Wall clock time and date at job start Mon Mar 30 2020 00:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35988 * 116.99750 * 2 1 4 4 C 1.38695 * 119.99646 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.99607 * 180.02562 * 4 3 2 6 6 C 1.38695 * 119.99895 * 0.23516 * 5 4 3 7 7 O 1.35980 * 120.00045 * 179.71871 * 6 5 4 8 8 C 1.42900 * 117.00237 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47223 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47161 * 304.99994 * 9 8 7 11 11 O 1.42902 * 109.47126 * 64.99858 * 9 8 7 12 12 C 1.52995 * 109.47242 * 184.99758 * 9 8 7 13 13 N 1.46500 * 109.47275 * 180.02562 * 12 9 8 14 14 C 1.36942 * 120.00009 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99640 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00390 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99740 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46945 * 59.99727 * 18 16 14 20 20 H 1.48497 * 109.46789 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46882 * 299.99908 * 18 16 14 22 22 C 1.38698 * 120.00129 * 359.51199 * 6 5 4 23 23 C 1.38131 * 120.00008 * 0.48806 * 22 6 5 24 24 H 1.09006 * 109.46821 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47102 * 299.99763 * 1 2 3 26 26 H 1.09001 * 109.47201 * 60.00263 * 1 2 3 27 27 H 1.07999 * 120.00300 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.99660 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.46711 * 299.99515 * 8 7 6 30 30 H 1.08990 * 109.47316 * 59.99995 * 8 7 6 31 31 H 0.96703 * 114.00415 * 59.99742 * 11 9 8 32 32 H 1.09001 * 109.47236 * 300.00190 * 12 9 8 33 33 H 1.08997 * 109.47169 * 59.99815 * 12 9 8 34 34 H 0.97001 * 119.99864 * 0.02562 * 13 12 9 35 35 H 0.97005 * 120.00089 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.00054 * 180.20710 * 22 6 5 37 37 H 1.08001 * 120.00443 * 179.74616 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0585 2.5151 0.0011 6 6 3.3030 3.6782 0.0060 7 8 3.9203 4.8899 0.0123 8 6 3.0803 6.0459 0.0177 9 6 3.9475 7.3064 0.0237 10 1 4.6390 7.2677 0.8654 11 8 4.6867 7.3819 -1.1969 12 6 3.0527 8.5404 0.1551 13 7 3.8829 9.7474 0.1603 14 6 3.2976 10.9807 0.2687 15 1 2.2239 11.0635 0.3509 16 6 4.0843 12.1243 0.2731 17 7 5.3929 12.0234 0.1735 18 14 3.2860 13.8066 0.4217 19 1 2.5314 13.8853 1.6983 20 1 4.3362 14.8563 0.4025 21 1 2.3557 14.0154 -0.7168 22 6 1.9179 3.6056 0.0002 23 6 1.2909 2.3749 -0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0196 0.3785 0.0005 28 1 5.1370 2.5716 0.0019 29 1 2.4515 6.0422 -0.8727 30 1 2.4507 6.0334 0.9073 31 1 4.1342 7.4194 -1.9897 32 1 2.3612 8.5792 -0.6866 33 1 2.4888 8.4829 1.0861 34 1 4.8472 9.6731 0.0861 35 1 5.9426 12.8226 0.1761 36 1 1.3297 4.5114 0.0006 37 1 0.2123 2.3182 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252730733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:06 Heat of formation + Delta-G solvation = -111.493716 kcal Electronic energy + Delta-G solvation = -19369.009223 eV Core-core repulsion = 16111.637718 eV Total energy + Delta-G solvation = -3257.371505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40087 -40.13770 -38.66542 -37.10034 -35.93769 -33.27716 -32.21197 -31.32837 -29.97142 -27.94832 -27.20331 -24.86545 -23.54150 -22.74765 -22.47480 -19.45397 -19.19929 -18.65170 -17.96205 -17.50457 -16.92472 -16.59920 -16.45713 -15.82526 -15.72183 -15.66220 -15.01063 -14.95436 -14.50371 -14.18774 -14.05432 -13.76554 -13.40196 -13.37296 -12.97564 -12.71815 -12.66388 -12.37719 -12.20216 -12.01432 -11.83561 -11.55551 -11.35367 -11.02062 -10.93133 -10.08197 -9.03484 -8.72354 -7.94863 -5.25792 0.25386 0.46110 1.47488 1.51313 1.57589 2.10107 2.43750 2.57561 2.73165 3.36004 3.49099 3.61882 3.82432 3.84180 3.98194 4.10875 4.16111 4.25472 4.35117 4.42293 4.45115 4.50716 4.53139 4.55467 4.76082 4.87501 4.91141 5.06003 5.17324 5.28271 5.33879 5.46793 5.58753 6.24897 6.33934 6.53457 6.83112 7.32021 8.07028 8.29737 9.28434 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.049924 B = 0.002849 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.714304 B = 9825.370902 C =10272.515833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.077 3.923 4 C -0.117 4.117 5 C -0.124 4.124 6 C 0.077 3.923 7 O -0.325 6.325 8 C 0.041 3.959 9 C 0.113 3.887 10 H 0.089 0.911 11 O -0.566 6.566 12 C 0.127 3.873 13 N -0.743 5.743 14 C -0.250 4.250 15 H 0.081 0.919 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.979 3.021 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.275 1.275 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.118 0.882 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.384 0.616 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.375 0.625 35 H 0.252 0.748 36 H 0.146 0.854 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 -24.379 -0.895 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.032 3.968 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.032 3.968 7 O -0.239 6.239 8 C -0.034 4.034 9 C 0.053 3.947 10 H 0.107 0.893 11 O -0.372 6.372 12 C 0.000 4.000 13 N -0.386 5.386 14 C -0.381 4.381 15 H 0.099 0.901 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.807 3.193 19 H -0.202 1.202 20 H -0.223 1.223 21 H -0.201 1.201 22 C -0.193 4.193 23 C -0.186 4.186 24 H 0.136 0.864 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.232 0.768 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.207 0.793 35 H 0.060 0.940 36 H 0.164 0.836 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.181 -24.432 -0.466 26.873 hybrid contribution -0.591 1.306 -0.253 1.456 sum -11.772 -23.125 -0.719 25.959 Atomic orbital electron populations 1.23318 0.76712 1.05502 1.02099 1.86051 1.23196 1.26414 1.89281 1.19088 0.92586 0.84808 1.00326 1.20431 0.91809 0.98021 1.03330 1.20453 1.00858 0.89205 1.03718 1.19236 0.91902 0.85573 1.00119 1.86125 1.36372 1.12330 1.89088 1.23463 0.93199 0.83085 1.03679 1.21953 0.93685 0.90988 0.88081 0.89331 1.86608 1.37963 1.96569 1.16084 1.21348 0.93272 0.85767 0.99613 1.42447 1.06058 1.01327 1.88760 1.19634 0.92380 0.84814 1.41304 0.90114 1.25678 0.95993 1.01906 1.03468 1.69854 1.04548 1.28806 1.58849 0.85141 0.76871 0.78961 0.78331 1.20156 1.22327 1.20108 1.21305 0.92983 0.99538 1.05524 1.21290 1.01211 0.91063 1.05059 0.86370 0.91909 0.91880 0.83119 0.83968 0.89718 0.89452 0.76776 0.94371 0.94191 0.79267 0.93975 0.83646 0.82911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.02 10.50 -93.41 -0.98 -7.00 16 3 C 0.08 1.53 6.69 22.49 0.15 1.68 16 4 C -0.12 -2.37 9.98 22.36 0.22 -2.15 16 5 C -0.12 -2.81 9.98 22.36 0.22 -2.58 16 6 C 0.08 1.90 6.69 22.49 0.15 2.05 16 7 O -0.32 -9.22 10.10 -88.69 -0.90 -10.12 16 8 C 0.04 1.03 4.37 71.98 0.31 1.34 16 9 C 0.11 3.68 3.34 30.59 0.10 3.79 16 10 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 11 O -0.57 -20.20 13.05 -144.34 -1.88 -22.09 16 12 C 0.13 4.77 5.92 86.38 0.51 5.28 16 13 N -0.74 -38.15 5.49 -343.46 -1.89 -40.04 16 14 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 17 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 18 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.17 -3.59 9.03 22.35 0.20 -3.39 16 23 C -0.17 -3.04 9.03 22.35 0.20 -2.84 16 24 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 26 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 27 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.08 1.74 7.65 -2.39 -0.02 1.72 16 30 H 0.09 1.85 7.67 -2.39 -0.02 1.83 16 31 H 0.38 10.85 9.05 -74.06 -0.67 10.18 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.38 21.29 7.54 -92.71 -0.70 20.59 16 35 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 36 H 0.15 2.46 6.29 -2.91 -0.02 2.45 16 37 H 0.15 1.91 6.29 -2.91 -0.02 1.89 16 Total: -1.00 -71.81 318.04 0.88 -70.93 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.28 Total: 33.45 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.50 Total: -12.71 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -1.60 Total: -100.56 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -3.76 Total: -39.20 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -71.81 0.88 -70.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252730733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.568 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds