Wall clock time and date at job start Mon Mar 30 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34771 * 117.00194 * 270.00525 * 12 2 1 14 14 O 1.21533 * 120.00337 * 359.97438 * 13 12 2 15 15 C 1.47282 * 119.99567 * 179.97438 * 13 12 2 16 16 C 1.36168 * 126.45403 * 180.02562 * 15 13 12 17 17 O 1.34236 * 106.93998 * 179.97438 * 16 15 13 18 18 C 1.34057 * 108.23795 * 359.97438 * 17 16 15 19 19 C 1.50704 * 125.36666 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46693 * 240.02648 * 19 18 17 21 21 C 1.52998 * 109.46952 * 0.02562 * 19 18 17 22 22 C 1.52995 * 109.47270 * 120.02768 * 19 18 17 23 23 N 1.29918 * 109.26277 * 359.76201 * 18 17 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.08005 * 126.53595 * 359.93798 * 16 15 13 29 29 H 1.08995 * 109.47443 * 59.99778 * 20 19 18 30 30 H 1.08996 * 109.46561 * 180.02562 * 20 19 18 31 31 H 1.09005 * 109.47212 * 299.99543 * 20 19 18 32 32 H 1.08995 * 109.47151 * 60.00361 * 21 19 18 33 33 H 1.08999 * 109.46681 * 180.02562 * 21 19 18 34 34 H 1.08995 * 109.47212 * 300.00240 * 21 19 18 35 35 H 1.09000 * 109.47329 * 59.99223 * 22 19 18 36 36 H 1.09002 * 109.47181 * 180.02562 * 22 19 18 37 37 H 1.09005 * 109.46936 * 299.99665 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1857 13 6 2.2179 0.0672 2.2856 14 8 1.9976 1.2620 2.2547 15 6 2.7076 -0.5595 3.5252 16 6 2.9573 0.0704 4.7063 17 8 3.3854 -0.8669 5.5666 18 6 3.3984 -2.0464 4.9297 19 6 3.8161 -3.3610 5.5368 20 6 5.0024 -3.9295 4.7554 21 6 4.2235 -3.1427 6.9953 22 6 2.6465 -4.3455 5.4759 23 7 2.9897 -1.8783 3.7080 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.8348 1.1236 4.9118 29 1 5.8356 -3.2282 4.7987 30 1 5.3042 -4.8805 5.1942 31 1 4.7121 -4.0851 3.7163 32 1 3.3784 -2.7377 7.5519 33 1 4.5261 -4.0934 7.4341 34 1 5.0567 -2.4413 7.0386 35 1 2.3561 -4.5009 4.4368 36 1 2.9485 -5.2962 5.9154 37 1 1.8013 -3.9405 6.0326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873504677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:34 Heat of formation + Delta-G solvation = -80.559999 kcal Electronic energy + Delta-G solvation = -20295.059237 eV Core-core repulsion = 17039.029120 eV Total energy + Delta-G solvation = -3256.030118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.42576 -39.30332 -37.18270 -35.73874 -34.71300 -33.19477 -30.03599 -29.40377 -27.61191 -27.50659 -25.31708 -24.56762 -23.28002 -21.47040 -20.15126 -19.26020 -17.74457 -16.82171 -16.57514 -16.46388 -15.52529 -15.26062 -14.87599 -14.47159 -14.27256 -14.22870 -13.50074 -12.96029 -12.57111 -12.52660 -12.24439 -11.97074 -11.90719 -11.79001 -11.44586 -11.26259 -11.22845 -11.06509 -10.97562 -10.81546 -10.58331 -10.37186 -10.26630 -9.94482 -9.53542 -8.98216 -8.88963 -8.46216 -6.15487 -4.21880 1.15349 2.12604 2.51253 3.29385 3.31009 3.33256 3.43218 3.56872 3.88562 4.36062 4.50271 4.60414 4.75995 4.91950 5.17436 5.30509 5.37911 5.39230 5.45574 5.51052 5.56823 5.65279 5.66501 5.74562 5.87434 6.06655 6.07436 6.20617 6.64215 6.91187 6.91708 7.12385 7.55038 7.62823 7.73115 7.92549 8.15394 8.60868 8.89772 9.43022 10.92153 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.004452 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.760056 B = 6288.113262 C = 6945.258078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.332 6.332 13 C 0.540 3.460 14 O -0.515 6.515 15 C -0.040 4.040 16 C 0.004 3.996 17 O -0.195 6.195 18 C 0.195 3.805 19 C 0.034 3.966 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.141 4.141 23 N -0.431 5.431 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.232 0.768 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -7.605 18.248 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.246 6.246 13 C 0.383 3.617 14 O -0.406 6.406 15 C -0.158 4.158 16 C -0.069 4.069 17 O -0.081 6.081 18 C -0.015 4.015 19 C 0.033 3.967 20 C -0.199 4.199 21 C -0.204 4.204 22 C -0.199 4.199 23 N -0.160 5.160 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.249 0.751 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.331 -7.623 17.572 19.882 hybrid contribution 0.180 0.502 -0.462 0.705 sum 5.511 -7.121 17.110 19.335 Atomic orbital electron populations 1.22169 0.97383 1.00260 1.01420 1.20744 0.91545 0.93966 0.77643 0.93423 1.20988 1.32476 1.13512 0.88748 0.91229 1.24876 0.94922 0.95105 0.99011 1.69887 1.36098 1.22610 1.24268 0.86311 0.79221 0.79566 0.80907 1.19896 1.21036 1.19975 1.86668 1.74901 1.42520 1.20526 1.19413 0.74557 0.84372 0.83383 1.90821 1.49716 1.15483 1.84601 1.21072 1.09604 0.90075 0.95079 1.25260 0.98832 0.95216 0.87556 1.84366 1.64926 1.17476 1.41372 1.26369 1.00285 0.87557 0.87271 1.19142 0.97376 0.84839 0.95364 1.21928 0.95827 1.00893 1.01275 1.21918 1.02271 1.02775 0.93423 1.21925 0.96242 0.97740 1.03985 1.70876 1.13656 1.16123 1.15310 0.94308 0.88096 0.96524 0.92352 0.75138 0.92163 0.90957 0.90685 0.91807 0.90958 0.91794 0.90697 0.90954 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 2 C 0.21 5.97 2.56 -27.89 -0.07 5.90 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -15.09 8.90 -34.44 -0.31 -15.40 16 5 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 O -0.33 -8.62 9.88 -40.69 -0.40 -9.02 16 13 C 0.54 12.41 7.93 34.41 0.27 12.68 16 14 O -0.52 -12.46 16.15 -19.29 -0.31 -12.77 16 15 C -0.04 -0.74 7.04 -83.04 -0.58 -1.33 16 16 C 0.00 0.06 11.95 29.99 0.36 0.42 16 17 O -0.20 -2.58 10.10 6.55 0.07 -2.51 16 18 C 0.19 2.71 6.44 -13.09 -0.08 2.63 16 19 C 0.03 0.34 0.99 -155.66 -0.15 0.18 16 20 C -0.14 -1.31 8.46 37.16 0.31 -1.00 16 21 C -0.15 -1.08 8.01 37.16 0.30 -0.79 16 22 C -0.14 -1.29 8.45 37.15 0.31 -0.98 16 23 N -0.43 -7.70 11.36 -7.67 -0.09 -7.79 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.10 2.79 6.07 -51.93 -0.32 2.47 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.23 2.48 8.06 -52.48 -0.42 2.06 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -32.77 321.99 -4.97 -37.74 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.31 Total: -2.23 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.61 Total: 0.29 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.54 Total: -32.86 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.65 Total: -24.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.77 -4.97 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873504677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.818 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds