Wall clock time and date at job start Mon Mar 30 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20823 * 120.00101 * 2 1 4 4 O 1.34235 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.45198 * 116.99910 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47069 * 179.97438 * 5 4 2 7 7 C 1.34512 * 125.78762 * 89.99380 * 6 5 4 8 8 C 1.41385 * 106.83926 * 179.76997 * 7 6 5 9 9 C 1.34515 * 106.83992 * 0.23220 * 8 7 6 10 10 C 1.50704 * 125.79099 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.46908 * 89.99749 * 10 9 8 12 12 C 1.46901 * 111.00206 * 66.04839 * 11 10 9 13 13 C 1.46904 * 110.99779 * 190.00174 * 11 10 9 14 14 C 1.50699 * 109.46891 * 170.00302 * 13 11 10 15 15 H 1.08003 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99603 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00488 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99795 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46993 * 60.00175 * 18 16 14 20 20 H 1.48497 * 109.47287 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47456 * 300.00202 * 18 16 14 22 22 O 1.34305 * 125.78789 * 270.15593 * 6 5 4 23 23 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46848 * 299.99676 * 1 2 3 25 25 H 1.08997 * 109.46851 * 59.99868 * 1 2 3 26 26 H 1.08999 * 109.47239 * 59.99419 * 5 4 2 27 27 H 1.09008 * 109.46718 * 299.99608 * 5 4 2 28 28 H 1.08002 * 126.58498 * 0.04167 * 7 6 5 29 29 H 1.08002 * 126.58069 * 180.26215 * 8 7 6 30 30 H 1.08999 * 109.46975 * 209.99542 * 10 9 8 31 31 H 1.08996 * 109.46842 * 329.99986 * 10 9 8 32 32 H 1.08998 * 109.47094 * 59.99891 * 12 11 10 33 33 H 1.08994 * 109.47407 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46695 * 299.99954 * 12 11 10 35 35 H 1.09006 * 109.46867 * 289.99826 * 13 11 10 36 36 H 1.09000 * 109.47128 * 49.99970 * 13 11 10 37 37 H 0.97004 * 120.00638 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 0.0001 6 6 4.2041 -2.4792 0.0000 7 6 4.5051 -3.2059 -1.0912 8 6 5.0210 -4.4396 -0.6321 9 6 4.9997 -4.3950 0.7121 10 6 5.4571 -5.4927 1.6378 11 7 6.8834 -5.3147 1.9410 12 6 7.1077 -4.0875 2.7167 13 6 7.4226 -6.4871 2.6431 14 6 8.9239 -6.3804 2.7194 15 1 9.4272 -5.5272 2.2891 16 6 9.6549 -7.3725 3.3378 17 7 9.0421 -8.4116 3.8614 18 14 11.5159 -7.2406 3.4318 19 1 11.8880 -6.0072 4.1707 20 1 12.0609 -8.4256 4.1416 21 1 12.0782 -7.1836 2.0585 22 8 4.5011 -3.2063 1.0894 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 3.9638 -0.5549 0.8905 27 1 3.9644 -0.5538 -0.8895 28 1 4.3810 -2.9032 -2.1205 29 1 5.3665 -5.2602 -1.2435 30 1 4.8812 -5.4518 2.5623 31 1 5.3056 -6.4594 1.1577 32 1 6.5554 -4.1445 3.6546 33 1 8.1716 -3.9804 2.9279 34 1 6.7623 -3.2272 2.1433 35 1 7.0096 -6.5287 3.6510 36 1 7.1497 -7.3925 2.1010 37 1 9.5564 -9.1094 4.2967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141779891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:34 Heat of formation + Delta-G solvation = -66.365914 kcal Electronic energy + Delta-G solvation = -19549.257362 eV Core-core repulsion = 16293.842746 eV Total energy + Delta-G solvation = -3255.414616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.48516 -40.62668 -36.91610 -36.58718 -32.99339 -32.73332 -31.67586 -30.41600 -28.22216 -27.03081 -25.26321 -23.35135 -21.69714 -21.51965 -20.64063 -19.90369 -17.97514 -17.27705 -16.80774 -16.47644 -15.98911 -15.59908 -14.82631 -14.45505 -14.34284 -14.03178 -13.85741 -13.32087 -13.10071 -13.02096 -12.68172 -12.63022 -12.18649 -12.05454 -11.86364 -11.51793 -11.11831 -11.00488 -10.92100 -10.87945 -10.74321 -10.50986 -9.96604 -9.73708 -9.31312 -8.48373 -8.29176 -7.37658 -6.06418 -4.08036 1.50275 1.86991 2.43992 2.85987 3.10149 3.32401 3.36260 3.39577 4.38840 4.41873 4.55826 4.78342 4.80290 4.90212 5.01465 5.07914 5.13852 5.18824 5.29904 5.33440 5.69598 5.87860 5.90645 6.09394 6.13338 6.14465 6.21653 6.30759 6.65316 6.72170 7.15882 7.24791 7.32891 7.41284 7.72504 7.97533 8.09647 8.44875 8.98727 9.56199 11.04431 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.045358 B = 0.003069 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.159516 B = 9121.862162 C = 9233.125430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.461 3.539 3 O -0.517 6.517 4 O -0.353 6.353 5 C 0.156 3.844 6 C -0.049 4.049 7 C -0.166 4.166 8 C -0.207 4.207 9 C 0.037 3.963 10 C 0.126 3.874 11 N -0.535 5.535 12 C 0.036 3.964 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 O -0.170 6.170 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.147 0.853 29 H 0.152 0.848 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.014 0.986 33 H 0.078 0.922 34 H 0.045 0.955 35 H -0.005 1.005 36 H 0.033 0.967 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 12.701 -8.455 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.305 3.695 3 O -0.405 6.405 4 O -0.270 6.270 5 C 0.083 3.917 6 C -0.099 4.099 7 C -0.186 4.186 8 C -0.227 4.227 9 C -0.014 4.014 10 C -0.002 4.002 11 N -0.260 5.260 12 C -0.112 4.112 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 O -0.066 6.066 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.013 0.987 36 H 0.051 0.949 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.518 12.953 -8.486 21.922 hybrid contribution 0.742 -0.100 0.663 1.000 sum -14.776 12.854 -7.823 21.089 Atomic orbital electron populations 1.21602 0.86930 1.05961 1.05840 1.23884 0.92183 0.81423 0.72012 1.90706 1.70881 1.33130 1.45808 1.86619 1.21799 1.35063 1.83546 1.21030 0.76247 0.89976 1.04475 1.21439 1.08345 0.95078 0.85055 1.21611 1.03527 0.94512 0.98935 1.21559 1.07386 0.99775 0.93989 1.22786 0.98461 0.85110 0.95085 1.20658 0.91240 0.92568 0.95714 1.62210 1.10296 1.05528 1.48006 1.22251 1.02533 0.91807 0.94618 1.19780 0.95370 0.86486 0.91534 1.21091 0.90967 1.06646 1.36051 0.91811 1.24981 0.98901 0.95220 0.95441 1.69939 1.35843 1.09991 1.38038 0.86533 0.85064 0.77375 0.78279 1.20261 1.21321 1.20104 1.83978 1.63297 1.24722 1.34616 0.88911 0.87638 0.87654 0.89444 0.87991 0.83489 0.83027 0.93933 0.87884 0.96754 0.90379 0.93653 0.98743 0.94882 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.42 36.01 0.38 -0.37 16 2 C 0.46 4.56 8.07 36.01 0.29 4.85 16 3 O -0.52 -6.68 16.85 -18.75 -0.32 -6.99 16 4 O -0.35 -3.99 10.20 -39.27 -0.40 -4.39 16 5 C 0.16 1.80 5.99 36.01 0.22 2.02 16 6 C -0.05 -0.70 6.96 -35.62 -0.25 -0.95 16 7 C -0.17 -2.24 10.81 -39.70 -0.43 -2.67 16 8 C -0.21 -3.15 10.81 -39.70 -0.43 -3.57 16 9 C 0.04 0.62 5.89 -35.62 -0.21 0.41 16 10 C 0.13 2.28 5.50 -4.97 -0.03 2.26 16 11 N -0.54 -11.63 4.74 -245.82 -1.17 -12.79 16 12 C 0.04 0.74 9.18 60.07 0.55 1.29 16 13 C 0.19 4.94 4.72 -4.97 -0.02 4.91 16 14 C -0.51 -14.18 8.46 -34.44 -0.29 -14.47 16 15 H 0.06 1.77 7.12 -52.48 -0.37 1.39 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.17 -2.81 10.05 5.70 0.06 -2.75 16 23 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.10 1.00 8.13 -51.92 -0.42 0.57 16 28 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.10 1.73 7.93 -51.93 -0.41 1.32 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 34 H 0.04 0.85 6.81 -51.93 -0.35 0.50 16 35 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 36 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -32.40 324.30 -6.81 -39.20 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.26 Total: -3.20 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.32 Total: -4.81 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.43 Total: -38.44 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.66 Total: -14.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.40 -6.81 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141779891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.162 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds