Wall clock time and date at job start Mon Mar 30 2020 00:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00248 * 2 1 4 4 H 1.08993 * 115.55985 * 334.31293 * 3 2 1 5 5 C 1.53002 * 117.49872 * 188.61515 * 3 2 1 6 6 C 1.52997 * 60.00190 * 252.51285 * 5 3 2 7 7 N 1.46504 * 117.49877 * 252.51333 * 6 5 3 8 8 C 1.34776 * 120.00166 * 140.72096 * 7 6 5 9 9 O 1.21282 * 119.99799 * 355.67707 * 8 7 6 10 10 C 1.50704 * 119.99926 * 175.67475 * 8 7 6 11 11 C 1.50698 * 109.46865 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00367 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00014 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00371 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99900 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47246 * 270.00577 * 15 13 11 17 17 H 1.48504 * 109.46626 * 30.00147 * 15 13 11 18 18 H 1.48498 * 109.46805 * 149.99913 * 15 13 11 19 19 C 1.50698 * 117.51779 * 107.48078 * 6 5 3 20 20 O 1.20819 * 120.00139 * 355.86800 * 19 6 5 21 21 O 1.34238 * 119.99908 * 175.86213 * 19 6 5 22 22 C 1.45199 * 116.99683 * 179.97438 * 21 19 6 23 23 C 1.53001 * 109.46882 * 179.97438 * 22 21 19 24 24 H 1.07992 * 120.00516 * 179.97438 * 1 2 3 25 25 H 1.08010 * 119.99409 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99454 * 179.97438 * 2 1 3 27 27 H 1.08999 * 117.49791 * 145.01966 * 5 3 2 28 28 H 1.09002 * 117.49382 * 0.02562 * 5 3 2 29 29 H 0.96997 * 119.99602 * 320.71983 * 7 6 5 30 30 H 1.09000 * 109.46571 * 60.00304 * 10 8 7 31 31 H 1.08998 * 109.47035 * 299.99747 * 10 8 7 32 32 H 0.97001 * 120.00167 * 180.02562 * 14 13 11 33 33 H 1.08991 * 109.47370 * 300.00229 * 22 21 19 34 34 H 1.09001 * 109.46944 * 60.00828 * 22 21 19 35 35 H 1.09000 * 109.47197 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.47704 * 300.00556 * 23 22 21 37 37 H 1.09007 * 109.46975 * 60.00394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.5314 2.1554 -0.4262 5 6 3.5789 1.2459 -0.2033 6 6 3.0044 1.5776 1.1754 7 7 3.1210 2.9615 1.6417 8 6 2.1031 3.5339 2.3145 9 8 1.0615 2.9315 2.4659 10 6 2.2594 4.9226 2.8788 11 6 0.9872 5.3266 3.5782 12 1 0.1493 4.6458 3.6112 13 6 0.8926 6.5654 4.1760 14 7 -0.2174 6.9179 4.7869 15 14 2.3419 7.7427 4.1196 16 1 3.2116 7.5142 5.3013 17 1 3.1221 7.5081 2.8780 18 1 1.8440 9.1417 4.1345 19 6 3.1062 0.5206 2.2447 20 8 3.5587 -0.5674 1.9777 21 8 2.6942 0.7879 3.4940 22 6 2.8214 -0.2776 4.4722 23 6 2.3054 0.2101 5.8275 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 4.0436 2.0573 -0.7634 28 1 4.0306 0.2630 -0.3375 29 1 3.9308 3.4658 1.4662 30 1 2.4666 5.6224 2.0693 31 1 3.0852 4.9349 3.5902 32 1 -0.2840 7.7896 5.2071 33 1 2.2372 -1.1391 4.1492 34 1 3.8694 -0.5630 4.5643 35 1 2.4014 -0.5896 6.5620 36 1 2.8899 1.0715 6.1504 37 1 1.2575 0.4959 5.7358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:10 Heat of formation + Delta-G solvation = -74.866118 kcal Electronic energy + Delta-G solvation = -20840.987466 eV Core-core repulsion = 17585.204253 eV Total energy + Delta-G solvation = -3255.783213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75944 -38.87778 -37.47085 -36.05546 -33.46722 -32.83162 -31.55183 -31.51123 -29.44103 -25.36068 -23.56949 -22.95084 -22.41591 -20.54959 -19.83003 -19.44241 -17.67641 -16.91290 -16.48183 -16.39975 -15.92701 -15.46160 -14.34261 -14.28592 -14.17070 -13.88576 -13.64376 -13.30216 -12.93708 -12.66223 -12.25173 -12.15622 -11.84268 -11.66630 -11.49967 -11.35566 -11.04164 -10.92996 -10.72697 -10.58664 -10.40143 -10.36319 -9.98069 -9.38721 -9.26405 -8.77767 -8.59469 -8.54979 -6.03143 -4.02553 2.01944 2.32782 2.69283 3.25966 3.31933 3.34298 3.49533 3.61303 3.80842 4.40328 4.54996 4.64782 4.75761 5.03749 5.08561 5.11880 5.21482 5.27865 5.33450 5.49930 5.54018 5.76228 5.83445 5.93969 6.03676 6.10945 6.20343 6.59611 6.60505 6.65328 6.77634 6.80509 6.91122 7.52684 7.91144 8.06644 8.55840 9.09268 9.18811 9.55292 11.09798 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.006071 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.823262 B = 4611.073761 C = 5151.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.080 4.080 4 H 0.126 0.874 5 C -0.135 4.135 6 C 0.100 3.900 7 N -0.715 5.715 8 C 0.525 3.475 9 O -0.506 6.506 10 C -0.026 4.026 11 C -0.510 4.510 12 H 0.093 0.907 13 C 0.069 3.931 14 N -0.897 5.897 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.267 1.267 18 H -0.286 1.286 19 C 0.504 3.496 20 O -0.518 6.518 21 O -0.327 6.327 22 C 0.063 3.937 23 C -0.153 4.153 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.401 0.599 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -12.328 -7.355 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.100 4.100 4 H 0.144 0.856 5 C -0.172 4.172 6 C 0.009 3.991 7 N -0.372 5.372 8 C 0.314 3.686 9 O -0.378 6.378 10 C -0.066 4.066 11 C -0.548 4.548 12 H 0.111 0.889 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.700 3.300 16 H -0.202 1.202 17 H -0.191 1.191 18 H -0.212 1.212 19 C 0.347 3.653 20 O -0.407 6.407 21 O -0.242 6.242 22 C -0.011 4.011 23 C -0.210 4.210 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.237 0.763 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.410 -12.927 -7.106 16.981 hybrid contribution 1.216 0.866 0.166 1.502 sum 9.627 -12.061 -6.940 16.921 Atomic orbital electron populations 1.23880 0.95804 1.02269 0.98227 1.22295 0.95787 0.95923 1.02063 1.21743 0.91952 0.98663 0.97612 0.85618 1.23535 0.96280 1.04684 0.92694 1.19882 1.09497 0.83450 0.86259 1.45745 1.20675 1.10074 1.60709 1.21484 0.82120 0.89174 0.75816 1.90599 1.27305 1.64306 1.55544 1.19671 1.00651 0.88945 0.97309 1.20980 0.98606 1.01797 1.33400 0.88899 1.24964 0.95664 0.97664 0.94960 1.69891 1.26111 1.21245 1.36329 0.86910 0.83326 0.80859 0.78886 1.20174 1.19140 1.21156 1.22602 0.72964 0.87038 0.82726 1.90605 1.43382 1.24679 1.82066 1.86695 1.75262 1.43260 1.18948 1.23021 1.01212 0.88951 0.87882 1.21790 1.03378 1.02281 0.93554 0.88202 0.87875 0.86740 0.86640 0.86391 0.76326 0.93701 0.93988 0.92625 0.91575 0.91694 0.90577 0.91262 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 14.35 29.01 0.42 -1.79 16 2 C -0.14 -1.96 8.48 -36.03 -0.31 -2.27 16 3 C -0.08 -1.13 5.71 -91.77 -0.52 -1.65 16 4 H 0.13 1.81 8.14 -51.93 -0.42 1.38 16 5 C -0.13 -1.52 9.67 -26.73 -0.26 -1.78 16 6 C 0.10 1.54 2.12 -132.97 -0.28 1.26 16 7 N -0.72 -11.67 5.38 -48.68 -0.26 -11.93 16 8 C 0.53 11.28 7.25 -10.98 -0.08 11.21 16 9 O -0.51 -12.72 14.69 1.74 0.03 -12.70 16 10 C -0.03 -0.60 4.53 -29.03 -0.13 -0.73 16 11 C -0.51 -14.70 9.48 -34.44 -0.33 -15.03 16 12 H 0.09 3.05 7.00 -52.48 -0.37 2.68 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 15 Si 0.87 20.67 27.47 -169.99 -4.67 16.01 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.50 8.70 6.77 36.00 0.24 8.94 16 20 O -0.52 -8.91 15.48 -18.74 -0.29 -9.20 16 21 O -0.33 -6.03 8.99 -42.11 -0.38 -6.40 16 22 C 0.06 0.92 6.19 37.16 0.23 1.15 16 23 C -0.15 -2.00 10.29 37.16 0.38 -1.62 16 24 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 25 H 0.10 1.47 8.05 -52.48 -0.42 1.05 16 26 H 0.11 1.51 7.81 -52.49 -0.41 1.10 16 27 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.12 1.27 7.68 -51.93 -0.40 0.87 16 29 H 0.40 5.15 8.83 -40.82 -0.36 4.79 16 30 H 0.05 0.97 7.20 -51.93 -0.37 0.60 16 31 H 0.04 0.92 7.57 -51.93 -0.39 0.53 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -34.66 324.50 -5.92 -40.58 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.27 Total: 6.04 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.73 Total: -0.42 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.51 Total: -38.79 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.64 Total: -28.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.66 -5.92 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.285 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds