Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34747 * 117.00489 * 2 1 4 4 O 1.21453 * 119.99766 * 359.97438 * 3 2 1 5 5 C 1.47528 * 120.00099 * 179.97438 * 3 2 1 6 6 C 1.34252 * 120.00018 * 179.71878 * 5 3 2 7 7 C 1.47690 * 120.00329 * 180.27278 * 6 5 3 8 8 O 1.21533 * 119.99361 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00256 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00008 * 180.02562 * 9 7 6 11 11 H 1.09010 * 109.41553 * 35.00731 * 10 9 7 12 12 C 1.52957 * 109.41502 * 154.86078 * 10 9 7 13 13 C 1.53227 * 109.40914 * 183.70503 * 12 10 9 14 14 C 1.51261 * 108.53819 * 305.37563 * 13 12 10 15 15 C 1.37884 * 120.85218 * 231.32499 * 14 13 12 16 16 N 1.31512 * 119.99613 * 359.97438 * 15 14 13 17 17 Si 1.86800 * 120.00121 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47358 * 89.99725 * 17 15 14 19 19 H 1.48501 * 109.46637 * 209.99926 * 17 15 14 20 20 H 1.48506 * 109.47001 * 329.99513 * 17 15 14 21 21 C 1.51274 * 118.30236 * 51.34356 * 14 13 12 22 22 C 1.52955 * 109.41763 * 275.14742 * 10 9 7 23 23 H 1.08999 * 109.47388 * 300.00605 * 1 2 3 24 24 H 1.09004 * 109.46714 * 60.00089 * 1 2 3 25 25 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00282 * 0.02562 * 5 3 2 27 27 H 1.08001 * 120.00169 * 0.28380 * 6 5 3 28 28 H 0.97000 * 119.99732 * 0.02562 * 9 7 6 29 29 H 1.09003 * 109.48194 * 303.68792 * 12 10 9 30 30 H 1.08997 * 109.48325 * 63.71199 * 12 10 9 31 31 H 1.09000 * 109.62364 * 65.08714 * 13 12 10 32 32 H 1.09001 * 109.63290 * 185.65587 * 13 12 10 33 33 H 0.96994 * 119.99846 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.62318 * 68.36610 * 21 14 13 35 35 H 1.08999 * 109.62590 * 188.74786 * 21 14 13 36 36 H 1.09005 * 109.47802 * 296.27017 * 22 10 9 37 37 H 1.08999 * 109.48679 * 56.31317 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4024 2.2192 -0.0005 5 6 3.5371 1.2777 0.0006 6 6 4.1467 2.4738 -0.0051 7 6 5.6215 2.5510 -0.0107 8 8 6.2833 1.5317 -0.0105 9 7 6.2335 3.7519 -0.0159 10 6 7.6964 3.8284 -0.0219 11 1 8.0999 3.0051 -0.6114 12 6 8.1334 5.1577 -0.6395 13 6 9.6624 5.1986 -0.7307 14 6 10.2334 4.9327 0.6446 15 6 11.1718 5.7790 1.1963 16 7 11.5818 6.8331 0.5253 17 14 11.8606 5.4283 2.8969 18 1 13.0679 4.5723 2.7751 19 1 12.2254 6.7078 3.5566 20 1 10.8360 4.7262 3.7109 21 6 9.7490 3.7143 1.3990 22 6 8.2167 3.7290 1.4130 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 4.1253 0.3719 0.0006 27 1 3.5586 3.3796 -0.0055 28 1 5.7052 4.5654 -0.0156 29 1 7.7070 5.2522 -1.6383 30 1 7.7841 5.9806 -0.0159 31 1 10.0083 4.4329 -1.4250 32 1 9.9825 6.1816 -1.0762 33 1 12.2422 7.4283 0.9132 34 1 10.1029 2.8112 0.9017 35 1 10.1275 3.7420 2.4208 36 1 7.8656 4.5866 1.9871 37 1 7.8495 2.8102 1.8701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144104087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = -118.349720 kcal Electronic energy + Delta-G solvation = -19691.866091 eV Core-core repulsion = 16434.197287 eV Total energy + Delta-G solvation = -3257.668803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68575 -39.65677 -37.03362 -36.73934 -33.81108 -33.31413 -31.59005 -29.71368 -28.51854 -27.41890 -24.92913 -22.39894 -21.57375 -20.91007 -19.83305 -19.24049 -18.40862 -17.12769 -16.65816 -16.64936 -15.85882 -15.66460 -14.68722 -14.42663 -14.14261 -13.92146 -13.64659 -13.21712 -12.79803 -12.76238 -12.35961 -12.24800 -12.13603 -11.68757 -11.15984 -11.05487 -10.97406 -10.87573 -10.76075 -10.26185 -10.16161 -10.05084 -9.87603 -9.56665 -9.05630 -8.91272 -8.52187 -8.37139 -6.12950 -4.04027 0.38256 2.28005 2.39236 3.26547 3.30557 3.34988 3.35918 3.45308 4.36549 4.44789 4.74693 4.78760 4.83589 4.90976 5.14678 5.16824 5.55164 5.66046 5.81364 5.88495 5.96651 6.13920 6.38422 6.44090 6.66154 6.68456 6.84755 6.91921 7.07212 7.17849 7.36182 7.40398 7.61774 7.65749 7.69371 7.82910 8.33413 8.35181 8.93273 9.51837 10.96490 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.046769 B = 0.003287 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.544906 B = 8516.319175 C = 8758.136725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.496 3.504 4 O -0.504 6.504 5 C -0.120 4.120 6 C -0.096 4.096 7 C 0.533 3.467 8 O -0.532 6.532 9 N -0.710 5.710 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.115 4.115 13 C 0.012 3.988 14 C -0.489 4.489 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.019 4.019 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.157 0.843 27 H 0.144 0.856 28 H 0.398 0.602 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.007 0.993 32 H 0.061 0.939 33 H 0.264 0.736 34 H 0.019 0.981 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.171 -8.548 -0.805 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.341 3.659 4 O -0.394 6.394 5 C -0.141 4.141 6 C -0.118 4.118 7 C 0.318 3.682 8 O -0.410 6.410 9 N -0.359 5.359 10 C 0.049 3.951 11 H 0.099 0.901 12 C -0.153 4.153 13 C -0.025 4.025 14 C -0.508 4.508 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.057 4.057 22 C -0.152 4.152 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.232 0.768 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.776 -8.806 -0.808 19.854 hybrid contribution -0.178 0.419 0.959 1.061 sum -17.954 -8.387 0.150 19.817 Atomic orbital electron populations 1.23316 0.75807 1.03941 1.02733 1.86597 1.23732 1.32428 1.84015 1.21596 0.89890 0.81500 0.72942 1.90851 1.67152 1.36060 1.45304 1.22459 0.89685 1.00739 1.01219 1.23644 0.95103 0.99056 0.93952 1.18398 0.87195 0.84509 0.78052 1.90802 1.66357 1.34505 1.49378 1.46374 1.09535 1.07279 1.72662 1.21168 0.75678 0.99982 0.98234 0.90060 1.21945 1.01394 0.94507 0.97461 1.19345 0.88323 0.99041 0.95833 1.20054 1.22195 1.07336 1.01213 1.24848 0.95778 0.94521 0.97516 1.69829 1.30994 1.14002 1.37979 0.86674 0.79456 0.77431 0.84885 1.20368 1.21672 1.18932 1.19795 0.91112 0.97381 0.97435 1.21898 0.99447 0.99216 0.94615 0.91691 0.91701 0.87827 0.82567 0.83880 0.76797 0.94474 0.92582 0.97481 0.92000 0.92567 0.96211 0.94546 0.92929 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.51 10.58 -40.62 -0.43 -3.94 16 3 C 0.50 5.63 7.93 34.52 0.27 5.91 16 4 O -0.50 -6.70 16.04 -19.23 -0.31 -7.01 16 5 C -0.12 -1.35 9.72 -37.20 -0.36 -1.71 16 6 C -0.10 -1.11 9.60 -37.13 -0.36 -1.47 16 7 C 0.53 8.07 7.75 -12.40 -0.10 7.97 16 8 O -0.53 -10.00 15.91 5.34 0.08 -9.92 16 9 N -0.71 -10.63 5.07 -54.85 -0.28 -10.91 16 10 C 0.15 2.86 2.35 -67.98 -0.16 2.70 16 11 H 0.08 1.69 7.57 -51.92 -0.39 1.30 16 12 C -0.11 -2.25 5.40 -26.64 -0.14 -2.40 16 13 C 0.01 0.30 5.97 -27.49 -0.16 0.13 16 14 C -0.49 -12.61 5.51 -98.92 -0.55 -13.15 16 15 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -25.13 12.73 55.43 0.71 -24.42 16 17 Si 0.89 20.85 27.53 -169.99 -4.68 16.17 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.02 6.11 56.52 0.35 -5.67 16 21 C -0.02 -0.45 5.60 -27.48 -0.15 -0.60 16 22 C -0.11 -2.32 5.50 -26.63 -0.15 -2.46 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.16 1.72 7.53 -52.49 -0.40 1.33 16 27 H 0.14 1.40 7.53 -52.49 -0.39 1.00 16 28 H 0.40 4.75 8.59 -40.82 -0.35 4.40 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -30.86 313.98 -6.19 -37.05 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.13 Total: 0.07 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.88 Total: -1.83 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.43 Total: -35.33 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.65 Total: -20.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.68 Total: 16.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.86 -6.19 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144104087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.298 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds