Wall clock time and date at job start Mon Mar 30 2020 00:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35961 * 116.99645 * 2 1 4 4 C 1.39420 * 119.82294 * 0.02562 * 3 2 1 5 5 C 1.38090 * 120.57030 * 179.71975 * 4 3 2 6 6 C 1.38724 * 120.19985 * 0.51546 * 5 4 3 7 7 N 1.38859 * 120.18022 * 179.76404 * 6 5 4 8 8 C 1.46499 * 119.99829 * 359.72803 * 7 6 5 9 9 C 1.52997 * 109.47079 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47405 * 304.99751 * 9 8 7 11 11 O 1.42908 * 109.47259 * 64.99555 * 9 8 7 12 12 C 1.52999 * 109.47573 * 184.99675 * 9 8 7 13 13 O 1.42900 * 109.47480 * 174.99914 * 12 9 8 14 14 C 1.41538 * 119.63700 * 359.49463 * 6 5 4 15 15 C 1.41028 * 120.27317 * 180.27680 * 14 6 5 16 16 H 1.07995 * 120.00546 * 334.24401 * 15 14 6 17 17 C 1.39904 * 120.00017 * 154.24740 * 15 14 6 18 18 N 1.30892 * 119.99763 * 342.94918 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 162.94754 * 17 15 14 20 20 H 1.48501 * 109.47258 * 94.64069 * 19 17 15 21 21 H 1.48500 * 109.47546 * 214.63941 * 19 17 15 22 22 H 1.48501 * 109.47009 * 334.64071 * 19 17 15 23 23 C 1.37843 * 119.82267 * 179.97438 * 3 2 1 24 24 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47357 * 299.99633 * 1 2 3 26 26 H 1.08997 * 109.47741 * 60.00352 * 1 2 3 27 27 H 1.07998 * 119.71385 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.90186 * 180.26234 * 5 4 3 29 29 H 0.96998 * 120.00242 * 179.72645 * 7 6 5 30 30 H 1.08992 * 109.47579 * 59.99608 * 8 7 6 31 31 H 1.09004 * 109.46972 * 299.99077 * 8 7 6 32 32 H 0.96697 * 113.99406 * 60.00439 * 11 9 8 33 33 H 1.09000 * 109.47163 * 54.99835 * 12 9 8 34 34 H 1.09005 * 109.46975 * 295.00481 * 12 9 8 35 35 H 0.96697 * 113.99972 * 180.02562 * 13 12 9 36 36 H 0.97000 * 120.00106 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.10247 * 0.05045 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2831 2.3783 0.0005 5 6 1.8939 3.6168 0.0064 6 6 3.2778 3.7125 0.0010 7 7 3.8915 4.9581 0.0019 8 6 3.0771 6.1758 0.0025 9 6 3.9926 7.4016 0.0041 10 1 4.6819 7.3393 0.8463 11 8 4.7346 7.4436 -1.2165 12 6 3.1465 8.6701 0.1305 13 8 4.0055 9.8059 0.2491 14 6 4.0609 2.5334 0.0003 15 6 5.4688 2.6150 0.0007 16 1 5.9593 3.4874 -0.4049 17 6 6.2301 1.5657 0.5266 18 7 5.6690 0.6770 1.3068 19 14 8.0474 1.4326 0.1152 20 1 8.8458 2.0863 1.1831 21 1 8.4294 0.0009 0.0177 22 1 8.3116 2.1050 -1.1823 23 6 3.4229 1.2794 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 0.2051 2.3130 0.0005 28 1 1.2923 4.5138 0.0110 29 1 4.8594 5.0219 0.0021 30 1 2.4478 6.1917 0.8923 31 1 2.4482 6.1928 -0.8877 32 1 4.1842 7.4997 -2.0095 33 1 2.5144 8.5986 1.0156 34 1 2.5204 8.7789 -0.7552 35 1 3.5360 10.6470 0.3336 36 1 6.1969 -0.0503 1.6718 37 1 4.0100 0.3729 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163355624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:05 Heat of formation + Delta-G solvation = -142.736872 kcal Electronic energy + Delta-G solvation = -20209.636473 eV Core-core repulsion = 16950.910164 eV Total energy + Delta-G solvation = -3258.726309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47128 -39.47896 -38.36271 -36.84974 -35.65626 -34.72921 -31.75201 -31.25214 -29.46313 -27.48279 -26.92856 -25.66101 -23.25899 -22.22124 -21.66914 -19.42902 -18.50444 -17.97666 -17.65192 -17.39611 -17.13590 -16.67697 -16.28085 -16.22293 -15.40568 -15.16928 -14.88590 -14.63544 -14.20192 -13.95338 -13.75434 -13.54541 -13.36692 -13.11382 -12.86785 -12.75607 -12.58387 -12.22256 -11.85027 -11.81646 -11.77664 -11.13926 -11.07293 -10.95445 -10.91051 -10.01486 -9.30881 -8.59231 -7.75206 -6.09702 1.00017 1.33735 1.39061 1.50119 1.54904 2.23639 2.70591 2.81900 2.92966 3.43276 3.52584 3.79568 4.03457 4.10830 4.24819 4.39076 4.51389 4.52191 4.54537 4.57554 4.59654 4.71517 4.77702 5.08547 5.10174 5.15988 5.31447 5.60587 5.75097 5.84063 6.02343 6.22512 6.39700 6.79055 6.83130 6.91908 6.97935 7.05236 7.25186 7.34334 8.42795 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.006541 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.874457 B = 4279.926587 C = 6285.984623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.079 3.921 4 C -0.270 4.270 5 C -0.154 4.154 6 C 0.090 3.910 7 N -0.745 5.745 8 C 0.111 3.889 9 C 0.101 3.899 10 H 0.087 0.913 11 O -0.570 6.570 12 C 0.055 3.945 13 O -0.589 6.589 14 C 0.065 3.935 15 C -0.487 4.487 16 H 0.077 0.923 17 C 0.033 3.967 18 N -0.829 5.829 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.204 4.204 24 H 0.112 0.888 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.392 0.608 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.386 0.614 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.398 0.602 36 H 0.283 0.717 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 11.330 -2.245 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.034 3.966 4 C -0.291 4.291 5 C -0.178 4.178 6 C -0.010 4.010 7 N -0.380 5.380 8 C -0.014 4.014 9 C 0.041 3.959 10 H 0.105 0.895 11 O -0.377 6.377 12 C -0.023 4.023 13 O -0.398 6.398 14 C 0.060 3.940 15 C -0.517 4.517 16 H 0.095 0.905 17 C -0.180 4.180 18 N -0.456 5.456 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.183 1.183 23 C -0.226 4.226 24 H 0.130 0.870 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.820 10.583 -1.735 12.709 hybrid contribution 0.023 0.048 -0.181 0.189 sum -6.797 10.632 -1.916 12.763 Atomic orbital electron populations 1.23071 0.78066 1.04175 1.01247 1.85953 1.22383 1.28552 1.90321 1.18902 0.92053 0.83899 1.01750 1.20530 0.98407 0.91485 1.18630 1.20109 0.91837 0.96905 1.08963 1.18015 0.91733 0.85677 1.05566 1.43884 1.07663 1.01296 1.85132 1.21743 0.93786 0.84145 1.01718 1.22053 0.93758 0.92094 0.87956 0.89520 1.86614 1.38212 1.96684 1.16169 1.22747 0.91803 0.85425 1.02368 1.86498 1.38042 1.18276 1.96975 1.17298 0.93565 0.89602 0.93525 1.19377 0.91357 1.04109 1.36870 0.90508 1.26642 1.05104 0.94104 0.92189 1.69956 1.39978 1.12420 1.23235 0.85306 0.76917 0.78417 0.79737 1.18907 1.19564 1.18341 1.20232 0.90575 0.97941 1.13816 0.86994 0.93024 0.92626 0.85795 0.85800 0.77293 0.91819 0.91685 0.76511 0.90808 0.90799 0.75144 0.90675 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.80 113.37 1.11 2.03 16 2 O -0.36 -16.34 10.49 -93.11 -0.98 -17.32 16 3 C 0.08 3.97 6.67 22.46 0.15 4.12 16 4 C -0.27 -11.89 9.03 22.52 0.20 -11.69 16 5 C -0.15 -6.62 9.28 22.35 0.21 -6.41 16 6 C 0.09 4.29 6.68 38.96 0.26 4.55 16 7 N -0.75 -29.72 5.58 -337.98 -1.89 -31.60 16 8 C 0.11 3.14 4.54 86.38 0.39 3.53 16 9 C 0.10 2.57 3.28 30.59 0.10 2.67 16 10 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 11 O -0.57 -16.08 13.25 -144.34 -1.91 -17.99 16 12 C 0.05 0.97 6.68 71.98 0.48 1.45 16 13 O -0.59 -11.72 13.62 -144.34 -1.97 -13.69 16 14 C 0.06 3.57 5.58 -21.18 -0.12 3.45 16 15 C -0.49 -26.59 8.49 23.36 0.20 -26.39 16 16 H 0.08 4.02 6.69 -2.91 -0.02 4.00 16 17 C 0.03 1.76 5.14 85.24 0.44 2.20 16 18 N -0.83 -46.15 10.99 21.82 0.24 -45.91 16 19 Si 0.97 40.44 29.59 68.60 2.03 42.47 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 C -0.20 -11.60 8.60 22.78 0.20 -11.40 16 24 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 25 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 26 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 27 H 0.12 4.57 6.26 -2.91 -0.02 4.55 16 28 H 0.12 4.35 6.70 -2.91 -0.02 4.33 16 29 H 0.39 16.68 6.69 -92.71 -0.62 16.06 16 30 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 31 H 0.07 1.65 7.95 -2.39 -0.02 1.63 16 32 H 0.39 7.89 9.04 -74.06 -0.67 7.22 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.40 3.65 9.12 -74.06 -0.68 2.97 16 36 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 37 H 0.10 5.86 6.22 -2.91 -0.02 5.85 16 Total: -1.00 -71.80 311.40 -1.69 -73.49 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.84 Total: 42.44 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 3.62 Total: -31.89 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.65 Total: -77.51 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -4.86 Total: -48.99 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -71.80 -1.69 -73.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163355624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.243 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds