Wall clock time and date at job start Mon Mar 30 2020 00:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99905 * 2 1 4 4 O 1.20819 * 120.00030 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99748 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47005 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47182 * 180.02562 * 6 5 3 8 8 C 1.36821 * 119.99712 * 275.47797 * 7 6 5 9 9 H 1.07995 * 119.99908 * 46.14907 * 8 7 6 10 10 C 1.39073 * 119.99749 * 226.14696 * 8 7 6 11 11 N 1.31355 * 120.00123 * 27.35253 * 10 8 7 12 12 Si 1.86794 * 120.00255 * 207.35339 * 10 8 7 13 13 H 1.48501 * 109.46973 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47049 * 119.99841 * 12 10 8 15 15 H 1.48497 * 109.47491 * 240.00302 * 12 10 8 16 16 C 1.34773 * 119.99733 * 95.47409 * 7 6 5 17 17 O 1.21664 * 119.99880 * 185.70645 * 16 7 6 18 18 C 1.46947 * 120.00705 * 5.71172 * 16 7 6 19 19 C 1.32752 * 124.63371 * 246.76557 * 18 16 7 20 20 C 1.51111 * 110.73672 * 179.73394 * 19 18 16 21 21 C 1.54570 * 104.84748 * 16.86522 * 20 19 18 22 22 C 1.51116 * 124.63061 * 66.93274 * 18 16 7 23 23 H 1.09005 * 109.46838 * 60.00202 * 1 2 3 24 24 H 1.09006 * 109.47139 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47513 * 300.00279 * 1 2 3 26 26 H 1.09006 * 109.47070 * 60.00306 * 5 3 2 27 27 H 1.08997 * 109.47470 * 300.00430 * 5 3 2 28 28 H 1.08996 * 109.47162 * 60.00216 * 6 5 3 29 29 H 1.09000 * 109.47106 * 299.99936 * 6 5 3 30 30 H 0.96993 * 120.00479 * 184.70692 * 11 10 8 31 31 H 1.07998 * 124.62807 * 359.97438 * 19 18 16 32 32 H 1.08997 * 110.36515 * 135.71595 * 20 19 18 33 33 H 1.09004 * 110.35729 * 258.02522 * 20 19 18 34 34 H 1.08999 * 110.97565 * 93.05726 * 21 20 19 35 35 H 1.09005 * 110.97971 * 216.84151 * 21 20 19 36 36 H 1.08996 * 110.51909 * 44.69158 * 22 18 16 37 37 H 1.08996 * 110.24623 * 282.45545 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0011 8 6 6.1522 2.7411 1.1805 9 1 5.9006 1.9797 1.9038 10 6 7.1768 3.6428 1.4478 11 7 7.1588 4.8378 0.9028 12 14 8.5784 3.1546 2.5820 13 1 8.3657 1.7655 3.0621 14 1 9.8635 3.2306 1.8418 15 1 8.6206 4.0791 3.7433 16 6 6.1301 2.9656 -1.1608 17 8 7.3461 2.9251 -1.1735 18 6 5.3890 3.1747 -2.4123 19 6 5.3456 2.3084 -3.4173 20 6 4.4884 2.8379 -4.5435 21 6 4.3550 4.3518 -4.2616 22 6 4.5749 4.4069 -2.7326 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.9564 0.7805 -0.8892 27 1 3.9557 0.7808 0.8907 28 1 3.6101 3.2359 0.8910 29 1 3.6107 3.2363 -0.8889 30 1 7.9062 5.4419 1.0339 31 1 5.8506 1.3538 -3.4268 32 1 4.9782 2.6723 -5.5030 33 1 3.5080 2.3616 -4.5299 34 1 5.1254 4.9159 -4.7873 35 1 3.3607 4.7119 -4.5262 36 1 5.1236 5.3086 -2.4607 37 1 3.6188 4.3735 -2.2105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:38 Heat of formation + Delta-G solvation = -121.052134 kcal Electronic energy + Delta-G solvation = -20946.652098 eV Core-core repulsion = 17688.866109 eV Total energy + Delta-G solvation = -3257.785989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54813 -40.66848 -38.52258 -37.62992 -36.43951 -34.30859 -31.95189 -30.29657 -29.31990 -28.59301 -26.85717 -25.11505 -22.67470 -21.78860 -21.59123 -19.76048 -18.86987 -18.23679 -17.67135 -17.60167 -17.09183 -16.93515 -16.42698 -16.02545 -15.27920 -15.04722 -14.93593 -14.28843 -13.91604 -13.73775 -13.63178 -13.46013 -13.13056 -13.01950 -12.79089 -12.76393 -12.53949 -12.48139 -12.15478 -12.07428 -11.98825 -11.83611 -11.73639 -11.58060 -10.77723 -10.33310 -9.67397 -9.35029 -8.34520 -6.08244 0.98446 1.16258 1.35634 1.44011 1.52189 1.70622 2.18220 2.41386 3.07939 3.19899 3.73570 3.81652 3.87719 3.99529 4.16476 4.20372 4.33542 4.37395 4.37961 4.44859 4.52477 4.73110 4.75911 4.86937 4.87998 4.96423 5.02443 5.09803 5.19954 5.36340 5.37936 5.45490 5.55860 5.79791 6.13046 6.72295 6.93727 7.08498 7.52806 8.18835 8.73350 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.007874 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.795508 B = 3554.977145 C = 5083.291302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.478 3.522 4 O -0.533 6.533 5 C -0.118 4.118 6 C 0.119 3.881 7 N -0.452 5.452 8 C -0.373 4.373 9 H 0.088 0.912 10 C 0.032 3.968 11 N -0.874 5.874 12 Si 0.963 3.037 13 H -0.253 1.253 14 H -0.294 1.294 15 H -0.273 1.273 16 C 0.521 3.479 17 O -0.605 6.605 18 C -0.182 4.182 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.114 4.114 22 C -0.084 4.084 23 H 0.065 0.935 24 H 0.133 0.867 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.263 0.737 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.105 -7.881 -7.413 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.322 3.678 4 O -0.423 6.423 5 C -0.157 4.157 6 C -0.005 4.005 7 N -0.172 5.172 8 C -0.499 4.499 9 H 0.106 0.894 10 C -0.174 4.174 11 N -0.508 5.508 12 Si 0.787 3.213 13 H -0.176 1.176 14 H -0.221 1.221 15 H -0.198 1.198 16 C 0.311 3.689 17 O -0.489 6.489 18 C -0.185 4.185 19 C -0.144 4.144 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.122 4.122 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.708 -7.411 -7.338 16.439 hybrid contribution 0.931 0.325 0.929 1.355 sum -11.777 -7.085 -6.409 15.165 Atomic orbital electron populations 1.23578 0.74655 1.05747 1.02641 1.86514 1.25185 1.32517 1.83751 1.23638 0.91740 0.81305 0.71140 1.90642 1.67725 1.37207 1.46708 1.21699 0.87122 1.00091 1.06796 1.21376 0.82281 0.94106 1.02723 1.43346 1.03988 1.65120 1.04756 1.19297 1.19231 1.14382 0.97005 0.89408 1.26113 1.01179 0.92551 0.97606 1.70038 1.29891 1.05603 1.45306 0.85394 0.78676 0.79549 0.77639 1.17597 1.22122 1.19824 1.18573 0.86927 0.79378 0.84025 1.90572 1.16141 1.55142 1.87020 1.22036 1.01030 1.00156 0.95278 1.24029 0.97410 0.98442 0.94522 1.21376 0.99554 0.94693 0.96759 1.22447 1.03306 0.96852 0.92528 1.21282 0.98092 0.94320 0.98500 0.91651 0.84896 0.92096 0.86864 0.86964 0.92159 0.90209 0.92779 0.85410 0.88704 0.88226 0.90986 0.88182 0.93722 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -9.09 10.57 -51.38 -0.54 -9.63 16 3 C 0.48 14.42 7.96 71.24 0.57 14.99 16 4 O -0.53 -18.56 15.73 21.98 0.35 -18.21 16 5 C -0.12 -3.85 6.10 29.85 0.18 -3.67 16 6 C 0.12 4.90 4.64 86.38 0.40 5.30 16 7 N -0.45 -23.13 2.48 -639.80 -1.59 -24.72 16 8 C -0.37 -20.81 9.02 84.12 0.76 -20.05 16 9 H 0.09 4.61 7.97 -2.91 -0.02 4.59 16 10 C 0.03 1.88 4.12 84.96 0.35 2.23 16 11 N -0.87 -53.86 12.79 21.68 0.28 -53.59 16 12 Si 0.96 46.23 29.64 68.60 2.03 48.26 16 13 H -0.25 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.52 27.60 6.71 86.53 0.58 28.18 16 17 O -0.60 -37.89 15.69 -4.23 -0.07 -37.96 16 18 C -0.18 -7.46 4.49 -18.62 -0.08 -7.55 16 19 C -0.12 -4.06 10.71 24.64 0.26 -3.79 16 20 C -0.09 -1.99 6.80 30.51 0.21 -1.78 16 21 C -0.11 -2.82 7.16 31.66 0.23 -2.60 16 22 C -0.08 -2.98 6.38 30.51 0.19 -2.79 16 23 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 24 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 26 H 0.11 3.40 8.14 -2.38 -0.02 3.39 16 27 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 29 H 0.08 3.14 4.49 -2.39 -0.01 3.13 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 2.68 6.34 -2.39 -0.02 2.67 16 Total: -1.00 -77.17 317.48 6.37 -70.81 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.06 Total: 14.91 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 4.85 Total: 10.13 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.31 Total: -78.31 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -0.26 Total: -65.80 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.17 6.37 -70.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.247 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds