Wall clock time and date at job start Mon Mar 30 2020 00:47:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34231 * 116.99569 * 2 1
4 4 O 1.20820 * 120.00288 * 0.02562 * 3 2 1
5 5 C 1.50707 * 120.00022 * 179.97438 * 3 2 1
6 6 C 1.52992 * 109.47252 * 179.97438 * 5 3 2
7 7 N 1.46500 * 109.47319 * 179.97438 * 6 5 3
8 8 C 1.37104 * 119.99533 * 89.99947 * 7 6 5
9 9 H 1.07996 * 120.00520 * 355.85131 * 8 7 6
10 10 C 1.38956 * 119.99589 * 175.85198 * 8 7 6
11 11 N 1.31410 * 120.00010 * 114.57896 * 10 8 7
12 12 Si 1.86799 * 119.99832 * 294.57145 * 10 8 7
13 13 H 1.48498 * 109.46888 * 90.00515 * 12 10 8
14 14 H 1.48507 * 109.47064 * 210.00064 * 12 10 8
15 15 H 1.48500 * 109.47150 * 330.00335 * 12 10 8
16 16 C 1.34778 * 120.00260 * 270.00303 * 7 6 5
17 17 O 1.21293 * 119.99777 * 184.04409 * 16 7 6
18 18 C 1.50698 * 119.99941 * 4.03952 * 16 7 6
19 19 C 1.54889 * 129.09221 * 297.45383 * 18 16 7
20 20 C 1.57165 * 77.91492 * 180.16546 * 19 18 16
21 21 C 1.54404 * 83.73185 * 42.47612 * 20 19 18
22 22 C 1.54887 * 129.08803 * 57.57789 * 18 16 7
23 23 H 1.08996 * 109.47209 * 60.00759 * 1 2 3
24 24 H 1.09007 * 109.46764 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.47170 * 300.00013 * 1 2 3
26 26 H 1.09000 * 109.46885 * 59.99731 * 5 3 2
27 27 H 1.08998 * 109.46884 * 300.00185 * 5 3 2
28 28 H 1.09000 * 109.47274 * 60.00117 * 6 5 3
29 29 H 1.08998 * 109.47447 * 299.99987 * 6 5 3
30 30 H 0.96996 * 120.00099 * 173.81590 * 11 10 8
31 31 H 1.09002 * 114.97619 * 291.96255 * 19 18 16
32 32 H 1.09005 * 114.97683 * 67.12820 * 19 18 16
33 33 H 1.09006 * 129.24511 * 179.20246 * 20 19 18
34 34 H 1.09002 * 114.93019 * 205.06137 * 21 20 19
35 35 H 1.08997 * 114.93592 * 70.03348 * 21 20 19
36 36 H 1.08997 * 114.98255 * 292.87096 * 22 18 16
37 37 H 1.09005 * 114.97535 * 68.04004 * 22 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1961 0.0000
4 8 1.4032 2.2093 0.0005
5 6 3.5663 1.2750 0.0006
6 6 4.0000 2.7422 -0.0002
7 7 5.4630 2.8190 0.0010
8 6 6.1485 2.8540 -1.1859
9 1 5.6157 2.7575 -2.1203
10 6 7.5288 3.0136 -1.1864
11 7 8.3022 2.0443 -1.6214
12 14 8.2851 4.6062 -0.5690
13 1 8.5475 4.4971 0.8885
14 1 9.5619 4.8578 -1.2843
15 1 7.3471 5.7297 -0.8204
16 6 6.1350 2.8552 1.1687
17 8 7.3401 2.9926 1.1708
18 6 5.3891 2.7250 2.4717
19 6 4.3074 3.6550 3.0750
20 6 4.4323 2.5390 4.1745
21 6 5.9465 2.6863 3.9112
22 6 4.4654 1.5808 2.9580
23 1 -0.3633 0.5137 -0.8900
24 1 -0.3633 -1.0278 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 3.9564 0.7807 -0.8891
27 1 3.9557 0.7811 0.8908
28 1 3.6099 3.2369 0.8893
29 1 3.6106 3.2358 -0.8906
30 1 9.2578 2.1873 -1.7063
31 1 4.6647 4.6381 3.3817
32 1 3.3645 3.6794 2.5286
33 1 3.9069 2.4455 5.1251
34 1 6.5423 1.8052 4.1496
35 1 6.3847 3.6216 4.2595
36 1 3.5324 1.4755 2.4044
37 1 4.9696 0.6349 3.1560
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000871346502.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:47:34
Heat of formation + Delta-G solvation = -7.942707 kcal
Electronic energy + Delta-G solvation = -21473.539451 eV
Core-core repulsion = 18220.658255 eV
Total energy + Delta-G solvation = -3252.881196 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.130 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-42.91284 -41.47323 -39.81117 -37.67430 -36.47945 -34.64588 -32.22356 -28.72198
-27.97940 -26.73623 -26.55175 -25.78279 -24.39646 -21.93054 -21.34000 -19.96970
-18.92494 -18.64444 -17.72987 -17.59861 -17.09716 -16.73774 -16.24448 -15.56917
-15.29809 -15.07039 -14.99561 -14.75771 -14.40910 -14.32160 -13.78278 -13.54515
-12.98074 -12.85030 -12.66413 -12.56493 -12.34095 -12.28717 -12.10148 -11.92286
-11.80955 -11.70026 -11.58348 -11.10136 -11.07775 -10.44234 -10.22381 -9.69527
-8.71924 -5.61923 1.12446 1.33896 1.53354 1.61395 1.69339 2.02795
2.46718 2.71151 3.02102 3.35575 3.45867 3.56024 3.71483 3.72813
3.85091 3.94888 4.02533 4.21401 4.35314 4.37869 4.41840 4.60252
4.67776 4.68622 4.75063 4.75559 4.85946 4.97417 5.00671 5.04530
5.10152 5.34602 5.47838 5.54786 5.82293 6.68410 6.72495 7.08420
7.49148 8.15511 8.27198
Molecular weight = 267.13amu
Principal moments of inertia in cm(-1)
A = 0.018092 B = 0.007900 C = 0.006100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1547.279861 B = 3543.606674 C = 4589.031729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.364 6.364
3 C 0.479 3.521
4 O -0.529 6.529
5 C -0.131 4.131
6 C 0.121 3.879
7 N -0.423 5.423
8 C -0.478 4.478
9 H 0.093 0.907
10 C 0.146 3.854
11 N -0.791 5.791
12 Si 0.916 3.084
13 H -0.266 1.266
14 H -0.308 1.308
15 H -0.290 1.290
16 C 0.436 3.564
17 O -0.599 6.599
18 C -0.173 4.173
19 C -0.118 4.118
20 C -0.096 4.096
21 C -0.108 4.108
22 C -0.114 4.114
23 H 0.061 0.939
24 H 0.132 0.868
25 H 0.068 0.932
26 H 0.106 0.894
27 H 0.120 0.880
28 H 0.094 0.906
29 H 0.074 0.926
30 H 0.278 0.722
31 H 0.072 0.928
32 H 0.085 0.915
33 H 0.186 0.814
34 H 0.068 0.932
35 H 0.066 0.934
36 H 0.085 0.915
37 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.017 -4.186 9.043 18.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.280 6.280
3 C 0.323 3.677
4 O -0.419 6.419
5 C -0.169 4.169
6 C -0.003 4.003
7 N -0.138 5.138
8 C -0.597 4.597
9 H 0.110 0.890
10 C -0.075 4.075
11 N -0.419 5.419
12 Si 0.746 3.254
13 H -0.194 1.194
14 H -0.238 1.238
15 H -0.217 1.217
16 C 0.230 3.770
17 O -0.488 6.488
18 C -0.176 4.176
19 C -0.155 4.155
20 C -0.113 4.113
21 C -0.146 4.146
22 C -0.151 4.151
23 H 0.080 0.920
24 H 0.150 0.850
25 H 0.086 0.914
26 H 0.124 0.876
27 H 0.138 0.862
28 H 0.112 0.888
29 H 0.092 0.908
30 H 0.089 0.911
31 H 0.090 0.910
32 H 0.103 0.897
33 H 0.203 0.797
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.103 0.897
37 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -14.566 -4.017 8.985 17.579
hybrid contribution 0.760 0.881 -0.556 1.290
sum -13.806 -3.136 8.429 16.477
Atomic orbital electron populations
1.23597 0.74507 1.05787 1.02770 1.86525 1.25296 1.32507 1.83656
1.23526 0.91488 0.81409 0.71282 1.90641 1.67616 1.36982 1.46663
1.21937 0.87475 1.00271 1.07232 1.21400 0.80288 0.94621 1.03994
1.43593 1.05127 1.60703 1.04394 1.18529 0.89818 1.65798 0.85513
0.88979 1.25433 0.95838 0.97767 0.88501 1.70585 1.06604 1.30547
1.34182 0.86909 0.75782 0.82961 0.79725 1.19352 1.23767 1.21696
1.19093 0.87215 0.86821 0.83858 1.90440 1.16138 1.57239 1.85019
1.23993 0.98628 1.01899 0.93099 1.24730 0.96764 0.97463 0.96592
1.25265 0.94686 0.94068 0.97280 1.23816 0.97288 1.01392 0.92084
1.24325 0.97979 0.96389 0.96432 0.92031 0.85015 0.91370 0.87564
0.86208 0.88833 0.90789 0.91133 0.90961 0.89662 0.79736 0.91313
0.91586 0.89711 0.90527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.44 10.56 113.37 1.20 1.63 16
2 O -0.36 -8.93 10.57 -51.43 -0.54 -9.47 16
3 C 0.48 13.88 7.90 71.24 0.56 14.44 16
4 O -0.53 -17.16 15.73 21.98 0.35 -16.81 16
5 C -0.13 -4.23 5.31 29.85 0.16 -4.07 16
6 C 0.12 4.63 4.22 86.38 0.36 5.00 16
7 N -0.42 -20.79 2.62 -635.55 -1.67 -22.45 16
8 C -0.48 -26.99 9.64 84.04 0.81 -26.18 16
9 H 0.09 5.23 8.06 -2.91 -0.02 5.20 16
10 C 0.15 8.61 3.93 84.93 0.33 8.95 16
11 N -0.79 -46.94 13.95 21.66 0.30 -46.64 16
12 Si 0.92 50.37 26.44 68.60 1.81 52.19 16
13 H -0.27 -15.67 5.77 99.48 0.57 -15.09 16
14 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16
15 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16
16 C 0.44 21.90 7.34 87.66 0.64 22.55 16
17 O -0.60 -35.31 10.51 -3.07 -0.03 -35.34 16
18 C -0.17 -6.41 2.43 -63.69 -0.15 -6.57 16
19 C -0.12 -3.38 7.25 31.90 0.23 -3.15 16
20 C -0.10 -2.15 8.58 -20.74 -0.18 -2.33 16
21 C -0.11 -3.38 7.78 30.60 0.24 -3.14 16
22 C -0.11 -3.13 5.96 31.08 0.19 -2.95 16
23 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16
24 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16
25 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16
26 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16
27 H 0.12 3.67 5.10 -2.39 -0.01 3.66 16
28 H 0.09 3.26 4.28 -2.39 -0.01 3.25 16
29 H 0.07 2.90 8.00 -2.39 -0.02 2.88 16
30 H 0.28 15.46 8.32 -92.71 -0.77 14.68 16
31 H 0.07 2.07 7.91 -2.39 -0.02 2.05 16
32 H 0.09 2.30 6.19 -2.38 -0.01 2.28 16
33 H 0.19 2.56 8.14 -2.38 -0.02 2.54 16
34 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16
35 H 0.07 2.10 7.91 -2.39 -0.02 2.08 16
36 H 0.08 2.16 5.45 -2.39 -0.01 2.14 16
37 H 0.08 2.07 7.93 -2.38 -0.02 2.05 16
Total: -1.00 -73.62 298.47 5.56 -68.06
By element:
Atomic # 1 Polarization: 5.35 SS G_CDS: 0.95 Total: 6.30 kcal
Atomic # 6 Polarization: -0.22 SS G_CDS: 4.39 Total: 4.17 kcal
Atomic # 7 Polarization: -67.73 SS G_CDS: -1.36 Total: -69.09 kcal
Atomic # 8 Polarization: -61.39 SS G_CDS: -0.23 Total: -61.62 kcal
Atomic # 14 Polarization: 50.37 SS G_CDS: 1.81 Total: 52.19 kcal
Total: -73.62 5.56 -68.06 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871346502.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.115 kcal
(2) G-P(sol) polarization free energy of solvation -73.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds