Wall clock time and date at job start Mon Mar 30 2020 00:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34747 * 117.00489 * 2 1 4 4 O 1.21453 * 119.99766 * 359.97438 * 3 2 1 5 5 C 1.47528 * 120.00099 * 179.97438 * 3 2 1 6 6 C 1.34252 * 120.00018 * 179.71878 * 5 3 2 7 7 C 1.47690 * 120.00329 * 180.27278 * 6 5 3 8 8 O 1.21533 * 119.99361 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00256 * 180.02562 * 7 6 5 10 10 C 1.46490 * 120.00008 * 180.02562 * 9 7 6 11 11 H 1.09010 * 109.41553 * 35.00731 * 10 9 7 12 12 C 1.52957 * 109.41502 * 154.86078 * 10 9 7 13 13 C 1.53227 * 109.40914 * 183.70503 * 12 10 9 14 14 C 1.51261 * 108.53819 * 305.37563 * 13 12 10 15 15 C 1.37884 * 120.85218 * 231.32499 * 14 13 12 16 16 N 1.31512 * 119.99613 * 359.97438 * 15 14 13 17 17 Si 1.86800 * 120.00121 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47358 * 89.99725 * 17 15 14 19 19 H 1.48501 * 109.46637 * 209.99926 * 17 15 14 20 20 H 1.48506 * 109.47001 * 329.99513 * 17 15 14 21 21 C 1.51274 * 118.30236 * 51.34356 * 14 13 12 22 22 C 1.52955 * 109.41763 * 275.14742 * 10 9 7 23 23 H 1.08999 * 109.47388 * 300.00605 * 1 2 3 24 24 H 1.09004 * 109.46714 * 60.00089 * 1 2 3 25 25 H 1.08994 * 109.47661 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00282 * 0.02562 * 5 3 2 27 27 H 1.08001 * 120.00169 * 0.28380 * 6 5 3 28 28 H 0.97000 * 119.99732 * 0.02562 * 9 7 6 29 29 H 1.09003 * 109.48194 * 303.68792 * 12 10 9 30 30 H 1.08997 * 109.48325 * 63.71199 * 12 10 9 31 31 H 1.09000 * 109.62364 * 65.08714 * 13 12 10 32 32 H 1.09001 * 109.63290 * 185.65587 * 13 12 10 33 33 H 0.96994 * 119.99846 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.62318 * 68.36610 * 21 14 13 35 35 H 1.08999 * 109.62590 * 188.74786 * 21 14 13 36 36 H 1.09005 * 109.47802 * 296.27017 * 22 10 9 37 37 H 1.08999 * 109.48679 * 56.31317 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4024 2.2192 -0.0005 5 6 3.5371 1.2777 0.0006 6 6 4.1467 2.4738 -0.0051 7 6 5.6215 2.5510 -0.0107 8 8 6.2833 1.5317 -0.0105 9 7 6.2335 3.7519 -0.0159 10 6 7.6964 3.8284 -0.0219 11 1 8.0999 3.0051 -0.6114 12 6 8.1334 5.1577 -0.6395 13 6 9.6624 5.1986 -0.7307 14 6 10.2334 4.9327 0.6446 15 6 11.1718 5.7790 1.1963 16 7 11.5818 6.8331 0.5253 17 14 11.8606 5.4283 2.8969 18 1 13.0679 4.5723 2.7751 19 1 12.2254 6.7078 3.5566 20 1 10.8360 4.7262 3.7109 21 6 9.7490 3.7143 1.3990 22 6 8.2167 3.7290 1.4130 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 4.1253 0.3719 0.0006 27 1 3.5586 3.3796 -0.0055 28 1 5.7052 4.5654 -0.0156 29 1 7.7070 5.2522 -1.6383 30 1 7.7841 5.9806 -0.0159 31 1 10.0083 4.4329 -1.4250 32 1 9.9825 6.1816 -1.0762 33 1 12.2422 7.4283 0.9132 34 1 10.1029 2.8112 0.9017 35 1 10.1275 3.7420 2.4208 36 1 7.8656 4.5866 1.9871 37 1 7.8495 2.8102 1.8701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144104087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:13 Heat of formation + Delta-G solvation = -138.268258 kcal Electronic energy + Delta-G solvation = -19692.729823 eV Core-core repulsion = 16434.197287 eV Total energy + Delta-G solvation = -3258.532536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56023 -40.92851 -38.54337 -37.67690 -35.43302 -34.33680 -33.34801 -31.48341 -29.54534 -28.75015 -26.00894 -23.97552 -23.31410 -22.11305 -21.33652 -20.49069 -19.35775 -18.20159 -17.98995 -17.43359 -17.32894 -16.93014 -16.41788 -15.93652 -15.41288 -14.94212 -14.79266 -14.53439 -14.36811 -14.17958 -13.96288 -13.57475 -13.44153 -12.91755 -12.78166 -12.67756 -12.57300 -11.95465 -11.88378 -11.85653 -11.82044 -11.40006 -11.24926 -11.11934 -10.83852 -10.66706 -10.53671 -9.93123 -8.16400 -6.10638 -0.55922 1.39682 1.42904 1.44456 1.46466 1.50488 2.20558 2.29518 2.41784 3.11680 3.54059 3.89343 3.96527 4.07030 4.20341 4.29515 4.34346 4.49687 4.65007 4.72097 4.73269 4.84707 4.97529 5.00008 5.08065 5.11808 5.18899 5.24120 5.25987 5.57045 5.57178 5.67351 5.76780 5.83343 6.35516 6.51458 6.55522 6.95426 7.16034 7.47648 8.94051 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.046769 B = 0.003287 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.544906 B = 8516.319175 C = 8758.136725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.501 3.499 4 O -0.524 6.524 5 C -0.109 4.109 6 C -0.092 4.092 7 C 0.536 3.464 8 O -0.572 6.572 9 N -0.700 5.700 10 C 0.164 3.836 11 H 0.062 0.938 12 C -0.101 4.101 13 C 0.007 3.993 14 C -0.499 4.499 15 C 0.024 3.976 16 N -0.929 5.929 17 Si 0.937 3.063 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.250 1.250 21 C -0.022 4.022 22 C -0.107 4.107 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.417 0.583 29 H 0.061 0.939 30 H 0.059 0.941 31 H -0.002 1.002 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.015 0.985 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.405 -9.410 -0.158 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.347 3.653 4 O -0.415 6.415 5 C -0.130 4.130 6 C -0.113 4.113 7 C 0.323 3.677 8 O -0.452 6.452 9 N -0.350 5.350 10 C 0.060 3.940 11 H 0.080 0.920 12 C -0.140 4.140 13 C -0.031 4.031 14 C -0.518 4.518 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.764 3.236 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.175 1.175 21 C -0.060 4.060 22 C -0.146 4.146 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.152 0.848 26 H 0.175 0.825 27 H 0.184 0.816 28 H 0.254 0.746 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.053 -9.673 -0.158 22.265 hybrid contribution 0.457 0.590 0.687 1.015 sum -19.596 -9.083 0.530 21.605 Atomic orbital electron populations 1.23648 0.73868 1.06068 1.02957 1.86589 1.25641 1.31552 1.83451 1.21505 0.89732 0.81639 0.72430 1.90845 1.67559 1.36756 1.46386 1.22504 0.89896 1.00719 0.99871 1.23426 0.92709 1.00248 0.94912 1.18820 0.88492 0.83632 0.76710 1.90792 1.67576 1.35771 1.51105 1.46056 1.07938 1.08409 1.72554 1.20724 0.77963 0.98581 0.96744 0.92006 1.21707 0.98025 0.95109 0.99131 1.19315 0.91696 0.97082 0.95044 1.20613 1.21577 1.07699 1.01891 1.25567 0.96428 0.94686 1.00719 1.69951 1.32144 1.15247 1.39547 0.85859 0.79044 0.77212 0.81501 1.20374 1.21751 1.17462 1.19803 0.93280 0.95956 0.96948 1.21782 0.97285 0.99648 0.95840 0.91506 0.91473 0.84849 0.82516 0.81568 0.74641 0.92057 0.92252 0.98344 0.94760 0.92775 0.96700 0.94512 0.92455 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.36 -6.32 10.58 -56.58 -0.60 -6.92 16 3 C 0.50 10.30 7.93 70.27 0.56 10.86 16 4 O -0.52 -12.78 16.04 19.99 0.32 -12.45 16 5 C -0.11 -2.21 9.72 23.81 0.23 -1.98 16 6 C -0.09 -1.90 9.60 23.86 0.23 -1.67 16 7 C 0.54 15.12 7.75 86.74 0.67 15.79 16 8 O -0.57 -20.79 15.91 -3.82 -0.06 -20.85 16 9 N -0.70 -19.26 5.07 -445.74 -2.26 -21.52 16 10 C 0.16 5.93 2.35 44.96 0.11 6.04 16 11 H 0.06 2.52 7.57 -2.38 -0.02 2.50 16 12 C -0.10 -3.85 5.40 30.66 0.17 -3.69 16 13 C 0.01 0.32 5.97 30.10 0.18 0.50 16 14 C -0.50 -25.76 5.51 -16.17 -0.09 -25.85 16 15 C 0.02 1.32 5.46 84.66 0.46 1.79 16 16 N -0.93 -53.54 12.73 21.45 0.27 -53.27 16 17 Si 0.94 42.73 27.53 68.60 1.89 44.62 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.25 -10.73 6.11 99.48 0.61 -10.12 16 21 C -0.02 -1.00 5.60 30.11 0.17 -0.83 16 22 C -0.11 -4.20 5.50 30.66 0.17 -4.04 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.16 3.19 7.53 -2.91 -0.02 3.16 16 27 H 0.17 2.69 7.53 -2.91 -0.02 2.66 16 28 H 0.42 8.59 8.59 -92.71 -0.80 7.80 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.03 1.83 7.07 -2.39 -0.02 1.81 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.04 1.66 4.59 -2.39 -0.01 1.65 16 36 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.41 313.98 3.80 -62.60 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.19 Total: 9.38 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.05 Total: -1.58 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.99 Total: -74.79 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.34 Total: -40.22 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.89 Total: 44.62 kcal Total: -66.41 3.80 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144104087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.665 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds