Wall clock time and date at job start Mon Mar 30 2020 00:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47114 * 2 1 4 4 C 1.34227 * 117.00143 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00127 * 359.72399 * 4 3 2 6 6 C 1.50700 * 120.00033 * 180.02562 * 4 3 2 7 7 C 1.52871 * 119.00035 * 267.15220 * 6 4 3 8 8 C 1.53125 * 60.43782 * 249.15741 * 7 6 4 9 9 H 1.08996 * 120.25036 * 111.98475 * 8 7 6 10 10 C 1.54708 * 117.54725 * 268.01127 * 8 7 6 11 11 C 1.54949 * 102.70476 * 40.87882 * 10 8 7 12 12 N 1.47385 * 117.18198 * 63.19057 * 6 4 3 13 13 C 1.34778 * 126.94338 * 344.24541 * 12 6 4 14 14 O 1.21280 * 120.00167 * 5.21409 * 13 12 6 15 15 C 1.50697 * 119.99761 * 185.20590 * 13 12 6 16 16 C 1.50702 * 109.47367 * 180.02562 * 15 13 12 17 17 H 1.08008 * 119.99434 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00583 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99462 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46646 * 89.99763 * 20 18 16 22 22 H 1.48500 * 109.46975 * 209.99647 * 20 18 16 23 23 H 1.48496 * 109.47129 * 330.00200 * 20 18 16 24 24 H 1.09000 * 109.47330 * 59.99670 * 1 2 3 25 25 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46688 * 299.99808 * 1 2 3 27 27 H 1.08995 * 109.46773 * 240.00554 * 2 1 3 28 28 H 1.09000 * 109.47330 * 120.00330 * 2 1 3 29 29 H 1.08995 * 117.45238 * 356.77576 * 7 6 4 30 30 H 1.09000 * 117.45281 * 141.54019 * 7 6 4 31 31 H 1.09005 * 110.75886 * 159.18216 * 10 8 7 32 32 H 1.08997 * 110.76146 * 282.57017 * 10 8 7 33 33 H 1.09000 * 110.65962 * 155.99278 * 11 10 8 34 34 H 1.09001 * 110.66149 * 279.10417 * 11 10 8 35 35 H 1.09006 * 109.47301 * 300.00376 * 15 13 12 36 36 H 1.09000 * 109.46967 * 60.00432 * 15 13 12 37 37 H 0.97004 * 119.99571 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 0.0041 6 6 3.9207 2.9374 0.0000 7 6 4.2647 3.5977 -1.3351 8 6 5.3915 3.1835 -0.3847 9 1 6.0659 2.3705 -0.6538 10 6 5.9001 4.2393 0.6253 11 6 4.5898 4.9191 1.0964 12 7 3.6322 3.7849 1.1708 13 6 2.6826 3.5797 2.1050 14 8 2.0195 2.5645 2.0830 15 6 2.4451 4.6117 3.1772 16 6 1.3398 4.1440 4.0886 17 1 0.8579 3.1941 3.9096 18 6 0.9438 4.9286 5.1510 19 7 1.5310 6.0850 5.3692 20 14 -0.4268 4.3491 6.2803 21 1 0.1528 3.5622 7.3985 22 1 -1.1497 5.5260 6.8256 23 1 -1.3727 3.4982 5.5145 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.1265 3.0049 -2.2393 30 1 4.0590 4.6633 -1.4365 31 1 6.4093 3.7602 1.4616 32 1 6.5545 4.9597 0.1345 33 1 4.7227 5.3702 2.0797 34 1 4.2609 5.6640 0.3717 35 1 3.3582 4.7513 3.7559 36 1 2.1598 5.5568 2.7150 37 1 1.2526 6.6368 6.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194514.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:29 Heat of formation + Delta-G solvation = -103.604859 kcal Electronic energy + Delta-G solvation = -21120.308019 eV Core-core repulsion = 17863.278601 eV Total energy + Delta-G solvation = -3257.029418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23535 -40.66202 -39.23485 -37.59572 -35.14398 -34.03105 -32.72440 -31.26239 -30.84455 -26.42689 -25.68538 -25.09283 -23.60494 -22.48987 -20.91323 -20.30403 -18.70862 -18.41679 -17.98138 -17.65217 -17.01287 -16.59333 -16.26378 -15.99813 -15.47086 -15.02038 -14.89766 -14.32701 -14.04604 -13.84720 -13.79656 -13.69427 -13.20233 -13.03170 -12.93314 -12.81654 -12.61999 -12.54749 -12.20995 -12.07459 -11.87567 -11.64769 -11.51922 -11.44994 -11.21170 -10.64531 -10.52624 -9.47047 -8.27630 -6.34592 0.89217 1.37916 1.38572 1.50952 1.58857 1.71377 2.00189 2.40445 2.57194 3.07663 3.26133 3.49974 3.54342 3.92887 3.94354 4.03197 4.06459 4.21836 4.23846 4.37960 4.61502 4.64270 4.73206 4.80247 4.85053 4.96151 5.02750 5.07457 5.10617 5.17257 5.21717 5.34381 5.41601 5.71270 6.02193 6.53258 6.64639 6.78003 7.30052 7.40206 8.84540 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017102 B = 0.006907 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.888978 B = 4053.156263 C = 5419.251928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 O -0.339 6.339 4 C 0.513 3.487 5 O -0.539 6.539 6 C 0.020 3.980 7 C -0.103 4.103 8 C -0.119 4.119 9 H 0.136 0.864 10 C -0.095 4.095 11 C 0.089 3.911 12 N -0.598 5.598 13 C 0.524 3.476 14 O -0.556 6.556 15 C 0.026 3.974 16 C -0.537 4.537 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.921 5.921 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.271 1.271 23 H -0.275 1.275 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 -2.764 -14.989 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.015 4.015 3 O -0.253 6.253 4 C 0.357 3.643 5 O -0.429 6.429 6 C -0.068 4.068 7 C -0.141 4.141 8 C -0.139 4.139 9 H 0.154 0.846 10 C -0.132 4.132 11 C -0.032 4.032 12 N -0.335 5.335 13 C 0.316 3.684 14 O -0.434 6.434 15 C -0.013 4.013 16 C -0.575 4.575 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.200 1.200 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.792 -3.488 -14.745 16.605 hybrid contribution -0.847 -0.538 1.063 1.462 sum 5.945 -4.026 -13.682 15.452 Atomic orbital electron populations 1.21761 0.90904 1.04195 1.02958 1.23183 0.97067 0.79524 1.01689 1.86632 1.23528 1.33146 1.82033 1.22312 0.81006 0.90435 0.70577 1.90573 1.61369 1.43033 1.47943 1.21099 1.03450 0.88611 0.93656 1.23678 0.96360 1.03728 0.90360 1.24058 0.88413 1.02136 0.99270 0.84589 1.22405 0.96124 0.97342 0.97376 1.23042 0.87741 0.88440 1.03949 1.48741 1.35708 1.26652 1.22395 1.21539 0.76903 0.88175 0.81788 1.90578 1.48158 1.30019 1.74599 1.18959 0.97899 0.93039 0.91387 1.21336 1.19001 1.05321 1.11832 0.92920 1.25740 0.99168 0.94892 0.98754 1.70019 1.43176 1.12050 1.30872 0.85489 0.79046 0.78112 0.78648 1.19821 1.19546 1.20035 0.90695 0.87396 0.93649 0.89860 0.93454 0.85192 0.84804 0.90418 0.84824 0.89354 0.87868 0.94278 0.93902 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 10.29 71.98 0.74 -3.09 16 2 C 0.06 1.94 6.19 71.98 0.45 2.38 16 3 O -0.34 -13.70 7.98 -44.05 -0.35 -14.05 16 4 C 0.51 20.03 6.50 71.24 0.46 20.50 16 5 O -0.54 -22.09 16.58 21.98 0.36 -21.72 16 6 C 0.02 0.63 3.39 2.99 0.01 0.64 16 7 C -0.10 -2.06 9.62 30.59 0.29 -1.77 16 8 C -0.12 -2.61 6.83 -9.83 -0.07 -2.68 16 9 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 10 C -0.09 -1.79 7.01 31.84 0.22 -1.57 16 11 C 0.09 2.28 6.49 86.63 0.56 2.84 16 12 N -0.60 -22.31 3.30 -766.07 -2.53 -24.83 16 13 C 0.52 25.62 7.85 87.66 0.69 26.31 16 14 O -0.56 -30.76 12.51 19.12 0.24 -30.52 16 15 C 0.03 1.40 4.49 29.10 0.13 1.53 16 16 C -0.54 -32.19 8.92 25.60 0.23 -31.96 16 17 H 0.05 3.34 6.75 -2.91 -0.02 3.33 16 18 C 0.01 0.77 5.46 84.65 0.46 1.24 16 19 N -0.92 -53.82 13.29 21.45 0.28 -53.53 16 20 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.13 2.08 7.14 -2.39 -0.02 2.07 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 2.43 7.26 -2.39 -0.02 2.41 16 34 H 0.10 2.06 7.28 -2.39 -0.02 2.05 16 35 H 0.04 2.09 7.81 -2.38 -0.02 2.07 16 36 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -78.24 313.50 5.28 -72.95 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.07 Total: 9.53 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.18 Total: 14.38 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -2.24 Total: -78.37 kcal Atomic # 8 Polarization: -66.54 SS G_CDS: 0.25 Total: -66.29 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.24 5.28 -72.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194514.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.650 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds