Wall clock time and date at job start Mon Mar 30 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35773 * 116.99859 * 2 1 4 4 C 1.35126 * 125.84109 * 179.97438 * 3 2 1 5 5 C 1.41448 * 106.79190 * 179.97438 * 4 3 2 6 6 C 1.34437 * 106.89704 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.74118 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46997 * 90.00159 * 7 6 5 9 9 C 1.47846 * 110.99547 * 69.87578 * 8 7 6 10 10 C 1.54915 * 104.79538 * 213.63497 * 9 8 7 11 11 C 1.55138 * 101.64918 * 37.06908 * 10 9 8 12 12 O 1.42903 * 110.70514 * 82.73025 * 11 10 9 13 13 C 1.50702 * 110.70453 * 205.96503 * 11 10 9 14 14 H 1.07994 * 120.00075 * 113.60253 * 13 11 10 15 15 C 1.37882 * 119.99448 * 293.60045 * 13 11 10 16 16 N 1.31507 * 120.00690 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99337 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47163 * 90.00356 * 17 15 13 19 19 H 1.48502 * 109.47114 * 209.99823 * 17 15 13 20 20 H 1.48502 * 109.47427 * 330.00136 * 17 15 13 21 21 C 1.47437 * 111.00223 * 309.03175 * 8 7 6 22 22 O 1.34330 * 125.84284 * 0.29735 * 3 2 1 23 23 H 1.09001 * 109.47046 * 60.00660 * 1 2 3 24 24 H 1.09007 * 109.47245 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47400 * 300.00139 * 1 2 3 26 26 H 1.08005 * 126.60438 * 0.03031 * 4 3 2 27 27 H 1.07999 * 126.54853 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47022 * 330.00609 * 7 6 5 29 29 H 1.09001 * 109.47374 * 210.00603 * 7 6 5 30 30 H 1.08995 * 110.38030 * 332.46412 * 9 8 7 31 31 H 1.09000 * 110.37255 * 94.81067 * 9 8 7 32 32 H 1.08995 * 110.99221 * 155.16374 * 10 9 8 33 33 H 1.09001 * 110.98790 * 278.98277 * 10 9 8 34 34 H 0.96708 * 113.99729 * 66.39819 * 12 11 10 35 35 H 0.96997 * 120.00710 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.89349 * 242.66131 * 21 8 7 37 37 H 1.08999 * 109.89127 * 3.85194 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3806 1.4175 0.0005 5 6 3.5762 2.8184 -0.0003 6 6 2.3562 3.3832 -0.0018 7 6 2.0714 4.8631 -0.0026 8 7 1.9804 5.3435 -1.3878 9 6 0.7596 4.8320 -2.0467 10 6 1.1647 4.6302 -3.5283 11 6 2.6241 4.1230 -3.3877 12 8 2.6478 2.7189 -3.1234 13 6 3.4224 4.4476 -4.6241 14 1 4.2379 5.1535 -4.5704 15 6 3.1115 3.8430 -5.8237 16 7 2.1182 2.9837 -5.8891 17 14 4.1015 4.2448 -7.3560 18 1 5.2476 3.3069 -7.4649 19 1 3.2353 4.1090 -8.5546 20 1 4.6085 5.6377 -7.2668 21 6 3.1523 4.9157 -2.1736 22 8 1.4322 2.4050 0.0057 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.1502 0.6597 0.0005 27 1 4.5244 3.3353 -0.0006 28 1 2.8762 5.3882 0.5119 29 1 1.1283 5.0519 0.5102 30 1 0.4581 3.8831 -1.6032 31 1 -0.0469 5.5611 -1.9699 32 1 0.5350 3.8801 -4.0066 33 1 1.1299 5.5728 -4.0744 34 1 2.3255 2.1754 -3.8555 35 1 1.8993 2.5587 -6.7331 36 1 3.7090 5.7887 -2.5144 37 1 3.7940 4.2783 -1.5653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895108505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:26 Heat of formation + Delta-G solvation = -56.781742 kcal Electronic energy + Delta-G solvation = -21802.426871 eV Core-core repulsion = 18547.427855 eV Total energy + Delta-G solvation = -3254.999015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20628 -38.55703 -37.89818 -34.76902 -32.66805 -31.99808 -30.88800 -28.44858 -28.02825 -26.86006 -25.12296 -23.49791 -21.54252 -20.56202 -19.84018 -19.28728 -18.16849 -17.08090 -16.53985 -15.48394 -15.26025 -15.05164 -14.84727 -14.41844 -13.91889 -13.68050 -13.56902 -12.75663 -12.38587 -12.36897 -12.11021 -11.98604 -11.69034 -11.58926 -11.25675 -11.20079 -10.91345 -10.80422 -10.57728 -10.41296 -10.29518 -9.86396 -9.36933 -9.07452 -8.55926 -8.00741 -7.85269 -7.37543 -6.17100 -4.23836 2.27164 2.84737 3.18143 3.24738 3.31768 3.35135 3.66213 4.33509 4.72557 5.09620 5.13110 5.22924 5.28758 5.39429 5.50362 5.54584 5.76276 5.87704 6.05866 6.10134 6.21512 6.29673 6.35319 6.42593 6.51733 6.60370 6.95292 6.98409 7.09749 7.20707 7.43883 7.52137 7.62157 7.70906 7.74459 7.87183 8.19681 8.77273 9.44496 9.62463 10.89790 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.006915 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.707182 B = 4048.347580 C = 4501.192145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.273 6.273 3 C 0.177 3.823 4 C -0.220 4.220 5 C -0.159 4.159 6 C -0.044 4.044 7 C 0.131 3.869 8 N -0.518 5.518 9 C 0.036 3.964 10 C -0.131 4.131 11 C 0.243 3.757 12 O -0.579 6.579 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.041 3.959 22 O -0.198 6.198 23 H 0.061 0.939 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.378 0.622 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -1.518 11.008 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.187 6.187 3 C 0.084 3.916 4 C -0.240 4.240 5 C -0.179 4.179 6 C -0.094 4.094 7 C 0.002 3.998 8 N -0.240 5.240 9 C -0.091 4.091 10 C -0.170 4.170 11 C 0.202 3.798 12 O -0.388 6.388 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.085 4.085 22 O -0.099 6.099 23 H 0.079 0.921 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.014 -0.993 11.475 11.906 hybrid contribution 0.099 -0.995 -1.688 1.961 sum -2.915 -1.988 9.788 10.404 Atomic orbital electron populations 1.22972 0.77891 1.03880 1.02140 1.86409 1.22132 1.19738 1.90464 1.20181 0.89263 0.78088 1.04067 1.20567 0.91942 0.96633 1.14880 1.21171 0.97640 0.92964 1.06158 1.23010 0.86626 0.90495 1.09228 1.21071 1.02822 0.82668 0.93239 1.64063 1.04152 1.54975 1.00824 1.23145 0.91881 0.97232 0.96885 1.23178 1.00601 1.01170 0.92075 1.19577 0.90048 0.79664 0.90525 1.86162 1.88841 1.18367 1.45454 1.21628 1.16484 1.25374 0.93328 0.92112 1.24990 0.94654 0.94510 0.99012 1.69597 1.28607 1.28862 1.26886 0.86492 0.79926 0.78885 0.82073 1.20573 1.21203 1.19791 1.23089 0.91994 0.98336 0.95117 1.83882 1.38268 1.14083 1.73620 0.92069 0.88050 0.92718 0.83728 0.83662 0.88197 0.90284 0.93853 0.92092 0.91144 0.92022 0.77096 0.92424 0.90505 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.76 101.05 1.09 1.41 16 2 O -0.27 -4.51 10.57 -42.17 -0.45 -4.96 16 3 C 0.18 3.27 7.87 29.63 0.23 3.50 16 4 C -0.22 -3.99 10.94 -39.47 -0.43 -4.43 16 5 C -0.16 -2.83 8.89 -39.70 -0.35 -3.18 16 6 C -0.04 -0.78 5.17 -35.65 -0.18 -0.97 16 7 C 0.13 2.11 5.90 -4.98 -0.03 2.08 16 8 N -0.52 -9.92 5.41 -232.69 -1.26 -11.18 16 9 C 0.04 0.72 6.47 -2.29 -0.01 0.71 16 10 C -0.13 -3.08 5.66 -24.59 -0.14 -3.22 16 11 C 0.24 6.00 0.86 -89.95 -0.08 5.92 16 12 O -0.58 -15.06 13.01 -35.23 -0.46 -15.51 16 13 C -0.53 -14.26 8.21 -34.44 -0.28 -14.55 16 14 H 0.06 1.63 7.53 -52.49 -0.40 1.23 16 15 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 16 N -0.90 -24.32 10.69 55.43 0.59 -23.73 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.04 0.90 5.69 -2.84 -0.02 0.88 16 22 O -0.20 -3.71 9.21 -18.23 -0.17 -3.88 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 27 H 0.15 2.32 7.59 -52.49 -0.40 1.93 16 28 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.04 0.90 6.32 -51.93 -0.33 0.58 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.76 7.76 -51.93 -0.40 1.36 16 33 H 0.06 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.38 10.39 6.99 45.56 0.32 10.71 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.08 1.67 7.63 -51.93 -0.40 1.27 16 37 H 0.07 1.39 4.37 -51.93 -0.23 1.16 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -29.03 302.86 -6.84 -35.86 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.34 Total: 12.99 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.30 Total: -10.07 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.67 Total: -34.90 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.07 Total: -24.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.03 -6.84 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.921 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds