Wall clock time and date at job start Mon Mar 30 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46837 * 2 1 4 4 C 1.34229 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00314 * 179.97438 * 4 3 2 7 7 H 1.09000 * 115.61585 * 272.96133 * 6 4 3 8 8 C 1.51394 * 117.01889 * 127.45782 * 6 4 3 9 9 H 1.08997 * 116.30976 * 144.75972 * 8 6 4 10 10 C 1.52104 * 115.43659 * 5.20128 * 8 6 4 11 11 C 1.51713 * 112.45961 * 270.30304 * 10 8 6 12 12 N 1.45304 * 112.00256 * 41.33940 * 11 10 8 13 13 C 1.34779 * 118.82042 * 124.35510 * 12 11 10 14 14 O 1.21681 * 119.99600 * 354.20051 * 13 12 11 15 15 C 1.46377 * 120.00003 * 174.19835 * 13 12 11 16 16 H 1.07999 * 119.99943 * 6.83646 * 15 13 12 17 17 C 1.40043 * 119.99708 * 186.83355 * 15 13 12 18 18 N 1.30677 * 120.00196 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00004 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47351 * 90.00063 * 19 17 15 21 21 H 1.48498 * 109.47406 * 210.00051 * 19 17 15 22 22 H 1.48499 * 109.47238 * 330.00207 * 19 17 15 23 23 C 1.45522 * 122.36447 * 304.08374 * 12 11 10 24 24 C 1.51805 * 111.27922 * 39.90075 * 23 12 11 25 25 H 1.08997 * 114.57869 * 202.30021 * 24 23 12 26 26 H 1.08992 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47154 * 300.00141 * 1 2 3 28 28 H 1.08998 * 109.47079 * 59.99926 * 1 2 3 29 29 H 1.08996 * 109.47154 * 239.99859 * 2 1 3 30 30 H 1.09003 * 109.46980 * 119.99613 * 2 1 3 31 31 H 1.09002 * 108.88638 * 31.07107 * 10 8 6 32 32 H 1.09004 * 108.88310 * 149.62990 * 10 8 6 33 33 H 1.09003 * 108.97426 * 280.69143 * 11 10 8 34 34 H 1.09002 * 108.97543 * 161.99455 * 11 10 8 35 35 H 0.97000 * 119.99692 * 180.02562 * 18 17 15 36 36 H 1.08995 * 109.12209 * 160.36803 * 23 12 11 37 37 H 1.09002 * 109.11735 * 279.50116 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 4.0545 3.3916 -0.9818 8 6 4.9411 3.2599 1.0709 9 1 5.7486 3.9326 0.7819 10 6 5.3559 2.0910 1.9513 11 6 4.4740 1.9473 3.1774 12 7 3.0708 2.1611 2.8667 13 6 2.1818 1.1977 3.1801 14 8 2.5702 0.1300 3.6159 15 6 0.7493 1.4357 2.9962 16 1 0.4100 2.3373 2.5080 17 6 -0.1812 0.4943 3.4534 18 7 0.2293 -0.5964 4.0445 19 14 -2.0094 0.7984 3.2194 20 1 -2.4437 0.2279 1.9190 21 1 -2.7642 0.1494 4.3214 22 1 -2.2738 2.2596 3.2319 23 6 2.5898 3.3804 2.2345 24 6 3.5451 3.8545 1.1541 25 1 3.4663 4.9144 0.9125 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.3006 1.1723 1.3673 32 1 6.3859 2.2412 2.2749 33 1 4.7862 2.6757 3.9259 34 1 4.5976 0.9450 3.5874 35 1 -0.4153 -1.2486 4.3608 36 1 1.6132 3.1905 1.7893 37 1 2.4920 4.1597 2.9902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928117290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:52 Heat of formation + Delta-G solvation = -109.661515 kcal Electronic energy + Delta-G solvation = -22523.190147 eV Core-core repulsion = 19265.898092 eV Total energy + Delta-G solvation = -3257.292054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08819 -40.15081 -38.62837 -37.35403 -35.09897 -34.47871 -32.83962 -32.37241 -28.48955 -27.77156 -25.81332 -24.73196 -23.43462 -21.84301 -21.12211 -19.61521 -18.51513 -18.40630 -17.78118 -17.52655 -16.99009 -16.33116 -16.09320 -15.97502 -15.38416 -14.90274 -14.50037 -14.43328 -14.06708 -13.72601 -13.61909 -13.37744 -13.18486 -13.04050 -12.92096 -12.54273 -12.48588 -12.28280 -12.18024 -12.01373 -11.79765 -11.37220 -11.26003 -10.92176 -10.85244 -10.66350 -9.69310 -9.01812 -8.20961 -6.69719 1.31036 1.39716 1.41467 1.54411 1.83735 2.25367 2.53073 2.63124 2.95302 3.55458 3.66248 3.77383 3.81978 4.00487 4.13072 4.19769 4.27750 4.30071 4.40707 4.43248 4.69118 4.84296 4.85749 4.87671 4.96956 5.01538 5.04095 5.09981 5.13838 5.30199 5.42476 5.47008 5.74734 5.90196 6.27867 6.50807 6.89188 6.97898 7.50235 8.57293 8.76478 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.009273 C = 0.008191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.199939 B = 3018.769635 C = 3417.547684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 O -0.339 6.339 4 C 0.489 3.511 5 O -0.548 6.548 6 C -0.170 4.170 7 H 0.179 0.821 8 C -0.102 4.102 9 H 0.159 0.841 10 C -0.130 4.130 11 C 0.121 3.879 12 N -0.642 5.642 13 C 0.544 3.456 14 O -0.637 6.637 15 C -0.536 4.536 16 H 0.090 0.910 17 C 0.045 3.955 18 N -0.822 5.822 19 Si 0.959 3.041 20 H -0.247 1.247 21 H -0.283 1.283 22 H -0.246 1.246 23 C 0.138 3.862 24 C -0.119 4.119 25 H 0.169 0.831 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 11.883 -9.738 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 O -0.254 6.254 4 C 0.334 3.666 5 O -0.439 6.439 6 C -0.188 4.188 7 H 0.196 0.804 8 C -0.120 4.120 9 H 0.177 0.823 10 C -0.168 4.168 11 C -0.004 4.004 12 N -0.378 5.378 13 C 0.351 3.649 14 O -0.524 6.524 15 C -0.572 4.572 16 H 0.108 0.892 17 C -0.170 4.170 18 N -0.452 5.452 19 Si 0.779 3.221 20 H -0.171 1.171 21 H -0.209 1.209 22 H -0.169 1.169 23 C 0.015 3.985 24 C -0.137 4.137 25 H 0.186 0.814 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.493 10.863 -9.422 14.594 hybrid contribution -0.534 -1.003 0.412 1.208 sum 1.959 9.860 -9.010 13.499 Atomic orbital electron populations 1.21865 0.91251 1.03162 1.04158 1.22693 0.96743 0.80031 0.99481 1.86466 1.24190 1.32012 1.82764 1.23362 0.80608 0.92239 0.70349 1.90521 1.61188 1.44753 1.47458 1.21878 1.07012 0.89981 0.99945 0.80370 1.21973 0.94063 0.99395 0.96583 0.82338 1.21349 1.00245 0.98621 0.96620 1.20428 0.82965 1.00120 0.96854 1.47287 1.06001 1.19473 1.65066 1.18690 0.87617 0.81725 0.76854 1.90548 1.81079 1.27899 1.52908 1.21202 0.88842 1.07054 1.40128 0.89236 1.26678 1.04998 0.93275 0.92070 1.70208 1.36919 1.08428 1.29667 0.85628 0.76762 0.80451 0.79226 1.17101 1.20881 1.16883 1.20616 0.97739 0.86222 0.93913 1.22450 0.95952 1.00246 0.95050 0.81385 0.90462 0.91444 0.89550 0.91798 0.95913 0.92265 0.88441 0.92439 0.94391 0.92109 0.89432 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.29 71.98 0.74 -4.66 16 2 C 0.08 3.60 6.19 71.98 0.45 4.04 16 3 O -0.34 -13.85 9.26 -51.41 -0.48 -14.32 16 4 C 0.49 19.32 5.45 71.23 0.39 19.71 16 5 O -0.55 -25.63 14.17 21.96 0.31 -25.32 16 6 C -0.17 -4.62 6.20 -12.36 -0.08 -4.70 16 7 H 0.18 3.28 8.14 -2.39 -0.02 3.26 16 8 C -0.10 -2.56 6.11 -11.96 -0.07 -2.63 16 9 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 10 C -0.13 -4.44 5.48 29.88 0.16 -4.27 16 11 C 0.12 5.11 6.31 86.18 0.54 5.66 16 12 N -0.64 -29.36 2.01 -837.14 -1.68 -31.04 16 13 C 0.54 31.09 7.26 86.36 0.63 31.72 16 14 O -0.64 -43.38 14.25 -4.29 -0.06 -43.44 16 15 C -0.54 -28.57 7.61 24.83 0.19 -28.38 16 16 H 0.09 4.33 5.77 -2.91 -0.02 4.32 16 17 C 0.04 2.39 4.89 85.30 0.42 2.81 16 18 N -0.82 -49.35 11.85 21.83 0.26 -49.09 16 19 Si 0.96 38.94 27.95 68.60 1.92 40.85 16 20 H -0.25 -9.17 7.07 99.48 0.70 -8.47 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 23 C 0.14 4.81 5.32 86.17 0.46 5.27 16 24 C -0.12 -2.92 6.08 -11.82 -0.07 -2.99 16 25 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.07 2.78 4.24 -2.39 -0.01 2.77 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 2.45 8.13 -2.39 -0.02 2.43 16 30 H 0.02 1.22 8.02 -2.39 -0.02 1.20 16 31 H 0.06 2.52 5.04 -2.39 -0.01 2.51 16 32 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.96 6.73 -2.39 -0.02 1.94 16 35 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 36 H 0.09 3.32 5.07 -2.39 -0.01 3.31 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -80.92 294.39 5.11 -75.81 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 1.09 Total: 24.97 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 3.75 Total: 21.57 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.43 Total: -80.13 kcal Atomic # 8 Polarization: -82.86 SS G_CDS: -0.23 Total: -83.08 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.92 Total: 40.85 kcal Total: -80.92 5.11 -75.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928117290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.848 kcal (2) G-P(sol) polarization free energy of solvation -80.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds