Wall clock time and date at job start Mon Mar 30 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46975 * 2 1 4 4 C 1.46904 * 110.99952 * 199.71259 * 3 2 1 5 5 C 1.50702 * 109.47039 * 66.04543 * 4 3 2 6 6 H 1.08005 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00016 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47139 * 59.99944 * 9 7 5 11 11 H 1.48498 * 109.47082 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46815 * 300.00179 * 9 7 5 13 13 C 1.46897 * 111.00065 * 75.75924 * 3 2 1 14 14 C 1.50706 * 109.47202 * 199.76435 * 13 3 2 15 15 C 1.38229 * 119.90804 * 84.41486 * 14 13 3 16 16 C 1.38664 * 120.08414 * 179.97438 * 15 14 13 17 17 O 1.35997 * 120.04443 * 179.97438 * 16 15 14 18 18 C 1.38984 * 119.91339 * 359.97438 * 16 15 14 19 19 O 1.36095 * 120.09010 * 179.97438 * 18 16 15 20 20 C 1.38977 * 119.81911 * 359.97438 * 18 16 15 21 21 O 1.35999 * 120.04307 * 180.02562 * 20 18 16 22 22 C 1.38233 * 119.90880 * 264.39092 * 14 13 3 23 23 H 1.09004 * 109.47449 * 294.86190 * 1 2 3 24 24 H 1.09002 * 109.47232 * 54.85949 * 1 2 3 25 25 H 1.09003 * 109.47491 * 174.85794 * 1 2 3 26 26 H 1.08997 * 109.47171 * 240.00050 * 2 1 3 27 27 H 1.08999 * 109.46796 * 119.99999 * 2 1 3 28 28 H 1.08996 * 109.47059 * 186.04929 * 4 3 2 29 29 H 1.08993 * 109.47159 * 306.04881 * 4 3 2 30 30 H 0.97002 * 120.00786 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47491 * 79.76323 * 13 3 2 32 32 H 1.08998 * 109.47546 * 319.76298 * 13 3 2 33 33 H 1.07994 * 119.95581 * 359.72214 * 15 14 13 34 34 H 0.96704 * 113.99927 * 90.00000 * 17 16 15 35 35 H 0.96697 * 113.99859 * 269.99872 * 19 18 16 36 36 H 0.96697 * 114.00385 * 270.02993 * 21 20 18 37 37 H 1.07999 * 119.95235 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4626 5 6 3.4796 1.0469 -1.9129 6 1 2.5780 0.7685 -2.4383 7 6 4.6921 1.0327 -2.5690 8 7 5.7901 1.3712 -1.9291 9 14 4.7755 0.5325 -4.3669 10 1 3.9402 1.4554 -5.1767 11 1 6.1833 0.5991 -4.8345 12 1 4.2691 -0.8553 -4.5185 13 6 1.8770 1.9938 1.3292 14 6 1.9164 3.4949 1.2012 15 6 0.7629 4.1906 0.8912 16 6 0.7949 5.5719 0.7729 17 8 -0.3403 6.2556 0.4674 18 6 1.9886 6.2567 0.9671 19 8 2.0242 7.6122 0.8514 20 6 3.1458 5.5534 1.2797 21 8 4.3163 6.2190 1.4712 22 6 3.1058 4.1722 1.3945 23 1 -0.3634 0.4321 0.9324 24 1 -0.3634 0.5915 -0.8404 25 1 -0.3634 -1.0235 -0.0921 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.7842 2.4695 -0.3515 29 1 4.0252 0.7737 0.1320 30 1 6.6433 1.3609 -2.3906 31 1 2.6939 1.6623 1.9703 32 1 0.9258 1.6914 1.7673 33 1 -0.1634 3.6575 0.7368 34 1 -0.8533 6.5312 1.2394 35 1 2.2193 7.9257 -0.0423 36 1 4.8396 6.3340 0.6662 37 1 4.0048 3.6248 1.6365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233011516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:54 Heat of formation + Delta-G solvation = -101.700037 kcal Electronic energy + Delta-G solvation = -20597.609095 eV Core-core repulsion = 17340.662276 eV Total energy + Delta-G solvation = -3256.946819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26583 -37.63149 -37.58097 -36.37263 -35.30927 -32.67266 -30.74486 -29.40735 -29.08161 -26.89808 -24.55744 -22.71622 -22.28980 -21.56087 -19.91280 -18.64579 -17.85311 -17.30147 -16.60235 -16.23646 -15.48099 -15.02101 -14.75151 -14.52203 -14.24359 -14.09442 -13.71109 -13.36884 -12.67814 -12.31031 -12.17640 -11.97703 -11.86959 -11.54580 -11.37650 -11.05471 -11.00271 -10.76841 -10.67864 -10.45817 -10.19121 -9.96178 -9.79439 -9.23409 -8.48758 -8.37742 -8.23961 -7.31638 -6.06354 -4.07135 1.28706 1.35533 3.30652 3.34899 3.37942 3.55502 4.01872 4.29370 4.40147 4.58472 4.95261 5.22080 5.29484 5.33096 5.54506 5.57260 5.69893 5.81806 5.93928 5.99229 6.06538 6.10613 6.31401 6.34486 6.43390 6.66144 6.74933 6.76856 6.80946 7.25375 7.29966 7.45847 7.68020 7.76385 7.96331 8.04808 8.15859 8.49772 9.00048 9.56811 11.04362 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.006212 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.486066 B = 4505.964949 C = 5368.840178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.531 5.531 4 C 0.190 3.810 5 C -0.507 4.507 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.088 3.912 14 C -0.033 4.033 15 C -0.117 4.117 16 C 0.089 3.911 17 O -0.491 6.491 18 C 0.043 3.957 19 O -0.486 6.486 20 C 0.095 3.905 21 O -0.490 6.490 22 C -0.120 4.120 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.019 0.981 28 H 0.035 0.965 29 H -0.010 1.010 30 H 0.261 0.739 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.387 0.613 35 H 0.384 0.616 36 H 0.390 0.610 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 6.052 6.634 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.256 5.256 4 C 0.065 3.935 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.040 4.040 14 C -0.034 4.034 15 C -0.136 4.136 16 C 0.044 3.956 17 O -0.301 6.301 18 C -0.003 4.003 19 O -0.295 6.295 20 C 0.049 3.951 21 O -0.300 6.300 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.242 0.758 35 H 0.239 0.761 36 H 0.245 0.755 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.704 6.251 6.881 12.735 hybrid contribution 0.900 -0.523 -1.047 1.477 sum -7.804 5.729 5.833 11.303 Atomic orbital electron populations 1.21808 0.96589 1.00405 1.01384 1.21989 0.94235 0.89977 1.01089 1.62155 1.25749 1.16848 1.20833 1.19802 0.81259 0.97077 0.95334 1.21121 0.93268 1.44718 0.95460 0.91919 1.24964 0.95639 0.95589 0.98306 1.69938 0.98432 1.48744 1.36702 0.86591 0.76860 0.79124 0.85030 1.20196 1.21362 1.20262 1.21047 1.00793 0.89559 0.92610 1.19605 0.91785 0.95999 0.95977 1.21174 0.99612 0.92270 1.00539 1.18576 0.86045 0.89994 1.00995 1.84807 1.34669 1.75041 1.35540 1.19054 0.92750 0.83496 1.04991 1.84835 1.93496 1.16610 1.34575 1.18539 0.85455 0.89815 1.01260 1.84839 1.30974 1.77227 1.36982 1.21387 0.98993 0.92505 1.00980 0.93876 0.92085 0.93343 0.89420 0.96274 0.94709 0.99240 0.92895 0.94351 0.90793 0.84853 0.75781 0.76074 0.75450 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.96 37.16 0.37 -1.78 16 2 C 0.06 1.02 5.51 -3.83 -0.02 1.00 16 3 N -0.53 -10.91 4.34 -237.52 -1.03 -11.94 16 4 C 0.19 4.76 4.54 -4.97 -0.02 4.74 16 5 C -0.51 -13.89 8.23 -34.44 -0.28 -14.17 16 6 H 0.06 1.71 7.31 -52.48 -0.38 1.33 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.09 1.51 4.94 -4.97 -0.02 1.49 16 14 C -0.03 -0.55 5.03 -104.62 -0.53 -1.08 16 15 C -0.12 -1.83 9.65 -39.43 -0.38 -2.21 16 16 C 0.09 1.36 6.71 -39.15 -0.26 1.10 16 17 O -0.49 -6.55 13.29 -34.31 -0.46 -7.00 16 18 C 0.04 0.68 6.73 -39.03 -0.26 0.41 16 19 O -0.49 -6.85 13.07 -45.30 -0.59 -7.44 16 20 C 0.09 1.56 6.71 -39.15 -0.26 1.29 16 21 O -0.49 -7.44 13.29 -34.32 -0.46 -7.90 16 22 C -0.12 -2.07 8.33 -39.43 -0.33 -2.40 16 23 H 0.04 0.58 6.89 -51.93 -0.36 0.22 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.81 6.58 -51.93 -0.34 1.47 16 27 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 28 H 0.03 0.92 6.33 -51.93 -0.33 0.59 16 29 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 33 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.39 3.31 9.06 45.56 0.41 3.72 16 35 H 0.38 3.87 9.07 45.56 0.41 4.28 16 36 H 0.39 4.34 9.06 45.56 0.41 4.75 16 37 H 0.14 2.39 7.99 -52.49 -0.42 1.97 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -32.84 315.45 -6.75 -39.60 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.58 Total: 9.05 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.10 Total: -10.15 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.30 Total: -37.23 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.50 Total: -22.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.84 -6.75 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233011516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.105 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds