Wall clock time and date at job start Mon Mar 30 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00314 * 179.97438 * 4 3 2 7 7 H 1.09000 * 115.61585 * 272.96133 * 6 4 3 8 8 C 1.51394 * 117.01889 * 127.45782 * 6 4 3 9 9 H 1.08997 * 116.30976 * 144.75972 * 8 6 4 10 10 C 1.52104 * 115.43659 * 5.20128 * 8 6 4 11 11 C 1.51713 * 112.45961 * 270.30304 * 10 8 6 12 12 N 1.45304 * 112.00256 * 41.33940 * 11 10 8 13 13 C 1.34779 * 118.82042 * 124.35510 * 12 11 10 14 14 O 1.21681 * 119.99600 * 354.20051 * 13 12 11 15 15 C 1.46377 * 120.00003 * 174.19835 * 13 12 11 16 16 H 1.07999 * 119.99943 * 6.83646 * 15 13 12 17 17 C 1.40043 * 119.99708 * 186.83355 * 15 13 12 18 18 N 1.30677 * 120.00196 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00004 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47351 * 90.00063 * 19 17 15 21 21 H 1.48498 * 109.47406 * 210.00051 * 19 17 15 22 22 H 1.48499 * 109.47238 * 330.00207 * 19 17 15 23 23 C 1.45522 * 122.36447 * 304.08374 * 12 11 10 24 24 C 1.51805 * 111.27922 * 39.90075 * 23 12 11 25 25 H 1.08997 * 114.57869 * 202.30021 * 24 23 12 26 26 H 1.08992 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47154 * 300.00141 * 1 2 3 28 28 H 1.08998 * 109.47079 * 59.99926 * 1 2 3 29 29 H 1.08996 * 109.47154 * 239.99859 * 2 1 3 30 30 H 1.09003 * 109.46980 * 119.99613 * 2 1 3 31 31 H 1.09002 * 108.88638 * 31.07107 * 10 8 6 32 32 H 1.09004 * 108.88310 * 149.62990 * 10 8 6 33 33 H 1.09003 * 108.97426 * 280.69143 * 11 10 8 34 34 H 1.09002 * 108.97543 * 161.99455 * 11 10 8 35 35 H 0.97000 * 119.99692 * 180.02562 * 18 17 15 36 36 H 1.08995 * 109.12209 * 160.36803 * 23 12 11 37 37 H 1.09002 * 109.11735 * 279.50116 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 4.0545 3.3916 -0.9818 8 6 4.9411 3.2599 1.0709 9 1 5.7486 3.9326 0.7819 10 6 5.3559 2.0910 1.9513 11 6 4.4740 1.9473 3.1774 12 7 3.0708 2.1611 2.8667 13 6 2.1818 1.1977 3.1801 14 8 2.5702 0.1300 3.6159 15 6 0.7493 1.4357 2.9962 16 1 0.4100 2.3373 2.5080 17 6 -0.1812 0.4943 3.4534 18 7 0.2293 -0.5964 4.0445 19 14 -2.0094 0.7984 3.2194 20 1 -2.4437 0.2279 1.9190 21 1 -2.7642 0.1494 4.3214 22 1 -2.2738 2.2596 3.2319 23 6 2.5898 3.3804 2.2345 24 6 3.5451 3.8545 1.1541 25 1 3.4663 4.9144 0.9125 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.3006 1.1723 1.3673 32 1 6.3859 2.2412 2.2749 33 1 4.7862 2.6757 3.9259 34 1 4.5976 0.9450 3.5874 35 1 -0.4153 -1.2486 4.3608 36 1 1.6132 3.1905 1.7893 37 1 2.4920 4.1597 2.9902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928117290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:52 Heat of formation + Delta-G solvation = -87.858880 kcal Electronic energy + Delta-G solvation = -22522.244713 eV Core-core repulsion = 19265.898092 eV Total energy + Delta-G solvation = -3256.346621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60840 -38.51413 -36.84327 -35.69120 -33.31032 -32.44627 -31.30931 -30.78975 -26.58643 -26.20318 -24.27873 -23.15805 -21.88632 -20.05754 -19.64760 -18.02366 -17.02874 -16.75794 -16.01588 -15.80477 -15.28614 -14.88234 -14.37931 -14.27738 -13.72052 -13.30765 -13.01340 -12.62814 -12.43246 -12.24702 -12.09264 -11.70371 -11.47067 -11.41222 -11.20176 -10.98571 -10.91379 -10.61680 -10.42763 -10.26264 -10.16792 -9.91148 -9.72670 -9.51484 -9.23846 -8.86160 -7.56639 -7.18954 -6.20770 -4.61838 2.83547 3.07900 3.18061 3.19796 3.26258 3.86112 4.05966 4.52122 4.60314 4.80095 4.95039 5.08494 5.42679 5.44154 5.65731 5.67991 5.75866 5.79009 5.83842 6.01301 6.02695 6.13152 6.20662 6.32418 6.37293 6.45048 6.57286 6.62686 6.72180 6.84593 6.91556 7.28580 7.45151 7.74057 8.19560 8.37529 8.45704 9.01662 9.42639 10.57615 10.76360 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.009273 C = 0.008191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.199939 B = 3018.769635 C = 3417.547684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.078 3.922 3 O -0.336 6.336 4 C 0.503 3.497 5 O -0.510 6.510 6 C -0.165 4.165 7 H 0.134 0.866 8 C -0.108 4.108 9 H 0.108 0.892 10 C -0.133 4.133 11 C 0.123 3.877 12 N -0.639 5.639 13 C 0.558 3.442 14 O -0.576 6.576 15 C -0.530 4.530 16 H 0.073 0.927 17 C 0.092 3.908 18 N -0.767 5.767 19 Si 0.888 3.112 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.149 3.851 24 C -0.131 4.131 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.267 0.733 36 H 0.103 0.897 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 8.094 -7.667 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 O -0.252 6.252 4 C 0.346 3.654 5 O -0.399 6.399 6 C -0.184 4.184 7 H 0.151 0.849 8 C -0.126 4.126 9 H 0.126 0.874 10 C -0.172 4.172 11 C -0.002 4.002 12 N -0.377 5.377 13 C 0.364 3.636 14 O -0.458 6.458 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.396 5.396 19 Si 0.713 3.287 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.187 1.187 23 C 0.025 3.975 24 C -0.150 4.150 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.987 7.000 -7.320 10.560 hybrid contribution -0.776 0.210 -0.279 0.850 sum 2.212 7.210 -7.599 10.706 Atomic orbital electron populations 1.21881 0.93142 1.02272 1.03696 1.22850 0.95233 0.79754 1.01682 1.86451 1.23332 1.32630 1.82770 1.22214 0.81160 0.90356 0.71678 1.90526 1.60643 1.42890 1.45884 1.21566 1.06765 0.92719 0.97320 0.84863 1.21777 0.92624 1.00177 0.98059 0.87394 1.21460 0.99224 0.98355 0.98116 1.20378 0.82957 1.02298 0.94537 1.47379 1.05890 1.18982 1.65463 1.18276 0.86259 0.81738 0.77297 1.90595 1.79961 1.25126 1.50167 1.20903 0.89078 1.06445 1.40296 0.90914 1.25652 0.99681 0.94180 0.93268 1.70009 1.34812 1.06850 1.27884 0.86729 0.83714 0.79647 0.78646 1.19218 1.20631 1.18707 1.20388 0.97130 0.87725 0.92270 1.22366 0.97393 0.97965 0.97268 0.86841 0.91431 0.89218 0.93036 0.93335 0.90027 0.88575 0.91558 0.94647 0.89476 0.92194 0.87902 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.29 37.16 0.38 -2.46 16 2 C 0.08 1.61 6.19 37.16 0.23 1.84 16 3 O -0.34 -6.88 9.26 -39.25 -0.36 -7.25 16 4 C 0.50 10.04 5.45 36.00 0.20 10.24 16 5 O -0.51 -11.54 14.17 -18.75 -0.27 -11.80 16 6 C -0.16 -2.57 6.20 -93.03 -0.58 -3.15 16 7 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16 8 C -0.11 -1.60 6.11 -92.41 -0.56 -2.16 16 9 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 10 C -0.13 -2.35 5.48 -27.84 -0.15 -2.50 16 11 C 0.12 2.55 6.31 -5.34 -0.03 2.51 16 12 N -0.64 -14.41 2.01 -178.58 -0.36 -14.77 16 13 C 0.56 15.21 7.26 -12.99 -0.09 15.11 16 14 O -0.58 -18.19 14.25 5.21 0.07 -18.12 16 15 C -0.53 -13.82 7.61 -35.63 -0.27 -14.10 16 16 H 0.07 1.77 5.77 -52.49 -0.30 1.47 16 17 C 0.09 2.39 4.89 -17.37 -0.08 2.30 16 18 N -0.77 -21.85 11.85 55.55 0.66 -21.20 16 19 Si 0.89 19.01 27.95 -169.99 -4.75 14.26 16 20 H -0.27 -5.42 7.07 56.52 0.40 -5.02 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C 0.15 2.77 5.32 -5.17 -0.03 2.74 16 24 C -0.13 -1.93 6.08 -92.20 -0.56 -2.49 16 25 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.09 1.88 4.24 -51.93 -0.22 1.66 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.08 2.04 8.02 -51.93 -0.42 1.63 16 31 H 0.10 1.99 5.04 -51.93 -0.26 1.73 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 2.08 6.73 -51.93 -0.35 1.73 16 35 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 36 H 0.10 2.04 5.07 -51.93 -0.26 1.77 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -32.98 294.39 -6.88 -39.86 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.75 Total: 6.68 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.56 Total: 7.89 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.97 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.56 Total: -37.17 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.75 Total: 14.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.98 -6.88 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928117290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.994 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds