Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00248 * 2 1 4 4 H 1.08993 * 115.55985 * 334.31293 * 3 2 1 5 5 C 1.53002 * 117.49872 * 188.61515 * 3 2 1 6 6 C 1.52997 * 60.00190 * 252.51285 * 5 3 2 7 7 N 1.46504 * 117.49877 * 252.51333 * 6 5 3 8 8 C 1.34776 * 120.00166 * 140.72096 * 7 6 5 9 9 O 1.21282 * 119.99799 * 355.67707 * 8 7 6 10 10 C 1.50704 * 119.99926 * 175.67475 * 8 7 6 11 11 C 1.50698 * 109.46865 * 179.97438 * 10 8 7 12 12 H 1.08005 * 120.00367 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00014 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00371 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99900 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47246 * 270.00577 * 15 13 11 17 17 H 1.48504 * 109.46626 * 30.00147 * 15 13 11 18 18 H 1.48498 * 109.46805 * 149.99913 * 15 13 11 19 19 C 1.50698 * 117.51779 * 107.48078 * 6 5 3 20 20 O 1.20819 * 120.00139 * 355.86800 * 19 6 5 21 21 O 1.34238 * 119.99908 * 175.86213 * 19 6 5 22 22 C 1.45199 * 116.99683 * 179.97438 * 21 19 6 23 23 C 1.53001 * 109.46882 * 179.97438 * 22 21 19 24 24 H 1.07992 * 120.00516 * 179.97438 * 1 2 3 25 25 H 1.08010 * 119.99409 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99454 * 179.97438 * 2 1 3 27 27 H 1.08999 * 117.49791 * 145.01966 * 5 3 2 28 28 H 1.09002 * 117.49382 * 0.02562 * 5 3 2 29 29 H 0.96997 * 119.99602 * 320.71983 * 7 6 5 30 30 H 1.09000 * 109.46571 * 60.00304 * 10 8 7 31 31 H 1.08998 * 109.47035 * 299.99747 * 10 8 7 32 32 H 0.97001 * 120.00167 * 180.02562 * 14 13 11 33 33 H 1.08991 * 109.47370 * 300.00229 * 22 21 19 34 34 H 1.09001 * 109.46944 * 60.00828 * 22 21 19 35 35 H 1.09000 * 109.47197 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.47704 * 300.00556 * 23 22 21 37 37 H 1.09007 * 109.46975 * 60.00394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.5314 2.1554 -0.4262 5 6 3.5789 1.2459 -0.2033 6 6 3.0044 1.5776 1.1754 7 7 3.1210 2.9615 1.6417 8 6 2.1031 3.5339 2.3145 9 8 1.0615 2.9315 2.4659 10 6 2.2594 4.9226 2.8788 11 6 0.9872 5.3266 3.5782 12 1 0.1493 4.6458 3.6112 13 6 0.8926 6.5654 4.1760 14 7 -0.2174 6.9179 4.7869 15 14 2.3419 7.7427 4.1196 16 1 3.2116 7.5142 5.3013 17 1 3.1221 7.5081 2.8780 18 1 1.8440 9.1417 4.1345 19 6 3.1062 0.5206 2.2447 20 8 3.5587 -0.5674 1.9777 21 8 2.6942 0.7879 3.4940 22 6 2.8214 -0.2776 4.4722 23 6 2.3054 0.2101 5.8275 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 4.0436 2.0573 -0.7634 28 1 4.0306 0.2630 -0.3375 29 1 3.9308 3.4658 1.4662 30 1 2.4666 5.6224 2.0693 31 1 3.0852 4.9349 3.5902 32 1 -0.2840 7.7896 5.2071 33 1 2.2372 -1.1391 4.1492 34 1 3.8694 -0.5630 4.5643 35 1 2.4014 -0.5896 6.5620 36 1 2.8899 1.0715 6.1504 37 1 1.2575 0.4959 5.7358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = -99.075595 kcal Electronic energy + Delta-G solvation = -20842.037268 eV Core-core repulsion = 17585.204253 eV Total energy + Delta-G solvation = -3256.833014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.02145 -40.35436 -38.82388 -37.34732 -34.96655 -34.79039 -32.86790 -32.65284 -31.34119 -26.66703 -25.34786 -24.08238 -23.60211 -21.87028 -21.22099 -20.72998 -19.10202 -18.84082 -17.71966 -17.70673 -17.49436 -16.83465 -16.22882 -15.80035 -15.42789 -15.10580 -15.04552 -14.76980 -14.37186 -14.05113 -13.69074 -13.43456 -13.20639 -13.02311 -12.77468 -12.59802 -12.47031 -12.39878 -12.12395 -12.08665 -11.80857 -11.57359 -11.56779 -11.49212 -10.76043 -10.62365 -10.49302 -9.84052 -8.22882 -6.30589 0.82849 1.18323 1.41322 1.44842 1.50567 1.55458 1.99892 2.15781 2.40586 2.73467 3.10737 3.50032 3.51020 3.65584 3.92082 3.98281 4.01707 4.11881 4.23660 4.36728 4.57046 4.67857 4.74041 4.76744 4.81313 4.81848 5.06027 5.09761 5.10790 5.39724 5.43289 5.51527 5.57046 5.74850 6.27444 6.61772 6.70768 6.88550 7.29530 7.55128 8.94564 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.006071 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.823262 B = 4611.073761 C = 5151.737271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 C -0.095 4.095 4 H 0.118 0.882 5 C -0.088 4.088 6 C 0.068 3.932 7 N -0.691 5.691 8 C 0.527 3.473 9 O -0.555 6.555 10 C -0.025 4.025 11 C -0.527 4.527 12 H 0.030 0.970 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.957 3.043 16 H -0.265 1.265 17 H -0.227 1.227 18 H -0.287 1.287 19 C 0.498 3.502 20 O -0.523 6.523 21 O -0.358 6.358 22 C 0.056 3.944 23 C -0.148 4.148 24 H 0.120 0.880 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.422 0.578 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.713 -12.248 -8.778 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.115 4.115 4 H 0.136 0.864 5 C -0.125 4.125 6 C -0.022 4.022 7 N -0.348 5.348 8 C 0.316 3.684 9 O -0.430 6.430 10 C -0.065 4.065 11 C -0.565 4.565 12 H 0.048 0.952 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.779 3.221 16 H -0.190 1.190 17 H -0.150 1.150 18 H -0.213 1.213 19 C 0.342 3.658 20 O -0.412 6.412 21 O -0.274 6.274 22 C -0.017 4.017 23 C -0.205 4.205 24 H 0.138 0.862 25 H 0.105 0.895 26 H 0.141 0.859 27 H 0.170 0.830 28 H 0.148 0.852 29 H 0.261 0.739 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.005 -12.875 -8.569 19.578 hybrid contribution 0.013 0.728 0.633 0.965 sum 12.018 -12.146 -7.936 18.840 Atomic orbital electron populations 1.24001 0.96083 1.02499 0.98288 1.22429 0.95906 0.96267 1.01973 1.21833 0.93993 0.98551 0.97099 0.86372 1.23773 0.93791 1.06452 0.88462 1.20207 1.12736 0.82121 0.87146 1.45251 1.19932 1.10677 1.58928 1.21187 0.82482 0.88711 0.76061 1.90593 1.29541 1.65256 1.57634 1.19584 0.98133 0.90671 0.98104 1.21142 0.99489 1.01285 1.34632 0.95176 1.26098 0.99486 0.99897 0.93970 1.70095 1.29401 1.22150 1.37833 0.85591 0.78736 0.76925 0.80897 1.18991 1.14952 1.21323 1.22927 0.72691 0.87511 0.82710 1.90581 1.43717 1.24876 1.82074 1.86694 1.75600 1.44997 1.20071 1.23274 1.02408 0.88425 0.87610 1.21812 1.01445 1.03261 0.93986 0.86225 0.89533 0.85878 0.83043 0.85153 0.73924 0.90974 0.91761 0.92446 0.91205 0.89988 0.86952 0.92104 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 14.35 67.78 0.97 -3.65 16 2 C -0.15 -3.94 8.48 25.64 0.22 -3.72 16 3 C -0.10 -2.54 5.71 -11.54 -0.07 -2.61 16 4 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 5 C -0.09 -1.65 9.67 30.59 0.30 -1.36 16 6 C 0.07 1.97 2.12 2.86 0.01 1.98 16 7 N -0.69 -21.09 5.38 -426.31 -2.29 -23.38 16 8 C 0.53 22.51 7.25 87.66 0.64 23.14 16 9 O -0.55 -29.04 14.69 0.61 0.01 -29.03 16 10 C -0.03 -1.13 4.53 29.10 0.13 -1.00 16 11 C -0.53 -31.36 9.48 25.60 0.24 -31.12 16 12 H 0.03 2.11 7.00 -2.91 -0.02 2.09 16 13 C 0.00 0.09 5.47 84.65 0.46 0.56 16 14 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 15 Si 0.96 41.68 27.47 68.60 1.88 43.56 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.23 -8.39 6.54 99.48 0.65 -7.74 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.50 16.66 6.77 71.24 0.48 17.14 16 20 O -0.52 -17.11 15.48 21.98 0.34 -16.77 16 21 O -0.36 -13.24 8.99 -48.78 -0.44 -13.68 16 22 C 0.06 1.60 6.19 71.98 0.45 2.05 16 23 C -0.15 -3.88 10.29 71.98 0.74 -3.14 16 24 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 25 H 0.09 2.59 8.05 -2.91 -0.02 2.57 16 26 H 0.12 3.05 7.81 -2.91 -0.02 3.03 16 27 H 0.15 1.78 8.14 -2.39 -0.02 1.77 16 28 H 0.13 2.23 7.68 -2.39 -0.02 2.21 16 29 H 0.42 9.25 8.83 -92.71 -0.82 8.43 16 30 H 0.07 2.87 7.20 -2.39 -0.02 2.85 16 31 H 0.06 2.62 7.57 -2.39 -0.02 2.61 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.07 1.90 8.13 -2.39 -0.02 1.89 16 34 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -80.70 324.50 4.56 -76.13 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.20 Total: 25.61 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.57 Total: -1.72 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.00 Total: -84.10 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -0.09 Total: -59.48 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -80.70 4.56 -76.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.942 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds