Wall clock time and date at job start Mon Mar 30 2020 00:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47224 * 2 1 4 4 C 1.34233 * 116.99790 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00005 * 180.02562 * 4 3 2 7 7 H 1.09001 * 115.49398 * 34.62699 * 6 4 3 8 8 C 1.53009 * 117.44500 * 180.02562 * 6 4 3 9 9 H 1.09000 * 119.53451 * 354.28798 * 8 6 4 10 10 C 1.54386 * 118.12325 * 199.19171 * 8 6 4 11 11 N 1.48145 * 104.61709 * 270.79279 * 10 8 6 12 12 C 1.34776 * 127.83717 * 219.58431 * 11 10 8 13 13 O 1.21282 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00035 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.47294 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 12 17 17 C 1.37870 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31520 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47216 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 119.99848 * 19 17 15 22 22 H 1.48501 * 109.47057 * 239.99829 * 19 17 15 23 23 C 1.48151 * 104.32544 * 39.84866 * 11 10 8 24 24 C 1.54286 * 61.49745 * 106.73772 * 8 6 4 25 25 H 1.09004 * 121.81555 * 252.04077 * 24 8 6 26 26 H 1.09005 * 109.46671 * 59.99761 * 1 2 3 27 27 H 1.08997 * 109.47698 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47376 * 300.00322 * 1 2 3 29 29 H 1.09004 * 109.46968 * 240.00319 * 2 1 3 30 30 H 1.08997 * 109.46773 * 120.00561 * 2 1 3 31 31 H 1.08992 * 110.40480 * 152.00927 * 10 8 6 32 32 H 1.08997 * 110.40914 * 29.57603 * 10 8 6 33 33 H 1.09001 * 109.46665 * 60.00498 * 14 12 11 34 34 H 1.09000 * 109.47722 * 300.00830 * 14 12 11 35 35 H 0.97004 * 119.99507 * 180.02562 * 18 17 15 36 36 H 1.08999 * 110.40476 * 78.93637 * 23 11 10 37 37 H 1.08998 * 110.40479 * 201.37072 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9372 0.0012 7 1 3.3519 3.6801 0.5602 8 6 5.4452 3.0698 0.0011 9 1 6.0622 2.1762 0.0951 10 6 6.0588 4.4137 0.4493 11 7 6.1483 5.2165 -0.7925 12 6 7.1440 6.0407 -1.1742 13 8 8.1146 6.1894 -0.4623 14 6 7.0518 6.7766 -2.4861 15 6 8.2837 7.6242 -2.6742 16 1 9.0562 7.6290 -1.9195 17 6 8.4244 8.3933 -3.8098 18 7 7.4834 8.3877 -4.7286 19 14 9.9516 9.4433 -4.0433 20 1 10.8519 9.2746 -2.8744 21 1 10.6591 9.0204 -5.2786 22 1 9.5578 10.8702 -4.1623 23 6 4.8919 4.9128 -1.5167 24 6 4.6778 3.3956 -1.2971 25 1 4.7117 2.7374 -2.1653 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 7.0508 4.2562 0.8724 32 1 5.4093 4.9053 1.1736 33 1 6.1682 7.4148 -2.4833 34 1 6.9780 6.0574 -3.3018 35 1 7.5827 8.9286 -5.5277 36 1 4.0631 5.4811 -1.0946 37 1 5.0028 5.1323 -2.5786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:50 Heat of formation + Delta-G solvation = -88.269026 kcal Electronic energy + Delta-G solvation = -19683.596503 eV Core-core repulsion = 16427.232097 eV Total energy + Delta-G solvation = -3256.364406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97475 -39.66128 -37.68553 -36.68598 -33.26763 -32.95177 -32.01397 -29.40115 -28.13432 -26.81371 -24.41316 -23.18327 -22.42725 -20.67863 -20.10803 -18.75257 -18.11176 -16.99061 -16.79165 -16.45626 -15.70558 -15.23785 -14.95201 -14.37737 -14.22083 -14.14245 -13.50078 -13.18380 -12.90109 -12.84074 -12.44663 -12.31101 -12.20698 -11.94772 -11.83222 -11.52112 -11.21933 -10.85344 -10.77088 -10.70671 -10.67194 -10.40082 -10.25269 -9.96822 -9.25731 -8.72677 -8.46361 -8.29094 -6.07919 -4.07508 1.78503 2.26782 3.31096 3.32869 3.39675 3.44645 3.53493 3.58603 4.28022 4.39698 4.44285 4.48850 4.57264 4.62185 4.78679 4.90818 4.96078 5.05905 5.30348 5.31431 5.40732 5.46178 5.59867 5.65286 5.75083 5.85685 5.94408 5.99280 6.11588 6.17381 6.69024 7.15350 7.28967 7.52135 7.94755 7.99708 8.34461 9.03226 9.12696 9.57726 11.04452 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.045032 B = 0.003247 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.637493 B = 8622.200344 C = 9010.199612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.497 3.503 5 O -0.506 6.506 6 C -0.141 4.141 7 H 0.138 0.862 8 C -0.133 4.133 9 H 0.131 0.869 10 C 0.128 3.872 11 N -0.637 5.637 12 C 0.538 3.462 13 O -0.539 6.539 14 C 0.011 3.989 15 C -0.509 4.509 16 H 0.076 0.924 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.132 3.868 24 C -0.137 4.137 25 H 0.131 0.869 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.261 0.739 36 H 0.076 0.924 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 -14.531 8.138 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.340 3.660 5 O -0.394 6.394 6 C -0.160 4.160 7 H 0.156 0.844 8 C -0.152 4.152 9 H 0.149 0.851 10 C 0.005 3.995 11 N -0.374 5.374 12 C 0.331 3.669 13 O -0.415 6.415 14 C -0.028 4.028 15 C -0.547 4.547 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.009 3.991 24 C -0.156 4.156 25 H 0.148 0.852 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.465 -14.566 8.309 22.146 hybrid contribution 0.525 0.171 -0.221 0.594 sum -13.941 -14.395 8.088 21.610 Atomic orbital electron populations 1.21812 0.92467 1.03008 1.03700 1.23056 0.95472 0.80051 1.02676 1.86494 1.24157 1.32441 1.83893 1.22469 0.80511 0.90893 0.72080 1.90674 1.60571 1.42819 1.45346 1.22455 0.95672 0.92922 1.04998 0.84400 1.23798 0.90253 1.00669 1.00524 0.85145 1.21665 1.01590 0.87806 0.88450 1.49667 1.20403 1.46570 1.20810 1.21871 0.79236 0.76459 0.89298 1.90559 1.31281 1.63608 1.56014 1.19241 1.00215 0.95570 0.87747 1.21214 1.03940 1.24576 1.05005 0.90622 1.25003 0.96900 0.96975 0.95706 1.69968 1.33438 1.41095 1.09500 0.86369 0.82850 0.79767 0.78126 1.19462 1.20984 1.20978 1.21839 0.87165 0.90515 0.99590 1.24563 1.01575 0.98334 0.91133 0.85168 0.91299 0.90198 0.91405 0.91134 0.91198 0.89191 0.91214 0.93347 0.93359 0.92921 0.90611 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.35 -3.68 10.22 -39.27 -0.40 -4.08 16 4 C 0.50 5.83 7.75 36.00 0.28 6.11 16 5 O -0.51 -7.22 16.08 -18.75 -0.30 -7.52 16 6 C -0.14 -1.49 6.05 -89.54 -0.54 -2.03 16 7 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.13 -1.63 6.43 -89.22 -0.57 -2.21 16 9 H 0.13 1.66 7.80 -51.93 -0.41 1.26 16 10 C 0.13 1.82 6.84 -2.41 -0.02 1.81 16 11 N -0.64 -11.16 3.31 -169.06 -0.56 -11.72 16 12 C 0.54 12.38 7.91 -10.99 -0.09 12.29 16 13 O -0.54 -14.23 15.73 5.56 0.09 -14.15 16 14 C 0.01 0.29 4.43 -29.03 -0.13 0.16 16 15 C -0.51 -14.73 8.92 -34.44 -0.31 -15.04 16 16 H 0.08 2.30 6.75 -52.49 -0.35 1.94 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.13 1.79 6.77 -2.19 -0.01 1.77 16 24 C -0.14 -1.60 7.03 -86.77 -0.61 -2.21 16 25 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 30 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 7.96 -51.93 -0.41 0.82 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.39 7.31 -51.93 -0.38 1.01 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -33.86 320.97 -7.43 -41.29 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.32 Total: -2.68 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.49 Total: 2.39 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.18 Total: -37.12 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.62 Total: -25.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.86 -7.43 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.978 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds