Wall clock time and date at job start Mon Mar 30 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47460 * 2 1 4 4 C 1.34232 * 117.00426 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00087 * 179.97438 * 4 3 2 7 7 C 1.52541 * 119.27341 * 196.14569 * 6 4 3 8 8 C 1.53116 * 60.61064 * 110.77399 * 7 6 4 9 9 H 1.09005 * 120.25123 * 247.95029 * 8 7 6 10 10 C 1.54707 * 117.55279 * 91.92684 * 8 7 6 11 11 C 1.54949 * 102.69975 * 319.11902 * 10 8 7 12 12 N 1.47386 * 117.18447 * 40.08674 * 6 4 3 13 13 C 1.34771 * 126.94351 * 15.75108 * 12 6 4 14 14 O 1.21287 * 119.99799 * 355.09560 * 13 12 6 15 15 C 1.50699 * 120.00168 * 175.10234 * 13 12 6 16 16 C 1.50704 * 109.47240 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99739 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99842 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46998 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47369 * 300.00132 * 20 18 16 23 23 H 1.48506 * 109.47175 * 60.00424 * 20 18 16 24 24 H 1.09000 * 109.46891 * 300.00055 * 1 2 3 25 25 H 1.09002 * 109.47385 * 59.99861 * 1 2 3 26 26 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46891 * 239.99945 * 2 1 3 28 28 H 1.09002 * 109.47385 * 120.00139 * 2 1 3 29 29 H 1.09004 * 117.45708 * 3.09532 * 7 6 4 30 30 H 1.09002 * 117.35015 * 218.49860 * 7 6 4 31 31 H 1.09008 * 110.76425 * 200.81803 * 10 8 7 32 32 H 1.08993 * 110.92541 * 77.49916 * 10 8 7 33 33 H 1.08999 * 110.66415 * 204.00893 * 11 10 8 34 34 H 1.09002 * 110.80481 * 80.96026 * 11 10 8 35 35 H 1.08996 * 109.47095 * 59.99346 * 15 13 12 36 36 H 1.08999 * 109.46723 * 299.99684 * 15 13 12 37 37 H 0.96999 * 120.00485 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.3868 3.1379 -0.3718 8 6 4.2961 3.6377 -1.3231 9 1 4.1554 3.1638 -2.2946 10 6 3.8149 5.0985 -1.1557 11 6 3.7477 5.2607 0.3838 12 7 3.2515 3.9431 0.8430 13 6 2.3706 3.7105 1.8361 14 8 1.9868 2.5807 2.0539 15 6 1.8624 4.8540 2.6758 16 6 0.8967 4.3295 3.7072 17 1 0.6731 3.2738 3.7499 18 6 0.2988 5.1975 4.5960 19 7 0.5709 6.4831 4.5435 20 14 -0.8986 4.5475 5.8739 21 1 -1.3993 5.6743 6.7014 22 1 -2.0414 3.8891 5.1917 23 1 -0.2074 3.5625 6.7442 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.9535 2.2576 -0.6751 30 1 5.9470 3.8867 0.1883 31 1 2.8297 5.2343 -1.6020 32 1 4.5323 5.7965 -1.5870 33 1 3.0488 6.0513 0.6571 34 1 4.7364 5.4640 0.7952 35 1 1.3543 5.5762 2.0369 36 1 2.7011 5.3382 3.1760 37 1 1.1924 6.8207 3.8798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:28 Heat of formation + Delta-G solvation = -86.035949 kcal Electronic energy + Delta-G solvation = -21220.002585 eV Core-core repulsion = 17963.735012 eV Total energy + Delta-G solvation = -3256.267573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00755 -39.32931 -37.68719 -36.23623 -33.35328 -32.68745 -31.51865 -30.19736 -28.50260 -25.04212 -24.22435 -23.44101 -22.31626 -21.09780 -20.10221 -18.99232 -17.25089 -16.76304 -16.65742 -16.29280 -15.61227 -15.16342 -14.62291 -14.26386 -13.77715 -13.72642 -13.49497 -13.13768 -12.86265 -12.65433 -12.55913 -12.04799 -11.97449 -11.69466 -11.39165 -11.35484 -11.21891 -10.82132 -10.73448 -10.65315 -10.53927 -10.21304 -10.06301 -10.02243 -8.93336 -8.64049 -8.41183 -8.20166 -6.41059 -4.10091 2.14639 2.82852 3.27532 3.33813 3.47177 3.48853 3.67877 3.73657 4.30199 4.47582 4.54257 4.74785 4.83463 4.93457 5.12330 5.20659 5.28844 5.35780 5.43606 5.49058 5.54003 5.61505 5.74354 5.81526 5.85069 5.90677 5.99338 6.02609 6.23986 6.54619 6.72315 6.77791 6.99537 7.79050 8.03221 8.14436 8.52887 8.85095 9.02498 9.59297 10.98802 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.006855 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.999004 B = 4083.359622 C = 5253.271349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 O -0.319 6.319 4 C 0.521 3.479 5 O -0.519 6.519 6 C 0.074 3.926 7 C -0.123 4.123 8 C -0.153 4.153 9 H 0.125 0.875 10 C -0.104 4.104 11 C 0.098 3.902 12 N -0.598 5.598 13 C 0.536 3.464 14 O -0.511 6.511 15 C 0.005 3.995 16 C -0.588 4.588 17 H 0.069 0.931 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 1.074 2.926 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 -4.167 -13.589 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 O -0.233 6.233 4 C 0.364 3.636 5 O -0.408 6.408 6 C -0.015 4.015 7 C -0.161 4.161 8 C -0.173 4.173 9 H 0.143 0.857 10 C -0.142 4.142 11 C -0.025 4.025 12 N -0.336 5.336 13 C 0.329 3.671 14 O -0.384 6.384 15 C -0.035 4.035 16 C -0.627 4.627 17 H 0.088 0.912 18 C -0.187 4.187 19 N -0.550 5.550 20 Si 0.902 3.098 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.213 1.213 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.332 -4.678 -12.060 13.991 hybrid contribution 1.161 -0.584 -1.304 1.841 sum 6.493 -5.262 -13.363 15.762 Atomic orbital electron populations 1.21760 0.92690 1.02319 1.03950 1.22923 0.95540 0.80447 1.01616 1.86617 1.22880 1.31541 1.82291 1.21641 0.81257 0.89220 0.71472 1.90610 1.61092 1.41970 1.47104 1.20748 0.96264 0.87312 0.97163 1.23380 0.89705 1.03463 0.99581 1.23906 1.02518 0.96677 0.94160 0.85742 1.22342 1.02216 0.93648 0.96030 1.22551 1.00319 0.86214 0.93393 1.48806 1.44342 1.04833 1.35611 1.21659 0.75548 0.92648 0.77294 1.90589 1.55979 1.24764 1.67020 1.19311 0.97489 0.92020 0.94640 1.21960 1.26907 0.97283 1.16514 0.91250 1.25895 0.99101 0.94285 0.99443 1.70835 1.34536 1.13562 1.36087 0.83462 0.75650 0.75163 0.75555 1.20788 1.21309 1.21341 0.90659 0.91947 0.90688 0.92144 0.91406 0.86324 0.87183 0.89663 0.89301 0.88695 0.90918 0.94427 0.94430 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.29 37.16 0.38 -1.68 16 2 C 0.07 1.11 6.19 37.16 0.23 1.34 16 3 O -0.32 -6.30 7.84 -46.99 -0.37 -6.67 16 4 C 0.52 10.07 6.62 36.00 0.24 10.31 16 5 O -0.52 -10.41 16.32 -18.75 -0.31 -10.72 16 6 C 0.07 1.23 3.39 -132.08 -0.45 0.79 16 7 C -0.12 -1.52 9.40 -26.91 -0.25 -1.77 16 8 C -0.15 -1.81 7.08 -89.01 -0.63 -2.44 16 9 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 10 C -0.10 -1.10 7.02 -24.80 -0.17 -1.27 16 11 C 0.10 1.33 6.44 -2.14 -0.01 1.31 16 12 N -0.60 -11.09 3.28 -156.56 -0.51 -11.61 16 13 C 0.54 12.67 7.77 -10.99 -0.09 12.58 16 14 O -0.51 -13.55 12.51 -17.79 -0.22 -13.77 16 15 C 0.00 0.12 3.79 -29.03 -0.11 0.01 16 16 C -0.59 -17.20 8.92 -34.44 -0.31 -17.50 16 17 H 0.07 2.13 6.75 -52.49 -0.35 1.78 16 18 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 19 N -0.91 -27.24 13.65 55.43 0.76 -26.49 16 20 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 28 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 29 H 0.12 1.39 7.91 -51.93 -0.41 0.98 16 30 H 0.11 1.19 7.14 -51.93 -0.37 0.82 16 31 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.30 7.22 -51.93 -0.37 0.92 16 34 H 0.07 0.85 7.29 -51.93 -0.38 0.47 16 35 H 0.04 0.94 7.65 -51.93 -0.40 0.55 16 36 H 0.04 0.95 8.01 -51.93 -0.42 0.54 16 37 H 0.27 7.69 7.22 -40.82 -0.29 7.40 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -35.35 311.52 -7.49 -42.84 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.17 Total: -1.08 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.27 Total: 2.03 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.24 Total: -38.09 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.90 Total: -31.16 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.35 -7.49 -42.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.199 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds