Wall clock time and date at job start Mon Mar 30 2020 00:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47460 * 2 1 4 4 C 1.34232 * 117.00426 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00087 * 179.97438 * 4 3 2 7 7 C 1.52541 * 119.27341 * 196.14569 * 6 4 3 8 8 C 1.53116 * 60.61064 * 110.77399 * 7 6 4 9 9 H 1.09005 * 120.25123 * 247.95029 * 8 7 6 10 10 C 1.54707 * 117.55279 * 91.92684 * 8 7 6 11 11 C 1.54949 * 102.69975 * 319.11902 * 10 8 7 12 12 N 1.47386 * 117.18447 * 40.08674 * 6 4 3 13 13 C 1.34771 * 126.94351 * 15.75108 * 12 6 4 14 14 O 1.21287 * 119.99799 * 355.09560 * 13 12 6 15 15 C 1.50699 * 120.00168 * 175.10234 * 13 12 6 16 16 C 1.50704 * 109.47240 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99739 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99842 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99805 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46998 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47369 * 300.00132 * 20 18 16 23 23 H 1.48506 * 109.47175 * 60.00424 * 20 18 16 24 24 H 1.09000 * 109.46891 * 300.00055 * 1 2 3 25 25 H 1.09002 * 109.47385 * 59.99861 * 1 2 3 26 26 H 1.09005 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46891 * 239.99945 * 2 1 3 28 28 H 1.09002 * 109.47385 * 120.00139 * 2 1 3 29 29 H 1.09004 * 117.45708 * 3.09532 * 7 6 4 30 30 H 1.09002 * 117.35015 * 218.49860 * 7 6 4 31 31 H 1.09008 * 110.76425 * 200.81803 * 10 8 7 32 32 H 1.08993 * 110.92541 * 77.49916 * 10 8 7 33 33 H 1.08999 * 110.66415 * 204.00893 * 11 10 8 34 34 H 1.09002 * 110.80481 * 80.96026 * 11 10 8 35 35 H 1.08996 * 109.47095 * 59.99346 * 15 13 12 36 36 H 1.08999 * 109.46723 * 299.99684 * 15 13 12 37 37 H 0.96999 * 120.00485 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.3868 3.1379 -0.3718 8 6 4.2961 3.6377 -1.3231 9 1 4.1554 3.1638 -2.2946 10 6 3.8149 5.0985 -1.1557 11 6 3.7477 5.2607 0.3838 12 7 3.2515 3.9431 0.8430 13 6 2.3706 3.7105 1.8361 14 8 1.9868 2.5807 2.0539 15 6 1.8624 4.8540 2.6758 16 6 0.8967 4.3295 3.7072 17 1 0.6731 3.2738 3.7499 18 6 0.2988 5.1975 4.5960 19 7 0.5709 6.4831 4.5435 20 14 -0.8986 4.5475 5.8739 21 1 -1.3993 5.6743 6.7014 22 1 -2.0414 3.8891 5.1917 23 1 -0.2074 3.5625 6.7442 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.9535 2.2576 -0.6751 30 1 5.9470 3.8867 0.1883 31 1 2.8297 5.2343 -1.6020 32 1 4.5323 5.7965 -1.5870 33 1 3.0488 6.0513 0.6571 34 1 4.7364 5.4640 0.7952 35 1 1.3543 5.5762 2.0369 36 1 2.7011 5.3382 3.1760 37 1 1.1924 6.8207 3.8798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:28 Heat of formation + Delta-G solvation = -108.344343 kcal Electronic energy + Delta-G solvation = -21220.969949 eV Core-core repulsion = 17963.735012 eV Total energy + Delta-G solvation = -3257.234937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30332 -40.73122 -39.32945 -37.66913 -35.51076 -34.10207 -32.74966 -31.31278 -30.50631 -26.37926 -25.74215 -25.02795 -23.64627 -22.53535 -21.19131 -20.40989 -18.85530 -18.74549 -18.23341 -17.64255 -17.01546 -16.57039 -16.12742 -15.66000 -15.54215 -15.14278 -15.05188 -14.37519 -14.25784 -14.04355 -13.78780 -13.68980 -13.29422 -13.07760 -12.94365 -12.86593 -12.58097 -12.53198 -12.16218 -11.98873 -11.93099 -11.81883 -11.56475 -11.20052 -10.97087 -10.61588 -10.58091 -9.56499 -8.72797 -6.42208 0.78624 1.50686 1.57685 1.59335 1.67417 1.79153 1.87796 2.53281 2.55238 3.10912 3.18975 3.39341 3.61365 3.77916 3.89383 3.98087 3.99205 4.09992 4.19905 4.31626 4.53919 4.60095 4.64618 4.68641 4.76904 4.80902 4.93457 4.96020 4.99894 5.04044 5.12789 5.25896 5.38664 5.79152 6.18846 6.35921 6.60922 6.65406 7.23873 7.37135 8.69519 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.006855 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.999004 B = 4083.359622 C = 5253.271349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 O -0.342 6.342 4 C 0.510 3.490 5 O -0.540 6.540 6 C 0.015 3.985 7 C -0.100 4.100 8 C -0.113 4.113 9 H 0.147 0.853 10 C -0.093 4.093 11 C 0.085 3.915 12 N -0.595 5.595 13 C 0.531 3.469 14 O -0.555 6.555 15 C 0.010 3.990 16 C -0.612 4.612 17 H 0.045 0.955 18 C -0.025 4.025 19 N -0.928 5.928 20 Si 1.115 2.885 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.277 1.277 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.526 -3.471 -15.371 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 O -0.256 6.256 4 C 0.355 3.645 5 O -0.431 6.431 6 C -0.073 4.073 7 C -0.138 4.138 8 C -0.132 4.132 9 H 0.164 0.836 10 C -0.130 4.130 11 C -0.036 4.036 12 N -0.332 5.332 13 C 0.322 3.678 14 O -0.432 6.432 15 C -0.029 4.029 16 C -0.650 4.650 17 H 0.063 0.937 18 C -0.224 4.224 19 N -0.565 5.565 20 Si 0.936 3.064 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.203 1.203 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.391 -3.940 -13.903 15.801 hybrid contribution 0.920 -0.793 -0.838 1.476 sum 7.311 -4.733 -14.741 17.121 Atomic orbital electron populations 1.21761 0.91012 1.04246 1.02807 1.23177 0.96958 0.79467 1.01767 1.86619 1.23584 1.33247 1.82196 1.22292 0.80998 0.90448 0.70783 1.90569 1.61259 1.42901 1.48329 1.21233 0.99187 0.86073 1.00822 1.23568 0.87586 1.04099 0.98584 1.24196 0.99647 0.96501 0.92901 0.83554 1.22421 1.03607 0.93613 0.93368 1.22985 1.01088 0.83610 0.95900 1.48509 1.43032 1.07633 1.33983 1.21139 0.76819 0.91283 0.78525 1.90559 1.58066 1.25737 1.68835 1.19099 0.96693 0.92728 0.94370 1.22191 1.28309 0.96326 1.18158 0.93696 1.27220 1.00162 0.94017 1.00986 1.70928 1.35101 1.14044 1.36436 0.82952 0.74346 0.75238 0.73855 1.19731 1.19981 1.20282 0.93805 0.90887 0.87224 0.89848 0.93278 0.85569 0.85144 0.89633 0.84753 0.89357 0.88488 0.94422 0.94671 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 10.29 71.98 0.74 -3.19 16 2 C 0.06 1.98 6.19 71.98 0.45 2.43 16 3 O -0.34 -13.91 7.84 -44.04 -0.35 -14.26 16 4 C 0.51 19.90 6.62 71.23 0.47 20.37 16 5 O -0.54 -21.89 16.32 21.96 0.36 -21.53 16 6 C 0.01 0.47 3.39 2.95 0.01 0.48 16 7 C -0.10 -2.14 9.40 30.48 0.29 -1.85 16 8 C -0.11 -2.23 7.08 -9.75 -0.07 -2.30 16 9 H 0.15 2.32 8.14 -2.38 -0.02 2.30 16 10 C -0.09 -1.54 7.02 31.84 0.22 -1.32 16 11 C 0.09 2.10 6.44 86.74 0.56 2.66 16 12 N -0.60 -21.82 3.28 -767.61 -2.52 -24.34 16 13 C 0.53 25.88 7.77 87.66 0.68 26.57 16 14 O -0.56 -30.93 12.51 19.27 0.24 -30.68 16 15 C 0.01 0.55 3.79 29.10 0.11 0.66 16 16 C -0.61 -36.96 8.92 25.60 0.23 -36.73 16 17 H 0.04 2.89 6.75 -2.91 -0.02 2.87 16 18 C -0.03 -1.49 5.46 84.65 0.46 -1.03 16 19 N -0.93 -55.78 13.65 21.45 0.29 -55.49 16 20 Si 1.11 52.34 29.90 68.60 2.05 54.39 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 28 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 29 H 0.13 2.55 7.91 -2.38 -0.02 2.53 16 30 H 0.13 2.25 7.14 -2.39 -0.02 2.23 16 31 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.29 7.22 -2.39 -0.02 2.28 16 34 H 0.10 1.94 7.29 -2.39 -0.02 1.92 16 35 H 0.04 1.94 7.65 -2.39 -0.02 1.92 16 36 H 0.04 1.83 8.01 -2.39 -0.02 1.81 16 37 H 0.26 15.35 7.22 -92.71 -0.67 14.68 16 Total: -1.00 -80.75 311.52 5.40 -75.35 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.17 Total: 9.82 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.15 Total: 6.74 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.23 Total: -79.82 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: 0.25 Total: -66.48 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -80.75 5.40 -75.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.990 kcal (2) G-P(sol) polarization free energy of solvation -80.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds