Wall clock time and date at job start Mon Mar 30 2020 00:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35961 * 116.99645 * 2 1 4 4 C 1.39420 * 119.82294 * 0.02562 * 3 2 1 5 5 C 1.38090 * 120.57030 * 179.71975 * 4 3 2 6 6 C 1.38724 * 120.19985 * 0.51546 * 5 4 3 7 7 N 1.38859 * 120.18022 * 179.76404 * 6 5 4 8 8 C 1.46499 * 119.99829 * 359.72803 * 7 6 5 9 9 C 1.52997 * 109.47079 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47405 * 304.99751 * 9 8 7 11 11 O 1.42908 * 109.47259 * 64.99555 * 9 8 7 12 12 C 1.52999 * 109.47573 * 184.99675 * 9 8 7 13 13 O 1.42900 * 109.47480 * 174.99914 * 12 9 8 14 14 C 1.41538 * 119.63700 * 359.49463 * 6 5 4 15 15 C 1.41028 * 120.27317 * 180.27680 * 14 6 5 16 16 H 1.07995 * 120.00546 * 334.24401 * 15 14 6 17 17 C 1.39904 * 120.00017 * 154.24740 * 15 14 6 18 18 N 1.30892 * 119.99763 * 342.94918 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 162.94754 * 17 15 14 20 20 H 1.48501 * 109.47258 * 94.64069 * 19 17 15 21 21 H 1.48500 * 109.47546 * 214.63941 * 19 17 15 22 22 H 1.48501 * 109.47009 * 334.64071 * 19 17 15 23 23 C 1.37843 * 119.82267 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47357 * 299.99633 * 1 2 3 26 26 H 1.08997 * 109.47741 * 60.00352 * 1 2 3 27 27 H 1.07998 * 119.71385 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.90186 * 180.26234 * 5 4 3 29 29 H 0.96998 * 120.00242 * 179.72645 * 7 6 5 30 30 H 1.08992 * 109.47579 * 59.99608 * 8 7 6 31 31 H 1.09004 * 109.46972 * 299.99077 * 8 7 6 32 32 H 0.96697 * 113.99406 * 60.00439 * 11 9 8 33 33 H 1.09000 * 109.47163 * 54.99835 * 12 9 8 34 34 H 1.09005 * 109.46975 * 295.00481 * 12 9 8 35 35 H 0.96697 * 113.99972 * 180.02562 * 13 12 9 36 36 H 0.97000 * 120.00106 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.10247 * 0.05045 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3783 0.0005 5 6 1.8939 3.6168 0.0064 6 6 3.2778 3.7125 0.0010 7 7 3.8915 4.9581 0.0019 8 6 3.0771 6.1758 0.0025 9 6 3.9926 7.4016 0.0041 10 1 4.6819 7.3393 0.8463 11 8 4.7346 7.4436 -1.2165 12 6 3.1465 8.6701 0.1305 13 8 4.0055 9.8059 0.2491 14 6 4.0609 2.5334 0.0003 15 6 5.4688 2.6150 0.0007 16 1 5.9593 3.4874 -0.4049 17 6 6.2301 1.5657 0.5266 18 7 5.6690 0.6770 1.3068 19 14 8.0474 1.4326 0.1152 20 1 8.8458 2.0863 1.1831 21 1 8.4294 0.0009 0.0177 22 1 8.3116 2.1050 -1.1823 23 6 3.4229 1.2794 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.2051 2.3130 0.0005 28 1 1.2923 4.5138 0.0110 29 1 4.8594 5.0219 0.0021 30 1 2.4478 6.1917 0.8923 31 1 2.4482 6.1928 -0.8877 32 1 4.1842 7.4997 -2.0095 33 1 2.5144 8.5986 1.0156 34 1 2.5204 8.7789 -0.7552 35 1 3.5360 10.6470 0.3336 36 1 6.1969 -0.0503 1.6718 37 1 4.0100 0.3729 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163355624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:05 Heat of formation + Delta-G solvation = -115.874185 kcal Electronic energy + Delta-G solvation = -20208.471620 eV Core-core repulsion = 16950.910164 eV Total energy + Delta-G solvation = -3257.561456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.79866 -38.27576 -36.81886 -35.84880 -33.95472 -33.03936 -30.29269 -29.57640 -27.94196 -26.03830 -25.13802 -24.27512 -21.96027 -20.63686 -19.92152 -17.65616 -17.49892 -16.62934 -16.14305 -16.13209 -15.75914 -15.01287 -14.68952 -14.57837 -14.05726 -13.87449 -13.64705 -13.09276 -12.78111 -12.65482 -12.31236 -12.05565 -11.64784 -11.40547 -11.26042 -11.09003 -10.95272 -10.76020 -10.50677 -10.28183 -10.19245 -10.05836 -9.82932 -9.34326 -9.06425 -8.36392 -7.38222 -6.69605 -5.97173 -4.15551 2.82819 3.14031 3.17382 3.20977 3.27793 3.78485 4.01186 4.46015 4.48237 4.66111 4.73508 4.94070 5.09656 5.21707 5.33001 5.47920 5.70499 5.76407 5.84035 5.88721 5.98174 6.17631 6.19268 6.39519 6.89313 7.01509 7.21656 7.41579 7.48111 7.57185 7.65330 7.73095 7.93382 8.08693 8.30047 8.62769 8.83666 8.89222 9.01095 9.15451 10.29754 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.006541 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.874457 B = 4279.926587 C = 6285.984623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.094 3.906 4 C -0.279 4.279 5 C -0.150 4.150 6 C 0.093 3.907 7 N -0.742 5.742 8 C 0.112 3.888 9 C 0.098 3.902 10 H 0.109 0.891 11 O -0.547 6.547 12 C 0.048 3.952 13 O -0.564 6.564 14 C 0.100 3.900 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.173 4.173 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.400 0.600 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.371 0.629 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.376 0.624 36 H 0.279 0.721 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 9.584 -1.862 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.050 3.950 4 C -0.300 4.300 5 C -0.174 4.174 6 C -0.006 4.006 7 N -0.379 5.379 8 C -0.015 4.015 9 C 0.038 3.962 10 H 0.127 0.873 11 O -0.352 6.352 12 C -0.031 4.031 13 O -0.369 6.369 14 C 0.095 3.905 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.416 5.416 19 Si 0.728 3.272 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.194 4.194 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.236 0.764 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.090 0.910 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.256 8.789 -1.346 10.329 hybrid contribution -0.278 0.541 -0.289 0.674 sum -5.535 9.330 -1.635 10.971 Atomic orbital electron populations 1.22694 0.81272 1.01530 1.00230 1.85999 1.19032 1.29189 1.90396 1.18805 0.92394 0.82350 1.01489 1.20148 0.96865 0.92156 1.20835 1.19731 0.92165 0.95628 1.09869 1.17839 0.91019 0.85064 1.06654 1.43718 1.07536 1.00816 1.85874 1.21521 0.93778 0.85596 1.00616 1.22148 0.94188 0.90943 0.88943 0.87336 1.86653 1.36855 1.96570 1.15114 1.22859 0.92623 0.87227 1.00399 1.86568 1.36603 1.16878 1.96830 1.16952 0.92782 0.88509 0.92264 1.19163 0.90807 1.03318 1.35770 0.90561 1.25812 1.00742 0.94739 0.92785 1.69868 1.38201 1.11581 1.21985 0.86377 0.82449 0.78331 0.80021 1.19759 1.20142 1.18498 1.20290 0.89251 0.98543 1.11305 0.90198 0.93949 0.94007 0.89009 0.89365 0.76396 0.92892 0.93435 0.78196 0.92546 0.93222 0.77757 0.91011 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.80 101.05 0.99 1.65 16 2 O -0.33 -7.59 10.49 -19.62 -0.21 -7.80 16 3 C 0.09 2.35 6.67 -39.29 -0.26 2.08 16 4 C -0.28 -6.40 9.03 -39.20 -0.35 -6.76 16 5 C -0.15 -3.38 9.28 -39.46 -0.37 -3.74 16 6 C 0.09 2.21 6.68 -83.24 -0.56 1.66 16 7 N -0.74 -15.01 5.58 -58.18 -0.32 -15.34 16 8 C 0.11 1.71 4.54 -4.04 -0.02 1.69 16 9 C 0.10 1.33 3.28 -26.73 -0.09 1.24 16 10 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 11 O -0.55 -8.09 13.25 -40.08 -0.53 -8.62 16 12 C 0.05 0.49 6.68 37.16 0.25 0.74 16 13 O -0.56 -6.32 13.62 -40.08 -0.55 -6.87 16 14 C 0.10 2.65 5.58 -106.66 -0.59 2.06 16 15 C -0.46 -12.10 8.49 -37.90 -0.32 -12.42 16 16 H 0.08 1.92 6.69 -52.49 -0.35 1.57 16 17 C 0.08 1.96 5.14 -17.33 -0.09 1.87 16 18 N -0.79 -21.01 10.99 55.55 0.61 -20.40 16 19 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.17 -4.70 8.60 -38.80 -0.33 -5.03 16 24 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 25 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 27 H 0.09 1.86 6.26 -52.49 -0.33 1.53 16 28 H 0.09 1.73 6.70 -52.49 -0.35 1.38 16 29 H 0.40 8.39 6.69 -40.82 -0.27 8.11 16 30 H 0.05 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.05 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.37 4.15 9.04 45.56 0.41 4.56 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.38 2.26 9.12 45.56 0.42 2.68 16 36 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.13 3.60 6.22 -52.49 -0.33 3.27 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -31.90 311.40 -6.33 -38.23 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -3.25 Total: 16.97 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.75 Total: -14.97 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.29 Total: -35.73 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.28 Total: -23.28 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.90 -6.33 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163355624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.646 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds