Wall clock time and date at job start Mon Mar 30 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99569 * 2 1 4 4 O 1.20820 * 120.00288 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47252 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47319 * 179.97438 * 6 5 3 8 8 C 1.37104 * 119.99533 * 89.99947 * 7 6 5 9 9 H 1.07996 * 120.00520 * 355.85131 * 8 7 6 10 10 C 1.38956 * 119.99589 * 175.85198 * 8 7 6 11 11 N 1.31410 * 120.00010 * 114.57896 * 10 8 7 12 12 Si 1.86799 * 119.99832 * 294.57145 * 10 8 7 13 13 H 1.48498 * 109.46888 * 90.00515 * 12 10 8 14 14 H 1.48507 * 109.47064 * 210.00064 * 12 10 8 15 15 H 1.48500 * 109.47150 * 330.00335 * 12 10 8 16 16 C 1.34778 * 120.00260 * 270.00303 * 7 6 5 17 17 O 1.21293 * 119.99777 * 184.04409 * 16 7 6 18 18 C 1.50698 * 119.99941 * 4.03952 * 16 7 6 19 19 C 1.54889 * 129.09221 * 297.45383 * 18 16 7 20 20 C 1.57165 * 77.91492 * 180.16546 * 19 18 16 21 21 C 1.54404 * 83.73185 * 42.47612 * 20 19 18 22 22 C 1.54887 * 129.08803 * 57.57789 * 18 16 7 23 23 H 1.08996 * 109.47209 * 60.00759 * 1 2 3 24 24 H 1.09007 * 109.46764 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47170 * 300.00013 * 1 2 3 26 26 H 1.09000 * 109.46885 * 59.99731 * 5 3 2 27 27 H 1.08998 * 109.46884 * 300.00185 * 5 3 2 28 28 H 1.09000 * 109.47274 * 60.00117 * 6 5 3 29 29 H 1.08998 * 109.47447 * 299.99987 * 6 5 3 30 30 H 0.96996 * 120.00099 * 173.81590 * 11 10 8 31 31 H 1.09002 * 114.97619 * 291.96255 * 19 18 16 32 32 H 1.09005 * 114.97683 * 67.12820 * 19 18 16 33 33 H 1.09006 * 129.24511 * 179.20246 * 20 19 18 34 34 H 1.09002 * 114.93019 * 205.06137 * 21 20 19 35 35 H 1.08997 * 114.93592 * 70.03348 * 21 20 19 36 36 H 1.08997 * 114.98255 * 292.87096 * 22 18 16 37 37 H 1.09005 * 114.97535 * 68.04004 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8190 0.0010 8 6 6.1485 2.8540 -1.1859 9 1 5.6157 2.7575 -2.1203 10 6 7.5288 3.0136 -1.1864 11 7 8.3022 2.0443 -1.6214 12 14 8.2851 4.6062 -0.5690 13 1 8.5475 4.4971 0.8885 14 1 9.5619 4.8578 -1.2843 15 1 7.3471 5.7297 -0.8204 16 6 6.1350 2.8552 1.1687 17 8 7.3401 2.9926 1.1708 18 6 5.3891 2.7250 2.4717 19 6 4.3074 3.6550 3.0750 20 6 4.4323 2.5390 4.1745 21 6 5.9465 2.6863 3.9112 22 6 4.4654 1.5808 2.9580 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.9564 0.7807 -0.8891 27 1 3.9557 0.7811 0.8908 28 1 3.6099 3.2369 0.8893 29 1 3.6106 3.2358 -0.8906 30 1 9.2578 2.1873 -1.7063 31 1 4.6647 4.6381 3.3817 32 1 3.3645 3.6794 2.5286 33 1 3.9069 2.4455 5.1251 34 1 6.5423 1.8052 4.1496 35 1 6.3847 3.6216 4.2595 36 1 3.5324 1.4755 2.4044 37 1 4.9696 0.6349 3.1560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871346502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:34 Heat of formation + Delta-G solvation = -7.942707 kcal Electronic energy + Delta-G solvation = -21473.539451 eV Core-core repulsion = 18220.658255 eV Total energy + Delta-G solvation = -3252.881196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.91284 -41.47323 -39.81117 -37.67430 -36.47945 -34.64588 -32.22356 -28.72198 -27.97940 -26.73623 -26.55175 -25.78279 -24.39646 -21.93054 -21.34000 -19.96970 -18.92494 -18.64444 -17.72987 -17.59861 -17.09716 -16.73774 -16.24448 -15.56917 -15.29809 -15.07039 -14.99561 -14.75771 -14.40910 -14.32160 -13.78278 -13.54515 -12.98074 -12.85030 -12.66413 -12.56493 -12.34095 -12.28717 -12.10148 -11.92286 -11.80955 -11.70026 -11.58348 -11.10136 -11.07775 -10.44234 -10.22381 -9.69527 -8.71924 -5.61923 1.12446 1.33896 1.53354 1.61395 1.69339 2.02795 2.46718 2.71151 3.02102 3.35575 3.45867 3.56024 3.71483 3.72813 3.85091 3.94888 4.02533 4.21401 4.35314 4.37869 4.41840 4.60252 4.67776 4.68622 4.75063 4.75559 4.85946 4.97417 5.00671 5.04530 5.10152 5.34602 5.47838 5.54786 5.82293 6.68410 6.72495 7.08420 7.49148 8.15511 8.27198 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.007900 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.279861 B = 3543.606674 C = 4589.031729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.479 3.521 4 O -0.529 6.529 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.423 5.423 8 C -0.478 4.478 9 H 0.093 0.907 10 C 0.146 3.854 11 N -0.791 5.791 12 Si 0.916 3.084 13 H -0.266 1.266 14 H -0.308 1.308 15 H -0.290 1.290 16 C 0.436 3.564 17 O -0.599 6.599 18 C -0.173 4.173 19 C -0.118 4.118 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.114 4.114 23 H 0.061 0.939 24 H 0.132 0.868 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.278 0.722 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 -4.186 9.043 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.323 3.677 4 O -0.419 6.419 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.138 5.138 8 C -0.597 4.597 9 H 0.110 0.890 10 C -0.075 4.075 11 N -0.419 5.419 12 Si 0.746 3.254 13 H -0.194 1.194 14 H -0.238 1.238 15 H -0.217 1.217 16 C 0.230 3.770 17 O -0.488 6.488 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.146 4.146 22 C -0.151 4.151 23 H 0.080 0.920 24 H 0.150 0.850 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.203 0.797 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.566 -4.017 8.985 17.579 hybrid contribution 0.760 0.881 -0.556 1.290 sum -13.806 -3.136 8.429 16.477 Atomic orbital electron populations 1.23597 0.74507 1.05787 1.02770 1.86525 1.25296 1.32507 1.83656 1.23526 0.91488 0.81409 0.71282 1.90641 1.67616 1.36982 1.46663 1.21937 0.87475 1.00271 1.07232 1.21400 0.80288 0.94621 1.03994 1.43593 1.05127 1.60703 1.04394 1.18529 0.89818 1.65798 0.85513 0.88979 1.25433 0.95838 0.97767 0.88501 1.70585 1.06604 1.30547 1.34182 0.86909 0.75782 0.82961 0.79725 1.19352 1.23767 1.21696 1.19093 0.87215 0.86821 0.83858 1.90440 1.16138 1.57239 1.85019 1.23993 0.98628 1.01899 0.93099 1.24730 0.96764 0.97463 0.96592 1.25265 0.94686 0.94068 0.97280 1.23816 0.97288 1.01392 0.92084 1.24325 0.97979 0.96389 0.96432 0.92031 0.85015 0.91370 0.87564 0.86208 0.88833 0.90789 0.91133 0.90961 0.89662 0.79736 0.91313 0.91586 0.89711 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.93 10.57 -51.43 -0.54 -9.47 16 3 C 0.48 13.88 7.90 71.24 0.56 14.44 16 4 O -0.53 -17.16 15.73 21.98 0.35 -16.81 16 5 C -0.13 -4.23 5.31 29.85 0.16 -4.07 16 6 C 0.12 4.63 4.22 86.38 0.36 5.00 16 7 N -0.42 -20.79 2.62 -635.55 -1.67 -22.45 16 8 C -0.48 -26.99 9.64 84.04 0.81 -26.18 16 9 H 0.09 5.23 8.06 -2.91 -0.02 5.20 16 10 C 0.15 8.61 3.93 84.93 0.33 8.95 16 11 N -0.79 -46.94 13.95 21.66 0.30 -46.64 16 12 Si 0.92 50.37 26.44 68.60 1.81 52.19 16 13 H -0.27 -15.67 5.77 99.48 0.57 -15.09 16 14 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16 15 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 16 C 0.44 21.90 7.34 87.66 0.64 22.55 16 17 O -0.60 -35.31 10.51 -3.07 -0.03 -35.34 16 18 C -0.17 -6.41 2.43 -63.69 -0.15 -6.57 16 19 C -0.12 -3.38 7.25 31.90 0.23 -3.15 16 20 C -0.10 -2.15 8.58 -20.74 -0.18 -2.33 16 21 C -0.11 -3.38 7.78 30.60 0.24 -3.14 16 22 C -0.11 -3.13 5.96 31.08 0.19 -2.95 16 23 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 24 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 26 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 27 H 0.12 3.67 5.10 -2.39 -0.01 3.66 16 28 H 0.09 3.26 4.28 -2.39 -0.01 3.25 16 29 H 0.07 2.90 8.00 -2.39 -0.02 2.88 16 30 H 0.28 15.46 8.32 -92.71 -0.77 14.68 16 31 H 0.07 2.07 7.91 -2.39 -0.02 2.05 16 32 H 0.09 2.30 6.19 -2.38 -0.01 2.28 16 33 H 0.19 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16 35 H 0.07 2.10 7.91 -2.39 -0.02 2.08 16 36 H 0.08 2.16 5.45 -2.39 -0.01 2.14 16 37 H 0.08 2.07 7.93 -2.38 -0.02 2.05 16 Total: -1.00 -73.62 298.47 5.56 -68.06 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.95 Total: 6.30 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.39 Total: 4.17 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -1.36 Total: -69.09 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -0.23 Total: -61.62 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.81 Total: 52.19 kcal Total: -73.62 5.56 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.115 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds