Wall clock time and date at job start Mon Mar 30 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20823 * 120.00101 * 2 1 4 4 O 1.34235 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.45198 * 116.99910 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47069 * 179.97438 * 5 4 2 7 7 C 1.34512 * 125.78762 * 89.99380 * 6 5 4 8 8 C 1.41385 * 106.83926 * 179.76997 * 7 6 5 9 9 C 1.34515 * 106.83992 * 0.23220 * 8 7 6 10 10 C 1.50704 * 125.79099 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.46908 * 89.99749 * 10 9 8 12 12 C 1.46901 * 111.00206 * 66.04839 * 11 10 9 13 13 C 1.46904 * 110.99779 * 190.00174 * 11 10 9 14 14 C 1.50699 * 109.46891 * 170.00302 * 13 11 10 15 15 H 1.08003 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99603 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00488 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99795 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46993 * 60.00175 * 18 16 14 20 20 H 1.48497 * 109.47287 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47456 * 300.00202 * 18 16 14 22 22 O 1.34305 * 125.78789 * 270.15593 * 6 5 4 23 23 H 1.08997 * 109.46941 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46848 * 299.99676 * 1 2 3 25 25 H 1.08997 * 109.46851 * 59.99868 * 1 2 3 26 26 H 1.08999 * 109.47239 * 59.99419 * 5 4 2 27 27 H 1.09008 * 109.46718 * 299.99608 * 5 4 2 28 28 H 1.08002 * 126.58498 * 0.04167 * 7 6 5 29 29 H 1.08002 * 126.58069 * 180.26215 * 8 7 6 30 30 H 1.08999 * 109.46975 * 209.99542 * 10 9 8 31 31 H 1.08996 * 109.46842 * 329.99986 * 10 9 8 32 32 H 1.08998 * 109.47094 * 59.99891 * 12 11 10 33 33 H 1.08994 * 109.47407 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46695 * 299.99954 * 12 11 10 35 35 H 1.09006 * 109.46867 * 289.99826 * 13 11 10 36 36 H 1.09000 * 109.47128 * 49.99970 * 13 11 10 37 37 H 0.97004 * 120.00638 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 0.0001 6 6 4.2041 -2.4792 0.0000 7 6 4.5051 -3.2059 -1.0912 8 6 5.0210 -4.4396 -0.6321 9 6 4.9997 -4.3950 0.7121 10 6 5.4571 -5.4927 1.6378 11 7 6.8834 -5.3147 1.9410 12 6 7.1077 -4.0875 2.7167 13 6 7.4226 -6.4871 2.6431 14 6 8.9239 -6.3804 2.7194 15 1 9.4272 -5.5272 2.2891 16 6 9.6549 -7.3725 3.3378 17 7 9.0421 -8.4116 3.8614 18 14 11.5159 -7.2406 3.4318 19 1 11.8880 -6.0072 4.1707 20 1 12.0609 -8.4256 4.1416 21 1 12.0782 -7.1836 2.0585 22 8 4.5011 -3.2063 1.0894 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 3.9638 -0.5549 0.8905 27 1 3.9644 -0.5538 -0.8895 28 1 4.3810 -2.9032 -2.1205 29 1 5.3665 -5.2602 -1.2435 30 1 4.8812 -5.4518 2.5623 31 1 5.3056 -6.4594 1.1577 32 1 6.5554 -4.1445 3.6546 33 1 8.1716 -3.9804 2.9279 34 1 6.7623 -3.2272 2.1433 35 1 7.0096 -6.5287 3.6510 36 1 7.1497 -7.3925 2.1010 37 1 9.5564 -9.1094 4.2967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141779891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:34 Heat of formation + Delta-G solvation = -86.923948 kcal Electronic energy + Delta-G solvation = -19550.148825 eV Core-core repulsion = 16293.842746 eV Total energy + Delta-G solvation = -3256.306079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.66112 -41.45509 -38.39150 -37.70663 -34.79451 -34.11880 -32.81337 -31.18471 -29.66130 -28.76885 -26.78474 -24.93906 -22.88719 -22.46452 -22.19668 -21.14962 -18.80440 -18.64898 -18.11885 -17.62580 -17.32463 -16.85050 -16.58164 -15.98886 -15.65954 -15.50027 -14.88694 -14.68310 -14.04101 -13.96107 -13.79365 -13.65271 -13.53685 -13.23815 -13.19085 -13.04590 -12.81048 -12.65200 -12.60737 -12.34917 -11.96945 -11.87938 -11.71168 -11.38109 -10.87780 -10.61973 -9.51955 -9.13718 -8.21200 -6.31114 0.41841 1.12335 1.37544 1.42566 1.44828 1.53009 1.75353 2.15725 2.40859 3.11584 3.31867 3.49153 3.74876 3.79543 3.98291 4.06954 4.18564 4.34748 4.41955 4.51316 4.53117 4.57842 4.63907 4.77298 4.94034 4.95554 5.01631 5.05941 5.13985 5.22970 5.38685 5.53558 5.62082 5.98533 6.11400 6.22308 6.49132 6.64502 6.82928 7.38152 8.89573 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.045358 B = 0.003069 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.159516 B = 9121.862162 C = 9233.125430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.459 3.541 3 O -0.552 6.552 4 O -0.361 6.361 5 C 0.155 3.845 6 C -0.050 4.050 7 C -0.165 4.165 8 C -0.202 4.202 9 C 0.008 3.992 10 C 0.130 3.870 11 N -0.543 5.543 12 C 0.044 3.956 13 C 0.207 3.793 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.268 1.268 22 O -0.188 6.188 23 H 0.105 0.895 24 H 0.120 0.880 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.179 0.821 29 H 0.163 0.837 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.062 0.938 35 H -0.031 1.031 36 H 0.016 0.984 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.454 13.858 -9.742 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.306 3.694 3 O -0.443 6.443 4 O -0.278 6.278 5 C 0.082 3.918 6 C -0.099 4.099 7 C -0.184 4.184 8 C -0.222 4.222 9 C -0.043 4.043 10 C 0.002 3.998 11 N -0.267 5.267 12 C -0.104 4.104 13 C 0.081 3.919 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.193 1.193 22 O -0.085 6.085 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.143 0.857 26 H 0.102 0.898 27 H 0.140 0.860 28 H 0.197 0.803 29 H 0.181 0.819 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.080 0.920 35 H -0.013 1.013 36 H 0.034 0.966 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.005 14.117 -9.783 23.477 hybrid contribution 0.769 -0.393 1.022 1.338 sum -15.236 13.725 -8.761 22.299 Atomic orbital electron populations 1.21769 0.83048 1.07372 1.07432 1.24861 0.93714 0.80374 0.70490 1.90693 1.71851 1.34095 1.47618 1.86626 1.21444 1.36087 1.83692 1.21103 0.76817 0.88545 1.05345 1.22001 1.07608 0.95645 0.84671 1.21951 1.02676 0.93466 1.00309 1.21848 1.06129 1.00710 0.93466 1.22467 1.00971 0.85494 0.95336 1.20588 0.88948 0.93990 0.96268 1.62103 1.12944 1.04434 1.47251 1.22164 1.01604 0.91829 0.94819 1.19443 0.94707 0.87522 0.90202 1.21400 0.92204 1.06705 1.36159 0.92002 1.25868 1.03903 0.94744 0.94878 1.70056 1.37765 1.10731 1.38702 0.85451 0.79012 0.77654 0.78591 1.19428 1.20745 1.19314 1.83944 1.63785 1.24878 1.35921 0.87618 0.86159 0.85662 0.89760 0.86003 0.80346 0.81922 0.93967 0.87123 0.96790 0.91812 0.91970 1.01333 0.96594 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 10.42 71.24 0.74 -0.30 16 2 C 0.46 8.30 8.07 71.24 0.57 8.87 16 3 O -0.55 -13.64 16.85 21.97 0.37 -13.27 16 4 O -0.36 -7.57 10.20 -51.46 -0.52 -8.09 16 5 C 0.15 3.35 5.99 71.24 0.43 3.77 16 6 C -0.05 -1.33 6.96 24.83 0.17 -1.15 16 7 C -0.17 -4.05 10.81 22.19 0.24 -3.81 16 8 C -0.20 -5.82 10.81 22.19 0.24 -5.58 16 9 C 0.01 0.26 5.89 24.83 0.15 0.41 16 10 C 0.13 4.74 5.50 85.56 0.47 5.21 16 11 N -0.54 -23.90 4.74 -931.64 -4.42 -28.32 16 12 C 0.04 1.82 9.18 127.69 1.17 2.99 16 13 C 0.21 10.91 4.72 85.56 0.40 11.32 16 14 C -0.53 -29.73 8.46 25.60 0.22 -29.51 16 15 H 0.06 3.45 7.12 -2.91 -0.02 3.42 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 18 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 O -0.19 -6.10 10.05 -2.52 -0.03 -6.13 16 23 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 27 H 0.12 2.13 8.13 -2.38 -0.02 2.11 16 28 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.11 3.78 7.93 -2.39 -0.02 3.76 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 2.76 6.76 -2.39 -0.02 2.75 16 34 H 0.06 2.32 6.81 -2.39 -0.02 2.31 16 35 H -0.03 -1.76 8.12 -2.38 -0.02 -1.78 16 36 H 0.02 0.88 7.93 -2.39 -0.02 0.87 16 37 H 0.27 14.88 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -69.76 324.30 4.04 -65.73 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.06 Total: 6.26 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.27 Total: -7.08 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -4.14 Total: -83.50 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.18 Total: -27.49 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.76 4.04 -65.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141779891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.197 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds