Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00131 * 2 1 4 4 C 1.52992 * 109.47309 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47432 * 65.00104 * 4 3 2 6 6 C 1.37106 * 120.00035 * 270.00263 * 5 4 3 7 7 H 1.07993 * 119.99841 * 143.00510 * 6 5 4 8 8 C 1.38948 * 119.99830 * 323.00835 * 6 5 4 9 9 N 1.31407 * 120.00293 * 156.89261 * 8 6 5 10 10 Si 1.86805 * 119.99799 * 336.88750 * 8 6 5 11 11 H 1.48495 * 109.47032 * 95.34229 * 10 8 6 12 12 H 1.48502 * 109.47109 * 215.34167 * 10 8 6 13 13 H 1.48499 * 109.47122 * 335.33589 * 10 8 6 14 14 C 1.34783 * 120.00252 * 89.99566 * 5 4 3 15 15 O 1.21293 * 119.99723 * 5.34065 * 14 5 4 16 16 C 1.50700 * 120.00063 * 185.05848 * 14 5 4 17 17 H 1.08995 * 115.52406 * 300.65076 * 16 14 5 18 18 C 1.52950 * 117.45796 * 86.13677 * 16 14 5 19 19 H 1.09000 * 119.09302 * 356.61974 * 18 16 14 20 20 C 1.51827 * 118.42752 * 202.82661 * 18 16 14 21 21 O 1.20757 * 127.57423 * 139.75088 * 20 18 16 22 22 C 1.52478 * 104.84947 * 319.71970 * 20 18 16 23 23 C 1.54913 * 102.93862 * 321.66507 * 22 20 18 24 24 C 1.53036 * 117.45672 * 155.20004 * 16 14 5 25 25 H 1.08999 * 119.43677 * 3.92115 * 24 16 14 26 26 H 1.09000 * 109.47342 * 300.00101 * 1 2 3 27 27 H 1.09001 * 109.47105 * 60.00504 * 1 2 3 28 28 H 1.09007 * 109.46873 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46757 * 59.99572 * 3 2 1 30 30 H 1.09001 * 109.47290 * 299.99992 * 3 2 1 31 31 H 1.09003 * 109.47204 * 304.99945 * 4 3 2 32 32 H 1.09005 * 109.47404 * 185.00055 * 4 3 2 33 33 H 0.97000 * 120.00266 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.72291 * 80.02617 * 22 20 18 35 35 H 1.08997 * 110.72414 * 203.29959 * 22 20 18 36 36 H 1.08996 * 110.58772 * 156.36982 * 23 22 20 37 37 H 1.09002 * 110.58139 * 279.12323 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0980 -0.7991 -1.3345 7 1 3.8323 -1.3098 -2.2482 8 6 4.5627 -1.5235 -0.2436 9 7 4.2683 -2.7990 -0.1283 10 14 5.6060 -0.6842 1.0589 11 1 4.7379 -0.2437 2.1802 12 1 6.6251 -1.6375 1.5668 13 1 6.2846 0.4956 0.4650 14 6 4.2634 1.3329 -2.3200 15 8 4.2499 2.5416 -2.2188 16 6 4.6068 0.6910 -3.6395 17 1 5.4748 0.0319 -3.6293 18 6 3.4476 0.3164 -4.5644 19 1 2.4246 0.4713 -4.2215 20 6 3.6753 -0.7626 -5.6080 21 8 2.9132 -1.6384 -5.9401 22 6 5.0774 -0.4969 -6.1452 23 6 5.1427 1.0500 -6.1943 24 6 4.3573 1.5093 -4.9084 25 1 4.0067 2.5377 -4.8223 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.5930 -3.3048 0.6331 34 1 5.8322 -0.8935 -5.4661 35 1 5.1947 -0.9197 -7.1430 36 1 6.1771 1.3914 -6.1553 37 1 4.6498 1.4261 -7.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909561276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = -68.078588 kcal Electronic energy + Delta-G solvation = -21233.103545 eV Core-core repulsion = 17977.614662 eV Total energy + Delta-G solvation = -3255.488883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32187 -38.70588 -37.28314 -36.57712 -34.81129 -31.98557 -31.10123 -29.39952 -26.10867 -25.91672 -25.10049 -23.98296 -22.24552 -20.05008 -19.14552 -18.61274 -17.37912 -16.53574 -15.94688 -15.65482 -15.37161 -15.23189 -14.71424 -14.47913 -14.33836 -13.99092 -13.52387 -13.21623 -13.01431 -12.56496 -12.34731 -12.09247 -11.87037 -11.69252 -11.45919 -11.32191 -11.16890 -10.89850 -10.76212 -10.21423 -9.94910 -9.91596 -9.88810 -9.26449 -9.09847 -9.04295 -8.61665 -7.84713 -6.42247 -3.97980 2.06258 3.04924 3.21553 3.28171 3.50689 3.83684 4.16299 4.24772 4.41433 4.49702 4.67557 4.85779 5.03907 5.17175 5.22392 5.34758 5.51858 5.58368 5.63992 5.72921 5.79112 5.82577 5.87973 5.92075 5.99834 6.03041 6.06933 6.12194 6.26894 6.32747 6.42714 6.51094 7.30974 7.77076 7.80184 8.08370 8.29183 8.95459 9.33693 9.62072 10.68501 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.007516 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.776106 B = 3724.267236 C = 3949.624220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.056 3.944 4 C 0.099 3.901 5 N -0.443 5.443 6 C -0.333 4.333 7 H 0.104 0.896 8 C 0.077 3.923 9 N -0.848 5.848 10 Si 0.867 3.133 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.499 3.501 15 O -0.599 6.599 16 C -0.083 4.083 17 H 0.128 0.872 18 C -0.221 4.221 19 H 0.121 0.879 20 C 0.402 3.598 21 O -0.441 6.441 22 C -0.186 4.186 23 C -0.087 4.087 24 C -0.125 4.125 25 H 0.132 0.868 26 H 0.029 0.971 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 6.328 -5.136 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.161 5.161 6 C -0.460 4.460 7 H 0.122 0.878 8 C -0.132 4.132 9 N -0.482 5.482 10 Si 0.695 3.305 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.288 3.712 15 O -0.485 6.485 16 C -0.104 4.104 17 H 0.145 0.855 18 C -0.241 4.241 19 H 0.139 0.861 20 C 0.276 3.724 21 O -0.313 6.313 22 C -0.224 4.224 23 C -0.125 4.125 24 C -0.143 4.143 25 H 0.149 0.851 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.481 6.057 -5.138 7.957 hybrid contribution 0.125 0.338 1.022 1.083 sum -0.356 6.394 -4.117 7.613 Atomic orbital electron populations 1.22662 0.83020 1.02181 0.98638 1.88252 1.17662 1.26307 1.94972 1.22847 0.94803 0.85416 0.99176 1.21763 0.92334 0.99147 0.89196 1.43593 1.56255 1.07212 1.09038 1.18959 1.45122 0.78795 1.03136 0.87816 1.25205 0.95856 0.95073 0.97037 1.69802 1.39951 1.08576 1.29886 0.87107 0.81029 0.80227 0.82137 1.20127 1.21437 1.18594 1.19274 0.80447 0.86032 0.85418 1.90544 1.58244 1.14278 1.85449 1.21812 0.98441 1.00798 0.89337 0.85451 1.23594 0.98775 0.99171 1.02525 0.86131 1.24324 0.87539 0.80492 0.80009 1.90387 1.52132 1.30252 1.58540 1.23096 0.97719 0.98045 1.03501 1.22429 1.01108 0.92870 0.96082 1.23908 1.00390 0.96102 0.93927 0.85053 0.95217 0.94963 0.90014 0.93839 0.93571 0.90586 0.89522 0.91634 0.87159 0.89149 0.90013 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.67 10.18 -35.23 -0.36 -8.03 16 3 C 0.06 1.10 6.28 37.15 0.23 1.33 16 4 C 0.10 2.17 4.70 -4.05 -0.02 2.15 16 5 N -0.44 -10.48 2.16 -114.82 -0.25 -10.73 16 6 C -0.33 -8.61 8.66 -14.93 -0.13 -8.74 16 7 H 0.10 2.87 7.36 -52.49 -0.39 2.49 16 8 C 0.08 2.02 5.29 -17.47 -0.09 1.93 16 9 N -0.85 -23.58 13.96 55.50 0.77 -22.80 16 10 Si 0.87 20.21 25.08 -169.99 -4.26 15.95 16 11 H -0.27 -6.21 6.66 56.52 0.38 -5.84 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 14 C 0.50 11.17 7.32 -10.98 -0.08 11.09 16 15 O -0.60 -14.18 16.16 5.55 0.09 -14.10 16 16 C -0.08 -1.55 3.88 -91.78 -0.36 -1.90 16 17 H 0.13 2.28 7.12 -51.93 -0.37 1.91 16 18 C -0.22 -3.87 6.49 -90.77 -0.59 -4.46 16 19 H 0.12 2.28 8.14 -51.93 -0.42 1.85 16 20 C 0.40 6.78 7.85 -27.59 -0.22 6.56 16 21 O -0.44 -8.85 17.99 6.00 0.11 -8.74 16 22 C -0.19 -2.33 6.32 -25.99 -0.16 -2.49 16 23 C -0.09 -0.99 6.87 -23.26 -0.16 -1.15 16 24 C -0.12 -1.88 6.85 -87.66 -0.60 -2.48 16 25 H 0.13 2.00 7.97 -51.93 -0.41 1.59 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.74 3.25 -51.93 -0.17 1.57 16 32 H 0.09 1.80 7.36 -51.93 -0.38 1.41 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.11 1.33 7.32 -51.93 -0.38 0.95 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -31.22 309.87 -5.36 -36.57 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.07 Total: 3.74 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.06 Total: 3.47 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.53 Total: -33.53 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.16 Total: -30.87 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.26 Total: 15.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.22 -5.36 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.506 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds