Wall clock time and date at job start Mon Mar 30 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 O 1.45206 * 109.47226 * 119.99431 * 2 1 3 13 13 C 1.34771 * 117.00194 * 270.00525 * 12 2 1 14 14 O 1.21533 * 120.00337 * 359.97438 * 13 12 2 15 15 C 1.47282 * 119.99567 * 179.97438 * 13 12 2 16 16 C 1.36168 * 126.45403 * 180.02562 * 15 13 12 17 17 O 1.34236 * 106.93998 * 179.97438 * 16 15 13 18 18 C 1.34057 * 108.23795 * 359.97438 * 17 16 15 19 19 C 1.50704 * 125.36666 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.46693 * 240.02648 * 19 18 17 21 21 C 1.52998 * 109.46952 * 0.02562 * 19 18 17 22 22 C 1.52995 * 109.47270 * 120.02768 * 19 18 17 23 23 N 1.29918 * 109.26277 * 359.76201 * 18 17 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.08005 * 126.53595 * 359.93798 * 16 15 13 29 29 H 1.08995 * 109.47443 * 59.99778 * 20 19 18 30 30 H 1.08996 * 109.46561 * 180.02562 * 20 19 18 31 31 H 1.09005 * 109.47212 * 299.99543 * 20 19 18 32 32 H 1.08995 * 109.47151 * 60.00361 * 21 19 18 33 33 H 1.08999 * 109.46681 * 180.02562 * 21 19 18 34 34 H 1.08995 * 109.47212 * 300.00240 * 21 19 18 35 35 H 1.09000 * 109.47329 * 59.99223 * 22 19 18 36 36 H 1.09002 * 109.47181 * 180.02562 * 22 19 18 37 37 H 1.09005 * 109.46936 * 299.99665 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 8 2.0140 -0.6844 1.1857 13 6 2.2179 0.0672 2.2856 14 8 1.9976 1.2620 2.2547 15 6 2.7076 -0.5595 3.5252 16 6 2.9573 0.0704 4.7063 17 8 3.3854 -0.8669 5.5666 18 6 3.3984 -2.0464 4.9297 19 6 3.8161 -3.3610 5.5368 20 6 5.0024 -3.9295 4.7554 21 6 4.2235 -3.1427 6.9953 22 6 2.6465 -4.3455 5.4759 23 7 2.9897 -1.8783 3.7080 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.8348 1.1236 4.9118 29 1 5.8356 -3.2282 4.7987 30 1 5.3042 -4.8805 5.1942 31 1 4.7121 -4.0851 3.7163 32 1 3.3784 -2.7377 7.5519 33 1 4.5261 -4.0934 7.4341 34 1 5.0567 -2.4413 7.0386 35 1 2.3561 -4.5009 4.4368 36 1 2.9485 -5.2962 5.9154 37 1 1.8013 -3.9405 6.0326 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873504677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:34 Heat of formation + Delta-G solvation = -102.887235 kcal Electronic energy + Delta-G solvation = -20296.027419 eV Core-core repulsion = 17039.029120 eV Total energy + Delta-G solvation = -3256.998300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.62745 -41.19242 -38.00329 -37.67625 -36.00011 -35.32717 -31.84489 -31.00267 -28.25487 -28.22804 -27.51030 -26.13753 -24.35079 -23.22702 -21.78691 -20.52592 -19.27939 -18.63188 -18.03383 -17.97585 -17.22229 -16.73494 -16.47527 -16.15404 -15.30591 -14.94576 -14.88459 -14.57446 -14.29419 -13.97985 -13.30500 -13.24902 -13.07116 -13.05109 -12.85502 -12.60942 -12.60647 -12.49766 -12.42811 -12.19511 -12.05931 -11.97855 -11.87593 -11.66587 -11.64825 -11.06518 -10.63350 -10.20683 -8.31749 -6.48939 -0.15556 0.79908 1.36716 1.40921 1.44350 1.52315 1.79626 1.94686 2.36862 2.75640 2.98591 3.56954 3.71641 3.88773 3.90075 4.05257 4.34028 4.43330 4.47775 4.72071 4.73170 4.74680 4.75483 4.82322 4.84651 4.96425 4.96499 5.05130 5.09058 5.27981 5.34680 5.40918 5.42170 5.54970 5.79181 5.97971 6.35246 6.55123 6.83338 7.21921 8.76175 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.004452 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.760056 B = 6288.113262 C = 6945.258078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.552 4.552 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.985 3.015 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.269 1.269 12 O -0.348 6.348 13 C 0.536 3.464 14 O -0.537 6.537 15 C -0.090 4.090 16 C 0.050 3.950 17 O -0.181 6.181 18 C 0.209 3.791 19 C 0.030 3.970 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.139 4.139 23 N -0.474 5.474 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.025 0.975 27 H 0.273 0.727 28 H 0.269 0.731 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -8.890 19.869 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.590 4.590 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.807 3.193 9 H -0.190 1.190 10 H -0.197 1.197 11 H -0.194 1.194 12 O -0.264 6.264 13 C 0.382 3.618 14 O -0.429 6.429 15 C -0.207 4.207 16 C -0.024 4.024 17 O -0.067 6.067 18 C -0.001 4.001 19 C 0.029 3.971 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.197 4.197 23 N -0.203 5.203 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.284 0.716 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.303 -8.908 19.210 22.093 hybrid contribution -0.095 0.913 -0.835 1.240 sum 6.208 -7.995 18.375 20.979 Atomic orbital electron populations 1.21989 0.96429 1.00348 1.01103 1.20506 0.92301 0.92284 0.78696 0.96807 1.21215 1.33776 1.13997 0.89995 0.91969 1.25817 0.94568 0.95651 1.01974 1.69990 1.36286 1.23495 1.25463 0.85216 0.78780 0.78617 0.76686 1.18952 1.19678 1.19375 1.86650 1.75623 1.43028 1.21069 1.20024 0.73790 0.84291 0.83717 1.90782 1.50871 1.16220 1.85022 1.20735 1.13849 0.91394 0.94698 1.25853 0.94611 0.96307 0.85660 1.84442 1.64355 1.17244 1.40647 1.27280 0.97888 0.88728 0.86245 1.19532 0.97804 0.82785 0.96980 1.21943 0.95407 1.02507 0.99890 1.21928 1.02329 1.04454 0.91132 1.21939 0.96073 0.99092 1.02588 1.70801 1.15767 1.16040 1.17647 0.93870 0.89498 0.95590 0.91762 0.71569 0.92260 0.87685 0.93397 0.91635 0.88160 0.91707 0.93351 0.87708 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 2 C 0.22 12.59 2.56 29.85 0.08 12.67 16 3 H 0.01 0.90 7.16 -2.39 -0.02 0.88 16 4 C -0.55 -33.14 8.90 25.60 0.23 -32.91 16 5 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 9 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 O -0.35 -19.01 9.88 -56.82 -0.56 -19.57 16 13 C 0.54 25.62 7.93 70.20 0.56 26.18 16 14 O -0.54 -26.87 16.15 19.73 0.32 -26.55 16 15 C -0.09 -3.42 7.04 40.38 0.28 -3.13 16 16 C 0.05 1.34 11.95 67.34 0.80 2.15 16 17 O -0.18 -4.38 10.10 0.52 0.01 -4.37 16 18 C 0.21 5.58 6.44 88.39 0.57 6.15 16 19 C 0.03 0.54 0.99 -52.93 -0.05 0.48 16 20 C -0.14 -2.34 8.46 71.98 0.61 -1.74 16 21 C -0.14 -1.57 8.01 71.98 0.58 -1.00 16 22 C -0.14 -2.29 8.45 71.98 0.61 -1.68 16 23 N -0.47 -17.19 11.36 -293.09 -3.33 -20.51 16 24 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.09 4.95 6.07 -2.39 -0.01 4.93 16 26 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.27 4.97 8.06 -2.91 -0.02 4.95 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -74.06 321.99 5.14 -68.92 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.06 Total: 7.43 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.38 Total: 1.77 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -3.09 Total: -73.81 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.24 Total: -50.50 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.06 5.14 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873504677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.972 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds