547 -18.04169 -17.49140 -16.60424 -16.40206 -16.35501 -15.49419 -15.29467 -14.75516 -14.34360 -13.74700 -13.60490 -13.25286 -12.97844 -12.60218 -12.37573 -12.14503 -11.88796 -11.68086 -11.51215 -11.29068 -11.14206 -10.87941 -10.79712 -10.76429 -10.73333 -10.58155 -10.35840 -10.26628 -10.15885 -8.71282 -8.46791 -8.11143 -7.31463 -6.23474 -3.94051 2.42467 2.47643 2.86427 3.31207 3.43427 3.44026 4.08340 4.33825 4.82391 4.99118 5.06629 5.09009 5.15416 5.19878 5.28508 5.28990 5.47379 5.49043 5.61737 5.73660 5.83688 5.93461 5.99467 6.06512 6.21500 6.23782 6.36512 6.41951 6.49891 6.55440 6.74488 6.96225 7.26430 7.58796 7.93619 8.20822 8.97172 9.08612 9.54012 10.17030 10.84337 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.007874 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.795508 B = 3554.977145 C = 5083.291302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.509 6.509 5 C -0.128 4.128 6 C 0.115 3.885 7 N -0.442 5.442 8 C -0.358 4.358 9 H 0.080 0.920 10 C 0.084 3.916 11 N -0.833 5.833 12 Si 0.904 3.096 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.286 1.286 16 C 0.529 3.471 17 O -0.545 6.545 18 C -0.132 4.132 19 C -0.160 4.160 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.088 4.088 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.266 0.734 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -6.121 -5.990 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.309 3.691 4 O -0.397 6.397 5 C -0.167 4.167 6 C -0.010 4.010 7 N -0.163 5.163 8 C -0.484 4.484 9 H 0.098 0.902 10 C -0.127 4.127 11 N -0.465 5.465 12 Si 0.731 3.269 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.213 1.213 16 C 0.318 3.682 17 O -0.425 6.425 18 C -0.136 4.136 19 C -0.179 4.179 20 C -0.130 4.130 21 C -0.161 4.161 22 C -0.126 4.126 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.751 -5.615 -5.938 13.505 hybrid contribution 0.455 -0.112 0.532 0.709 sum -10.296 -5.727 -5.406 12.963 Atomic orbital electron populations 1.23198 0.77090 1.03235 1.02387 1.86546 1.22935 1.34194 1.84420 1.24068 0.92360 0.80972 0.71652 1.90643 1.67346 1.36268 1.45403 1.21980 0.85833 1.02920 1.06000 1.21403 0.84964 0.91447 1.03158 1.43142 1.02219 1.65644 1.05256 1.18904 1.18774 1.14624 0.96103 0.90202 1.25233 0.98949 0.92605 0.95962 1.69951 1.29369 1.04507 1.42693 0.86307 0.82547 0.78837 0.79253 1.19320 1.20456 1.21289 1.17776 0.87207 0.80923 0.82325 1.90639 1.13512 1.52595 1.85743 1.22253 0.97846 0.97213 0.96262 1.23548 0.99952 0.99449 0.94941 1.21270 0.98875 0.95376 0.97475 1.22424 1.01416 0.96149 0.96133 1.21312 0.99128 0.96906 0.95221 0.92104 0.88495 0.92059 0.88099 0.87237 0.90477 0.91032 0.92362 0.85787 0.91473 0.91041 0.91278 0.91208 0.90577 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.02 10.57 -39.25 -0.41 -5.43 16 3 C 0.47 7.41 7.96 36.01 0.29 7.70 16 4 O -0.51 -9.16 15.73 -18.74 -0.29 -9.45 16 5 C -0.13 -2.14 6.10 -27.88 -0.17 -2.31 16 6 C 0.11 2.34 4.64 -4.04 -0.02 2.32 16 7 N -0.44 -10.98 2.48 -116.21 -0.29 -11.27 16 8 C -0.36 -9.74 9.02 -15.02 -0.14 -9.88 16 9 H 0.08 2.07 7.97 -52.49 -0.42 1.65 16 10 C 0.08 2.36 4.12 -17.45 -0.07 2.29 16 11 N -0.83 -24.55 12.79 55.50 0.71 -23.84 16 12 Si 0.90 21.94 29.64 -169.99 -5.04 16.90 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.53 13.60 6.71 -12.74 -0.09 13.51 16 17 O -0.55 -16.37 15.69 5.22 0.08 -16.29 16 18 C -0.13 -2.72 4.49 -102.77 -0.46 -3.18 16 19 C -0.16 -2.77 10.71 -35.98 -0.39 -3.15 16 20 C -0.09 -1.27 6.80 -26.86 -0.18 -1.45 16 21 C -0.12 -1.73 7.16 -25.08 -0.18 -1.91 16 22 C -0.09 -1.57 6.38 -26.85 -0.17 -1.74 16 23 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 29 H 0.07 1.40 4.49 -51.93 -0.23 1.17 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.34 6.34 -51.93 -0.33 1.01 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -33.80 317.48 -6.15 -39.95 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.18 Total: 1.03 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.51 Total: 3.62 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.42 Total: -35.11 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.63 Total: -31.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.04 Total: 16.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.80 -6.15 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.983 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds