Wall clock time and date at job start Mon Mar 30 2020 00:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.46991 * 2 1 4 4 C 1.46897 * 111.00475 * 59.49321 * 3 2 1 5 5 C 1.50704 * 109.47107 * 68.69654 * 4 3 2 6 6 H 1.08001 * 119.99707 * 5.18236 * 5 4 3 7 7 C 1.37876 * 120.00360 * 185.17959 * 5 4 3 8 8 N 1.31517 * 119.99566 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47142 * 60.00279 * 9 7 5 11 11 H 1.48500 * 109.47003 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47381 * 299.99863 * 9 7 5 13 13 C 1.46903 * 111.00103 * 295.53535 * 3 2 1 14 14 C 1.50694 * 109.47317 * 288.06760 * 13 3 2 15 15 C 1.38279 * 119.95329 * 264.74095 * 14 13 3 16 16 C 1.38483 * 120.05545 * 180.27682 * 15 14 13 17 17 O 1.36075 * 120.02103 * 180.02562 * 16 15 14 18 18 C 1.39178 * 119.96275 * 0.02562 * 16 15 14 19 19 O 1.35992 * 120.04617 * 180.02562 * 18 16 15 20 20 C 1.38501 * 119.90896 * 359.97438 * 18 16 15 21 21 C 1.38653 * 119.95970 * 85.02280 * 14 13 3 22 22 O 1.35978 * 119.97899 * 359.69676 * 21 14 13 23 23 H 1.09006 * 109.47098 * 56.79612 * 1 2 3 24 24 H 1.08998 * 109.47107 * 176.79479 * 1 2 3 25 25 H 1.09001 * 109.47005 * 296.79437 * 1 2 3 26 26 H 1.09000 * 109.46707 * 239.99510 * 2 1 3 27 27 H 1.08997 * 109.46632 * 119.99835 * 2 1 3 28 28 H 1.08998 * 109.47506 * 188.69963 * 4 3 2 29 29 H 1.09001 * 109.47133 * 308.70155 * 4 3 2 30 30 H 0.97003 * 119.99663 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47222 * 168.05915 * 13 3 2 32 32 H 1.09003 * 109.47018 * 48.06455 * 13 3 2 33 33 H 1.08001 * 119.97251 * 0.25919 * 15 14 13 34 34 H 0.96706 * 113.99956 * 269.97776 * 17 16 15 35 35 H 0.96701 * 113.99825 * 269.97727 * 19 18 16 36 36 H 1.08003 * 120.02296 * 179.97438 * 20 18 16 37 37 H 0.96698 * 113.99966 * 90.00295 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5388 2.1134 1.1815 5 6 2.2005 1.5593 2.4170 6 1 2.9685 0.8055 2.3262 7 6 1.8255 2.0148 3.6631 8 7 0.8899 2.9325 3.7736 9 14 2.6452 1.3275 5.1944 10 1 4.1044 1.5971 5.1381 11 1 2.0675 1.9765 6.3987 12 1 2.4148 -0.1378 5.2639 13 6 1.6378 2.0784 -1.2375 14 6 2.4550 1.5441 -2.3854 15 6 3.6109 2.1967 -2.7726 16 6 4.3604 1.7109 -3.8309 17 8 5.4981 2.3534 -4.2109 18 6 3.9494 0.5651 -4.5055 19 8 4.6844 0.0862 -5.5447 20 6 2.7913 -0.0874 -4.1164 21 6 2.0437 0.4022 -3.0557 22 8 0.9068 -0.2381 -2.6729 23 1 -0.3633 0.5628 -0.8599 24 1 -0.3633 -1.0260 -0.0575 25 1 -0.3633 0.4633 0.9173 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7840 3.1707 1.0812 29 1 0.4583 1.9973 1.2651 30 1 0.6258 3.2527 4.6503 31 1 1.8217 3.1470 -1.1268 32 1 0.5792 1.9106 -1.4361 33 1 3.9294 3.0863 -2.2494 34 1 5.3589 3.0365 -4.8811 35 1 4.4289 0.4451 -6.4055 36 1 2.4704 -0.9765 -4.6389 37 1 0.1093 0.0741 -3.1219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233485290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:55 Heat of formation + Delta-G solvation = -121.713475 kcal Electronic energy + Delta-G solvation = -20712.629283 eV Core-core repulsion = 17454.814616 eV Total energy + Delta-G solvation = -3257.814667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50361 -39.62239 -38.21068 -37.83993 -36.23005 -34.70754 -32.18496 -30.84227 -30.01485 -28.38670 -26.10449 -24.97084 -23.76789 -22.76617 -20.97299 -19.97236 -19.23255 -18.34434 -17.83002 -17.74296 -17.04552 -16.75098 -16.26713 -15.94492 -15.66222 -15.19459 -14.72976 -14.68709 -14.50947 -13.99245 -13.72977 -13.22484 -13.06130 -12.92117 -12.83685 -12.54694 -12.47118 -12.42339 -12.24485 -11.84521 -11.53011 -11.36977 -11.32047 -11.09725 -10.57818 -9.80282 -9.30675 -8.83701 -8.17441 -6.26468 0.07808 0.19416 1.39987 1.42625 1.50573 2.35881 2.43687 2.98596 3.14328 3.20217 3.45309 3.57649 3.84782 3.96533 4.27804 4.41850 4.48971 4.60399 4.63553 4.79044 4.86290 4.91684 4.99994 5.10206 5.13068 5.25626 5.33274 5.42085 5.48352 5.56895 5.66781 5.73924 6.11903 6.42870 6.66341 6.71314 6.86064 6.89987 7.00213 7.42537 8.92116 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.004845 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.983250 B = 5778.323324 C = 6293.467699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 N -0.543 5.543 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.270 1.270 13 C 0.094 3.906 14 C -0.094 4.094 15 C -0.108 4.108 16 C 0.065 3.935 17 O -0.499 6.499 18 C 0.092 3.908 19 O -0.496 6.496 20 C -0.157 4.157 21 C 0.126 3.874 22 O -0.490 6.490 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.084 0.916 27 H 0.040 0.960 28 H -0.002 1.002 29 H -0.014 1.014 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.406 0.594 35 H 0.409 0.591 36 H 0.155 0.845 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -2.757 -21.092 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.059 4.059 3 N -0.266 5.266 4 C 0.079 3.921 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.196 1.196 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.128 4.128 16 C 0.020 3.980 17 O -0.312 6.312 18 C 0.047 3.953 19 O -0.309 6.309 20 C -0.176 4.176 21 C 0.080 3.920 22 O -0.303 6.303 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.265 0.735 35 H 0.268 0.732 36 H 0.173 0.827 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.812 -3.650 -19.749 20.165 hybrid contribution -1.284 0.884 0.174 1.569 sum 0.528 -2.766 -19.575 19.776 Atomic orbital electron populations 1.22109 0.97741 1.01759 1.00319 1.21931 0.93570 0.89799 1.00616 1.62219 1.60066 1.02920 1.01411 1.19440 0.93125 0.92107 0.87438 1.21399 1.20510 1.22448 0.91519 0.92951 1.25790 0.95765 0.95468 1.02173 1.70059 1.31544 1.30803 1.24853 0.85548 0.78778 0.78666 0.78304 1.19688 1.20544 1.19562 1.20903 0.96790 0.97561 0.88103 1.20089 0.96879 0.95549 0.97040 1.21184 0.93336 1.01334 0.96905 1.18752 0.88444 0.93798 0.96983 1.84914 1.27879 1.55284 1.63098 1.18530 0.91112 0.93450 0.92235 1.84871 1.59066 1.69125 1.17870 1.21647 0.95140 1.02227 0.98575 1.18032 0.90038 0.90679 0.93237 1.84987 1.16258 1.61987 1.67102 0.91306 0.91681 0.95762 0.89818 0.94177 0.98442 0.99604 0.92751 0.91505 0.92805 0.85061 0.73544 0.73165 0.82710 0.73732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 8.38 71.98 0.60 -5.23 16 2 C 0.07 2.80 5.32 86.31 0.46 3.26 16 3 N -0.54 -24.07 4.63 -905.38 -4.19 -28.26 16 4 C 0.20 11.00 4.51 85.56 0.39 11.39 16 5 C -0.52 -30.43 8.46 25.60 0.22 -30.21 16 6 H 0.05 3.09 7.47 -2.91 -0.02 3.07 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 9 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.09 3.29 4.85 85.55 0.42 3.71 16 14 C -0.09 -2.78 5.18 -19.76 -0.10 -2.89 16 15 C -0.11 -3.08 9.61 22.34 0.21 -2.86 16 16 C 0.07 1.65 6.72 22.55 0.15 1.80 16 17 O -0.50 -11.21 13.29 -80.48 -1.07 -12.28 16 18 C 0.09 2.11 6.72 22.56 0.15 2.26 16 19 O -0.50 -9.47 13.29 -79.54 -1.06 -10.53 16 20 C -0.16 -3.45 9.92 22.44 0.22 -3.23 16 21 C 0.13 3.14 5.65 22.48 0.13 3.27 16 22 O -0.49 -10.90 8.47 -93.30 -0.79 -11.69 16 23 H 0.07 2.14 5.16 -2.38 -0.01 2.13 16 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.02 1.04 6.39 -2.39 -0.02 1.02 16 26 H 0.08 3.15 4.93 -2.39 -0.01 3.14 16 27 H 0.04 1.86 7.17 -2.39 -0.02 1.84 16 28 H 0.00 -0.14 7.80 -2.39 -0.02 -0.16 16 29 H -0.01 -0.78 5.93 -2.39 -0.01 -0.79 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.07 2.39 7.68 -2.39 -0.02 2.37 16 32 H 0.05 1.73 5.48 -2.39 -0.01 1.72 16 33 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.41 4.31 9.07 -74.05 -0.67 3.64 16 35 H 0.41 2.96 9.06 -74.06 -0.67 2.29 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.40 5.07 9.06 -74.06 -0.67 4.40 16 Total: -1.00 -75.12 302.34 -2.36 -77.48 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.87 Total: 11.76 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.31 Total: -17.93 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.90 Total: -84.46 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -2.92 Total: -34.50 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.12 -2.36 -77.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233485290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.229 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds