Wall clock time and date at job start Mon Mar 30 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46975 * 2 1 4 4 C 1.46904 * 110.99952 * 199.71259 * 3 2 1 5 5 C 1.50702 * 109.47039 * 66.04543 * 4 3 2 6 6 H 1.08005 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00016 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00226 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47139 * 59.99944 * 9 7 5 11 11 H 1.48498 * 109.47082 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46815 * 300.00179 * 9 7 5 13 13 C 1.46897 * 111.00065 * 75.75924 * 3 2 1 14 14 C 1.50706 * 109.47202 * 199.76435 * 13 3 2 15 15 C 1.38229 * 119.90804 * 84.41486 * 14 13 3 16 16 C 1.38664 * 120.08414 * 179.97438 * 15 14 13 17 17 O 1.35997 * 120.04443 * 179.97438 * 16 15 14 18 18 C 1.38984 * 119.91339 * 359.97438 * 16 15 14 19 19 O 1.36095 * 120.09010 * 179.97438 * 18 16 15 20 20 C 1.38977 * 119.81911 * 359.97438 * 18 16 15 21 21 O 1.35999 * 120.04307 * 180.02562 * 20 18 16 22 22 C 1.38233 * 119.90880 * 264.39092 * 14 13 3 23 23 H 1.09004 * 109.47449 * 294.86190 * 1 2 3 24 24 H 1.09002 * 109.47232 * 54.85949 * 1 2 3 25 25 H 1.09003 * 109.47491 * 174.85794 * 1 2 3 26 26 H 1.08997 * 109.47171 * 240.00050 * 2 1 3 27 27 H 1.08999 * 109.46796 * 119.99999 * 2 1 3 28 28 H 1.08996 * 109.47059 * 186.04929 * 4 3 2 29 29 H 1.08993 * 109.47159 * 306.04881 * 4 3 2 30 30 H 0.97002 * 120.00786 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47491 * 79.76323 * 13 3 2 32 32 H 1.08998 * 109.47546 * 319.76298 * 13 3 2 33 33 H 1.07994 * 119.95581 * 359.72214 * 15 14 13 34 34 H 0.96704 * 113.99927 * 90.00000 * 17 16 15 35 35 H 0.96697 * 113.99859 * 269.99872 * 19 18 16 36 36 H 0.96697 * 114.00385 * 270.02993 * 21 20 18 37 37 H 1.07999 * 119.95235 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 -0.4626 5 6 3.4796 1.0469 -1.9129 6 1 2.5780 0.7685 -2.4383 7 6 4.6921 1.0327 -2.5690 8 7 5.7901 1.3712 -1.9291 9 14 4.7755 0.5325 -4.3669 10 1 3.9402 1.4554 -5.1767 11 1 6.1833 0.5991 -4.8345 12 1 4.2691 -0.8553 -4.5185 13 6 1.8770 1.9938 1.3292 14 6 1.9164 3.4949 1.2012 15 6 0.7629 4.1906 0.8912 16 6 0.7949 5.5719 0.7729 17 8 -0.3403 6.2556 0.4674 18 6 1.9886 6.2567 0.9671 19 8 2.0242 7.6122 0.8514 20 6 3.1458 5.5534 1.2797 21 8 4.3163 6.2190 1.4712 22 6 3.1058 4.1722 1.3945 23 1 -0.3634 0.4321 0.9324 24 1 -0.3634 0.5915 -0.8404 25 1 -0.3634 -1.0235 -0.0921 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.7842 2.4695 -0.3515 29 1 4.0252 0.7737 0.1320 30 1 6.6433 1.3609 -2.3906 31 1 2.6939 1.6623 1.9703 32 1 0.9258 1.6914 1.7673 33 1 -0.1634 3.6575 0.7368 34 1 -0.8533 6.5312 1.2394 35 1 2.2193 7.9257 -0.0423 36 1 4.8396 6.3340 0.6662 37 1 4.0048 3.6248 1.6365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233011516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:54 Heat of formation + Delta-G solvation = -128.817806 kcal Electronic energy + Delta-G solvation = -20598.785010 eV Core-core repulsion = 17340.662276 eV Total energy + Delta-G solvation = -3258.122733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46602 -39.03700 -38.75843 -37.55721 -36.60302 -34.72733 -32.05463 -30.95162 -30.34464 -28.59103 -26.10897 -24.29181 -23.70134 -22.85235 -21.43956 -19.82361 -19.04148 -18.52481 -18.43820 -17.62700 -16.86085 -16.55918 -16.13556 -16.04082 -15.62137 -15.49523 -15.16849 -14.63022 -14.24170 -13.95439 -13.59421 -13.48972 -13.14496 -12.92092 -12.78127 -12.66393 -12.55100 -12.33215 -12.30126 -12.00102 -11.71589 -11.51777 -11.21360 -11.07420 -10.58895 -9.61963 -9.48474 -8.99291 -8.18712 -6.27299 0.06486 0.13496 1.40721 1.42849 1.50665 2.32221 2.41993 2.88464 3.14011 3.18784 3.43944 3.46018 3.87822 4.08579 4.24204 4.31749 4.36853 4.54335 4.63778 4.77384 4.79616 4.83808 5.06525 5.10007 5.16183 5.19388 5.22761 5.38353 5.50645 5.54029 5.60189 5.68150 6.09314 6.38578 6.49508 6.65274 6.73060 6.88712 6.91916 7.41494 8.91689 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.006212 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.486066 B = 4505.964949 C = 5368.840178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.207 3.793 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.090 3.910 14 C -0.045 4.045 15 C -0.117 4.117 16 C 0.097 3.903 17 O -0.494 6.494 18 C 0.042 3.958 19 O -0.490 6.490 20 C 0.087 3.913 21 O -0.499 6.499 22 C -0.139 4.139 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.015 0.985 29 H -0.043 1.043 30 H 0.263 0.737 31 H 0.030 0.970 32 H 0.105 0.895 33 H 0.151 0.849 34 H 0.410 0.590 35 H 0.403 0.597 36 H 0.405 0.595 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 6.385 6.147 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 N -0.260 5.260 4 C 0.081 3.919 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.037 4.037 14 C -0.046 4.046 15 C -0.136 4.136 16 C 0.051 3.949 17 O -0.307 6.307 18 C -0.005 4.005 19 O -0.301 6.301 20 C 0.042 3.958 21 O -0.311 6.311 22 C -0.159 4.159 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.033 0.967 29 H -0.025 1.025 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.269 0.731 35 H 0.260 0.740 36 H 0.264 0.736 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.708 6.596 6.397 14.110 hybrid contribution 1.488 -0.545 -0.848 1.797 sum -9.220 6.051 5.549 12.345 Atomic orbital electron populations 1.21708 0.93165 1.01959 1.02134 1.22052 0.96930 0.88628 1.00004 1.62100 1.22482 1.18305 1.23112 1.19422 0.83546 0.94830 0.94139 1.21441 0.93315 1.44560 0.96648 0.92135 1.25818 0.95272 0.95526 1.02737 1.70066 0.98944 1.49749 1.38475 0.85548 0.76991 0.79109 0.79659 1.19581 1.20935 1.19297 1.21115 1.02059 0.89777 0.90794 1.19614 0.92245 0.95788 0.96953 1.21308 0.99604 0.92592 1.00081 1.18563 0.86531 0.89962 0.99815 1.84752 1.34092 1.74717 1.37102 1.19093 0.92592 0.84112 1.04658 1.84786 1.93457 1.15622 1.36272 1.18613 0.86212 0.89593 1.01375 1.84784 1.31010 1.76963 1.38364 1.21368 0.98799 0.93189 1.02512 0.91778 0.92881 0.91137 0.92253 0.95691 0.96680 1.02487 0.92818 0.95163 0.87644 0.83145 0.73098 0.73969 0.73648 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.96 71.98 0.72 -2.89 16 2 C 0.05 1.88 5.51 86.30 0.48 2.36 16 3 N -0.54 -22.05 4.34 -905.38 -3.93 -25.99 16 4 C 0.21 10.73 4.54 85.56 0.39 11.11 16 5 C -0.52 -29.11 8.23 25.60 0.21 -28.90 16 6 H 0.06 3.33 7.31 -2.91 -0.02 3.31 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -55.21 13.29 21.44 0.28 -54.93 16 9 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.09 3.06 4.94 85.56 0.42 3.48 16 14 C -0.05 -1.52 5.03 -19.87 -0.10 -1.62 16 15 C -0.12 -3.45 9.65 22.37 0.22 -3.23 16 16 C 0.10 2.76 6.71 22.55 0.15 2.91 16 17 O -0.49 -11.70 13.29 -79.58 -1.06 -12.76 16 18 C 0.04 1.25 6.73 22.63 0.15 1.40 16 19 O -0.49 -12.87 13.07 -70.48 -0.92 -13.79 16 20 C 0.09 2.87 6.71 22.55 0.15 3.03 16 21 O -0.50 -15.18 13.29 -79.60 -1.06 -16.24 16 22 C -0.14 -4.96 8.33 22.37 0.19 -4.77 16 23 H 0.06 1.48 6.89 -2.38 -0.02 1.47 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.48 6.58 -2.39 -0.02 2.46 16 27 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 28 H 0.02 0.84 6.33 -2.39 -0.02 0.82 16 29 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.03 1.07 7.90 -2.39 -0.02 1.05 16 32 H 0.11 2.87 6.54 -2.39 -0.02 2.86 16 33 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.41 5.65 9.06 -74.05 -0.67 4.98 16 35 H 0.40 7.28 9.07 -74.06 -0.67 6.61 16 36 H 0.41 9.07 9.06 -74.06 -0.67 8.40 16 37 H 0.12 4.47 7.99 -2.91 -0.02 4.44 16 Total: -1.00 -70.65 315.45 -2.12 -72.77 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.89 Total: 21.38 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.43 Total: -16.40 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.65 Total: -80.91 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -3.04 Total: -42.79 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.65 -2.12 -72.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233011516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.052 kcal (2) G-P(sol) polarization free energy of solvation -70.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds