Wall clock time and date at job start Mon Mar 30 2020 00:47:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34231 * 116.99569 * 2 1
4 4 O 1.20820 * 120.00288 * 0.02562 * 3 2 1
5 5 C 1.50707 * 120.00022 * 179.97438 * 3 2 1
6 6 C 1.52992 * 109.47252 * 179.97438 * 5 3 2
7 7 N 1.46500 * 109.47319 * 179.97438 * 6 5 3
8 8 C 1.37104 * 119.99533 * 89.99947 * 7 6 5
9 9 H 1.07996 * 120.00520 * 355.85131 * 8 7 6
10 10 C 1.38956 * 119.99589 * 175.85198 * 8 7 6
11 11 N 1.31410 * 120.00010 * 114.57896 * 10 8 7
12 12 Si 1.86799 * 119.99832 * 294.57145 * 10 8 7
13 13 H 1.48498 * 109.46888 * 90.00515 * 12 10 8
14 14 H 1.48507 * 109.47064 * 210.00064 * 12 10 8
15 15 H 1.48500 * 109.47150 * 330.00335 * 12 10 8
16 16 C 1.34778 * 120.00260 * 270.00303 * 7 6 5
17 17 O 1.21293 * 119.99777 * 184.04409 * 16 7 6
18 18 C 1.50698 * 119.99941 * 4.03952 * 16 7 6
19 19 C 1.54889 * 129.09221 * 297.45383 * 18 16 7
20 20 C 1.57165 * 77.91492 * 180.16546 * 19 18 16
21 21 C 1.54404 * 83.73185 * 42.47612 * 20 19 18
22 22 C 1.54887 * 129.08803 * 57.57789 * 18 16 7
23 23 H 1.08996 * 109.47209 * 60.00759 * 1 2 3
24 24 H 1.09007 * 109.46764 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.47170 * 300.00013 * 1 2 3
26 26 H 1.09000 * 109.46885 * 59.99731 * 5 3 2
27 27 H 1.08998 * 109.46884 * 300.00185 * 5 3 2
28 28 H 1.09000 * 109.47274 * 60.00117 * 6 5 3
29 29 H 1.08998 * 109.47447 * 299.99987 * 6 5 3
30 30 H 0.96996 * 120.00099 * 173.81590 * 11 10 8
31 31 H 1.09002 * 114.97619 * 291.96255 * 19 18 16
32 32 H 1.09005 * 114.97683 * 67.12820 * 19 18 16
33 33 H 1.09006 * 129.24511 * 179.20246 * 20 19 18
34 34 H 1.09002 * 114.93019 * 205.06137 * 21 20 19
35 35 H 1.08997 * 114.93592 * 70.03348 * 21 20 19
36 36 H 1.08997 * 114.98255 * 292.87096 * 22 18 16
37 37 H 1.09005 * 114.97535 * 68.04004 * 22 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1961 0.0000
4 8 1.4032 2.2093 0.0005
5 6 3.5663 1.2750 0.0006
6 6 4.0000 2.7422 -0.0002
7 7 5.4630 2.8190 0.0010
8 6 6.1485 2.8540 -1.1859
9 1 5.6157 2.7575 -2.1203
10 6 7.5288 3.0136 -1.1864
11 7 8.3022 2.0443 -1.6214
12 14 8.2851 4.6062 -0.5690
13 1 8.5475 4.4971 0.8885
14 1 9.5619 4.8578 -1.2843
15 1 7.3471 5.7297 -0.8204
16 6 6.1350 2.8552 1.1687
17 8 7.3401 2.9926 1.1708
18 6 5.3891 2.7250 2.4717
19 6 4.3074 3.6550 3.0750
20 6 4.4323 2.5390 4.1745
21 6 5.9465 2.6863 3.9112
22 6 4.4654 1.5808 2.9580
23 1 -0.3633 0.5137 -0.8900
24 1 -0.3633 -1.0278 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 3.9564 0.7807 -0.8891
27 1 3.9557 0.7811 0.8908
28 1 3.6099 3.2369 0.8893
29 1 3.6106 3.2358 -0.8906
30 1 9.2578 2.1873 -1.7063
31 1 4.6647 4.6381 3.3817
32 1 3.3645 3.6794 2.5286
33 1 3.9069 2.4455 5.1251
34 1 6.5423 1.8052 4.1496
35 1 6.3847 3.6216 4.2595
36 1 3.5324 1.4755 2.4044
37 1 4.9696 0.6349 3.1560
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871346502.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:47:35
Heat of formation + Delta-G solvation = 12.883705 kcal
Electronic energy + Delta-G solvation = -21472.636350 eV
Core-core repulsion = 18220.658255 eV
Total energy + Delta-G solvation = -3251.978095 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.130 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.57547 -40.28222 -37.96566 -36.46891 -34.66308 -32.55847 -30.62943 -27.68530
-26.24381 -25.48323 -25.24482 -24.24970 -22.82632 -20.61844 -19.67397 -18.38389
-17.56577 -17.07947 -16.48997 -16.42393 -15.55397 -14.71686 -14.57937 -14.12468
-13.68101 -13.66913 -13.49302 -13.35330 -12.89603 -12.51628 -12.29413 -12.13238
-11.74479 -11.20569 -11.09553 -11.04448 -10.90738 -10.77666 -10.71754 -10.41034
-10.35238 -10.12686 -9.89835 -9.81837 -9.72191 -8.42220 -8.15155 -7.62619
-6.54572 -3.48169 2.35141 2.79868 3.47123 3.72694 3.82737 3.94278
4.34657 4.56826 4.70120 4.80310 4.87185 4.89177 4.97890 5.05944
5.09155 5.12479 5.20402 5.39383 5.43054 5.48982 5.60419 5.78229
5.89222 5.95443 5.97011 6.06677 6.23805 6.25173 6.26545 6.31710
6.42733 6.57675 6.77196 7.58969 7.84900 7.90332 8.76926 9.10587
9.51640 10.12497 10.41263
Molecular weight = 267.13amu
Principal moments of inertia in cm(-1)
A = 0.018092 B = 0.007900 C = 0.006100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1547.279861 B = 3543.606674 C = 4589.031729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.362 6.362
3 C 0.467 3.533
4 O -0.511 6.511
5 C -0.139 4.139
6 C 0.120 3.880
7 N -0.411 5.411
8 C -0.461 4.461
9 H 0.102 0.898
10 C 0.171 3.829
11 N -0.764 5.764
12 Si 0.879 3.121
13 H -0.240 1.240
14 H -0.316 1.316
15 H -0.289 1.289
16 C 0.441 3.559
17 O -0.552 6.552
18 C -0.121 4.121
19 C -0.123 4.123
20 C -0.152 4.152
21 C -0.099 4.099
22 C -0.124 4.124
23 H 0.061 0.939
24 H 0.098 0.902
25 H 0.061 0.939
26 H 0.116 0.884
27 H 0.112 0.888
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.274 0.726
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.137 0.863
34 H 0.071 0.929
35 H 0.070 0.930
36 H 0.073 0.927
37 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.395 -3.481 6.954 14.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.278 6.278
3 C 0.310 3.690
4 O -0.399 6.399
5 C -0.178 4.178
6 C -0.005 4.005
7 N -0.126 5.126
8 C -0.579 4.579
9 H 0.119 0.881
10 C -0.053 4.053
11 N -0.390 5.390
12 Si 0.708 3.292
13 H -0.166 1.166
14 H -0.246 1.246
15 H -0.215 1.215
16 C 0.234 3.766
17 O -0.439 6.439
18 C -0.125 4.125
19 C -0.160 4.160
20 C -0.170 4.170
21 C -0.137 4.137
22 C -0.161 4.161
23 H 0.080 0.920
24 H 0.116 0.884
25 H 0.079 0.921
26 H 0.134 0.866
27 H 0.130 0.870
28 H 0.096 0.904
29 H 0.099 0.901
30 H 0.084 0.916
31 H 0.090 0.910
32 H 0.094 0.906
33 H 0.154 0.846
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.092 0.908
37 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -11.907 -3.301 6.915 14.159
hybrid contribution 0.011 0.711 0.079 0.716
sum -11.896 -2.590 6.994 14.040
Atomic orbital electron populations
1.23217 0.76980 1.03352 1.02389 1.86556 1.23000 1.33995 1.84279
1.24046 0.92288 0.81050 0.71634 1.90641 1.67390 1.36265 1.45628
1.22206 0.85947 1.02410 1.07217 1.21292 0.83045 0.92592 1.03585
1.43468 1.03205 1.60614 1.05337 1.18483 0.89725 1.65323 0.84356
0.88088 1.25022 0.95084 0.96778 0.88454 1.70567 1.06175 1.29939
1.32326 0.87564 0.75875 0.84176 0.81603 1.16590 1.24635 1.21525
1.18083 0.87246 0.89259 0.81993 1.90507 1.13763 1.55782 1.83853
1.23927 0.96229 0.97461 0.94876 1.24703 0.98092 0.97159 0.96078
1.25263 0.97751 0.97136 0.96832 1.23690 0.94584 1.01579 0.93844
1.24339 0.98850 0.97089 0.95846 0.92024 0.88394 0.92072 0.86594
0.87008 0.90395 0.90112 0.91580 0.90978 0.90566 0.84565 0.91067
0.91123 0.90843 0.90948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 10.56 101.05 1.07 1.41 16
2 O -0.36 -4.94 10.57 -39.26 -0.41 -5.35 16
3 C 0.47 7.25 7.90 36.01 0.28 7.53 16
4 O -0.51 -8.83 15.73 -18.75 -0.29 -9.13 16
5 C -0.14 -2.33 5.31 -27.88 -0.15 -2.47 16
6 C 0.12 2.33 4.22 -4.05 -0.02 2.32 16
7 N -0.41 -9.96 2.62 -114.81 -0.30 -10.26 16
8 C -0.46 -12.67 9.64 -14.93 -0.14 -12.81 16
9 H 0.10 2.76 8.06 -52.49 -0.42 2.34 16
10 C 0.17 4.89 3.93 -17.47 -0.07 4.82 16
11 N -0.76 -22.04 13.95 55.50 0.77 -21.26 16
12 Si 0.88 23.73 26.44 -169.99 -4.50 19.24 16
13 H -0.24 -6.84 5.77 56.52 0.33 -6.51 16
14 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16
15 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16
16 C 0.44 10.95 7.34 -10.99 -0.08 10.87 16
17 O -0.55 -15.83 10.51 5.55 0.06 -15.77 16
18 C -0.12 -2.34 2.43 -172.28 -0.42 -2.76 16
19 C -0.12 -1.95 7.25 -24.72 -0.18 -2.13 16
20 C -0.15 -2.08 8.58 -105.97 -0.91 -2.99 16
21 C -0.10 -1.66 7.78 -26.72 -0.21 -1.87 16
22 C -0.12 -1.92 5.96 -25.99 -0.15 -2.07 16
23 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16
24 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16
25 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16
26 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16
27 H 0.11 1.81 5.10 -51.93 -0.26 1.55 16
28 H 0.08 1.42 4.28 -51.93 -0.22 1.19 16
29 H 0.08 1.57 8.00 -51.93 -0.42 1.16 16
30 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16
31 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16
32 H 0.08 1.16 6.19 -51.93 -0.32 0.84 16
33 H 0.14 1.45 8.14 -51.93 -0.42 1.03 16
34 H 0.07 1.18 7.94 -51.93 -0.41 0.76 16
35 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16
36 H 0.07 1.08 5.45 -51.93 -0.28 0.79 16
37 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16
LS Contribution 298.47 15.07 4.50 4.50
Total: -1.00 -32.89 298.47 -6.05 -38.94
By element:
Atomic # 1 Polarization: 4.15 SS G_CDS: -4.90 Total: -0.75 kcal
Atomic # 6 Polarization: 0.82 SS G_CDS: -0.98 Total: -0.15 kcal
Atomic # 7 Polarization: -32.00 SS G_CDS: 0.47 Total: -31.53 kcal
Atomic # 8 Polarization: -29.60 SS G_CDS: -0.65 Total: -30.25 kcal
Atomic # 14 Polarization: 23.73 SS G_CDS: -4.50 Total: 19.24 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -32.89 -6.05 -38.94 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871346502.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.828 kcal
(2) G-P(sol) polarization free energy of solvation -32.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds