Wall clock time and date at job start Mon Mar 30 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00131 * 2 1 4 4 C 1.52992 * 109.47309 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47432 * 65.00104 * 4 3 2 6 6 C 1.37106 * 120.00035 * 270.00263 * 5 4 3 7 7 H 1.07993 * 119.99841 * 143.00510 * 6 5 4 8 8 C 1.38948 * 119.99830 * 323.00835 * 6 5 4 9 9 N 1.31407 * 120.00293 * 156.89261 * 8 6 5 10 10 Si 1.86805 * 119.99799 * 336.88750 * 8 6 5 11 11 H 1.48495 * 109.47032 * 95.34229 * 10 8 6 12 12 H 1.48502 * 109.47109 * 215.34167 * 10 8 6 13 13 H 1.48499 * 109.47122 * 335.33589 * 10 8 6 14 14 C 1.34783 * 120.00252 * 89.99566 * 5 4 3 15 15 O 1.21293 * 119.99723 * 5.34065 * 14 5 4 16 16 C 1.50700 * 120.00063 * 185.05848 * 14 5 4 17 17 H 1.08995 * 115.52406 * 300.65076 * 16 14 5 18 18 C 1.52950 * 117.45796 * 86.13677 * 16 14 5 19 19 H 1.09000 * 119.09302 * 356.61974 * 18 16 14 20 20 C 1.51827 * 118.42752 * 202.82661 * 18 16 14 21 21 O 1.20757 * 127.57423 * 139.75088 * 20 18 16 22 22 C 1.52478 * 104.84947 * 319.71970 * 20 18 16 23 23 C 1.54913 * 102.93862 * 321.66507 * 22 20 18 24 24 C 1.53036 * 117.45672 * 155.20004 * 16 14 5 25 25 H 1.08999 * 119.43677 * 3.92115 * 24 16 14 26 26 H 1.09000 * 109.47342 * 300.00101 * 1 2 3 27 27 H 1.09001 * 109.47105 * 60.00504 * 1 2 3 28 28 H 1.09007 * 109.46873 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46757 * 59.99572 * 3 2 1 30 30 H 1.09001 * 109.47290 * 299.99992 * 3 2 1 31 31 H 1.09003 * 109.47204 * 304.99945 * 4 3 2 32 32 H 1.09005 * 109.47404 * 185.00055 * 4 3 2 33 33 H 0.97000 * 120.00266 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.72291 * 80.02617 * 22 20 18 35 35 H 1.08997 * 110.72414 * 203.29959 * 22 20 18 36 36 H 1.08996 * 110.58772 * 156.36982 * 23 22 20 37 37 H 1.09002 * 110.58139 * 279.12323 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0980 -0.7991 -1.3345 7 1 3.8323 -1.3098 -2.2482 8 6 4.5627 -1.5235 -0.2436 9 7 4.2683 -2.7990 -0.1283 10 14 5.6060 -0.6842 1.0589 11 1 4.7379 -0.2437 2.1802 12 1 6.6251 -1.6375 1.5668 13 1 6.2846 0.4956 0.4650 14 6 4.2634 1.3329 -2.3200 15 8 4.2499 2.5416 -2.2188 16 6 4.6068 0.6910 -3.6395 17 1 5.4748 0.0319 -3.6293 18 6 3.4476 0.3164 -4.5644 19 1 2.4246 0.4713 -4.2215 20 6 3.6753 -0.7626 -5.6080 21 8 2.9132 -1.6384 -5.9401 22 6 5.0774 -0.4969 -6.1452 23 6 5.1427 1.0500 -6.1943 24 6 4.3573 1.5093 -4.9084 25 1 4.0067 2.5377 -4.8223 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.5930 -3.3048 0.6331 34 1 5.8322 -0.8935 -5.4661 35 1 5.1947 -0.9197 -7.1430 36 1 6.1771 1.3914 -6.1553 37 1 4.6498 1.4261 -7.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909561276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:52 Heat of formation + Delta-G solvation = -88.966595 kcal Electronic energy + Delta-G solvation = -21234.009317 eV Core-core repulsion = 17977.614662 eV Total energy + Delta-G solvation = -3256.394655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75062 -40.35234 -38.80789 -38.07552 -36.65696 -33.96451 -32.35671 -30.97587 -27.34166 -27.29898 -26.96749 -25.55615 -23.78955 -21.42353 -20.68741 -20.14302 -19.01876 -18.26482 -17.60196 -17.22621 -16.86482 -16.58930 -16.30891 -16.07628 -15.92279 -15.48347 -15.18380 -14.78155 -14.42140 -14.22809 -13.96332 -13.59462 -13.28747 -13.13964 -13.02274 -12.64338 -12.52419 -12.44261 -12.24719 -12.00191 -11.72629 -11.37027 -11.26716 -11.03175 -10.65749 -10.48895 -10.30769 -9.76307 -8.44529 -6.02233 0.70809 1.20456 1.32097 1.42902 1.77076 2.21308 2.33605 2.81809 2.89335 3.10291 3.19225 3.40870 3.65582 3.85500 4.03211 4.07923 4.11682 4.22175 4.29549 4.33908 4.38849 4.49174 4.50954 4.55048 4.59317 4.73433 4.80264 4.86058 4.98260 5.11130 5.17347 5.22694 5.42612 6.09991 6.25211 6.36417 6.44923 6.99357 7.41086 7.73292 8.70274 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.007516 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.776106 B = 3724.267236 C = 3949.624220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.059 3.941 4 C 0.089 3.911 5 N -0.456 5.456 6 C -0.323 4.323 7 H 0.072 0.928 8 C 0.037 3.963 9 N -0.892 5.892 10 Si 0.923 3.077 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.498 3.502 15 O -0.611 6.611 16 C -0.107 4.107 17 H 0.134 0.866 18 C -0.241 4.241 19 H 0.093 0.907 20 C 0.397 3.603 21 O -0.483 6.483 22 C -0.175 4.175 23 C -0.073 4.073 24 C -0.090 4.090 25 H 0.133 0.867 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.276 0.724 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 8.047 -5.854 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.018 4.018 4 C -0.034 4.034 5 N -0.175 5.175 6 C -0.450 4.450 7 H 0.090 0.910 8 C -0.168 4.168 9 N -0.529 5.529 10 Si 0.748 3.252 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.185 1.185 14 C 0.288 3.712 15 O -0.498 6.498 16 C -0.127 4.127 17 H 0.151 0.849 18 C -0.261 4.261 19 H 0.112 0.888 20 C 0.275 3.725 21 O -0.358 6.358 22 C -0.212 4.212 23 C -0.110 4.110 24 C -0.109 4.109 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.621 7.807 -5.854 9.778 hybrid contribution -0.316 -0.130 1.210 1.257 sum 0.304 7.678 -4.644 8.978 Atomic orbital electron populations 1.22845 0.80636 1.02986 1.00397 1.88179 1.20474 1.27575 1.95322 1.22826 0.93320 0.85098 1.00575 1.21924 0.94152 0.99178 0.88143 1.43687 1.57172 1.06485 1.10181 1.18644 1.44590 0.79764 1.02030 0.91006 1.25746 0.96640 0.95443 0.98974 1.69884 1.41729 1.10052 1.31188 0.86221 0.79567 0.79169 0.80196 1.18955 1.21129 1.18515 1.19867 0.79109 0.85961 0.86261 1.90517 1.58544 1.14805 1.85948 1.21778 0.99028 1.02938 0.88991 0.84863 1.23601 0.97407 1.01962 1.03141 0.88831 1.24899 0.89170 0.79076 0.79322 1.90364 1.53935 1.31612 1.59931 1.23138 0.93930 0.99304 1.04803 1.22555 1.02501 0.91471 0.94503 1.24139 0.98222 0.95089 0.93414 0.84920 0.92319 0.94192 0.89821 0.90278 0.94089 0.91512 0.88455 0.91396 0.86456 0.86385 0.87030 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.20 10.18 -148.98 -1.52 -18.72 16 3 C 0.06 2.29 6.28 71.98 0.45 2.74 16 4 C 0.09 3.84 4.70 86.38 0.41 4.25 16 5 N -0.46 -21.77 2.16 -635.55 -1.37 -23.14 16 6 C -0.32 -17.13 8.66 84.04 0.73 -16.40 16 7 H 0.07 4.20 7.36 -2.91 -0.02 4.18 16 8 C 0.04 1.96 5.29 84.93 0.45 2.41 16 9 N -0.89 -50.91 13.96 21.66 0.30 -50.61 16 10 Si 0.92 41.78 25.08 68.60 1.72 43.50 16 11 H -0.26 -11.36 6.66 99.48 0.66 -10.70 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.50 22.28 7.32 87.66 0.64 22.92 16 15 O -0.61 -28.49 16.16 -3.07 -0.05 -28.54 16 16 C -0.11 -3.94 3.88 -11.54 -0.04 -3.98 16 17 H 0.13 4.71 7.12 -2.39 -0.02 4.69 16 18 C -0.24 -8.54 6.49 -10.89 -0.07 -8.61 16 19 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 20 C 0.40 13.30 7.85 30.04 0.24 13.53 16 21 O -0.48 -19.82 17.99 -1.44 -0.03 -19.84 16 22 C -0.17 -3.83 6.32 31.07 0.20 -3.64 16 23 C -0.07 -1.34 6.87 32.84 0.23 -1.11 16 24 C -0.09 -2.53 6.85 -8.88 -0.06 -2.59 16 25 H 0.13 3.74 7.97 -2.39 -0.02 3.72 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 2.60 8.14 -2.38 -0.02 2.59 16 29 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 3.00 3.25 -2.39 -0.01 2.99 16 32 H 0.10 3.93 7.36 -2.38 -0.02 3.91 16 33 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.12 2.51 7.32 -2.39 -0.02 2.49 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.83 309.87 4.49 -65.34 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.03 Total: 20.36 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 4.41 Total: 11.65 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.07 Total: -73.75 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -1.59 Total: -67.10 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.72 Total: 43.50 kcal Total: -69.83 4.49 -65.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.630 kcal (2) G-P(sol) polarization free energy of solvation -69.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds