Wall clock time and date at job start Mon Mar 30 2020 00:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35985 * 117.00208 * 2 1 4 4 C 1.38694 * 119.99805 * 179.97438 * 3 2 1 5 5 C 1.38137 * 119.99760 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99827 * 359.97438 * 5 4 3 7 7 O 1.35983 * 119.99798 * 179.97438 * 6 5 4 8 8 C 1.42894 * 116.99993 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47529 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46613 * 54.99732 * 9 8 7 11 11 O 1.42902 * 109.47069 * 295.00363 * 9 8 7 12 12 C 1.52996 * 109.47530 * 174.99893 * 9 8 7 13 13 N 1.46498 * 109.47059 * 184.99929 * 12 9 8 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 9 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47290 * 120.00044 * 18 16 14 21 21 H 1.48503 * 109.47163 * 240.00049 * 18 16 14 22 22 C 1.38695 * 119.99959 * 0.25225 * 6 5 4 23 23 C 1.38129 * 120.00258 * 359.49702 * 22 6 5 24 24 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47365 * 300.00461 * 1 2 3 26 26 H 1.09003 * 109.46644 * 60.00668 * 1 2 3 27 27 H 1.08002 * 120.00760 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.99779 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47221 * 59.99876 * 8 7 6 30 30 H 1.09002 * 109.47447 * 300.00101 * 8 7 6 31 31 H 0.96696 * 113.99765 * 299.99828 * 11 9 8 32 32 H 1.09004 * 109.47066 * 65.00196 * 12 9 8 33 33 H 1.08994 * 109.46974 * 305.00344 * 12 9 8 34 34 H 0.97001 * 120.00384 * 0.02562 * 13 12 9 35 35 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.99689 * 179.72556 * 22 6 5 37 37 H 1.07998 * 120.00174 * 180.23183 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2841 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 3.0807 6.0458 0.0004 9 6 3.9479 7.3063 0.0025 10 1 4.6411 7.2717 -0.8381 11 8 4.6847 7.3755 1.2249 12 6 3.0534 8.5410 -0.1246 13 7 3.8885 9.7389 -0.2426 14 6 3.3043 10.9705 -0.3741 15 1 2.2280 11.0591 -0.3863 16 6 4.0955 12.1049 -0.4917 17 7 5.4073 11.9968 -0.4774 18 14 3.2988 13.7850 -0.6704 19 1 1.8214 13.6360 -0.6574 20 1 3.7180 14.6543 0.4583 21 1 3.7235 14.4004 -1.9534 22 6 1.9181 3.6055 0.0047 23 6 1.2910 2.3748 -0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.0197 0.3784 0.0014 28 1 5.1371 2.5713 0.0019 29 1 2.4500 6.0376 0.8894 30 1 2.4528 6.0378 -0.8906 31 1 4.1306 7.4091 2.0167 32 1 2.4214 8.6244 0.7597 33 1 2.4268 8.4460 -1.0113 34 1 4.8551 9.6593 -0.2320 35 1 5.9601 12.7896 -0.5592 36 1 1.3300 4.5113 0.0088 37 1 0.2125 2.3183 -0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252730734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:08 Heat of formation + Delta-G solvation = -111.857788 kcal Electronic energy + Delta-G solvation = -19363.718443 eV Core-core repulsion = 16106.331151 eV Total energy + Delta-G solvation = -3257.387292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40181 -40.13902 -38.66463 -37.10004 -35.96390 -33.28816 -32.21204 -31.32104 -29.96961 -27.94864 -27.20809 -24.86579 -23.55236 -22.75079 -22.48982 -19.45470 -19.20600 -18.65290 -17.96550 -17.50041 -16.93010 -16.60211 -16.46129 -15.82412 -15.72141 -15.66494 -15.01310 -14.94322 -14.50973 -14.19877 -14.07252 -13.75151 -13.40535 -13.37830 -12.98120 -12.79407 -12.66691 -12.37510 -12.12086 -11.99695 -11.84380 -11.55843 -11.35311 -11.04294 -10.94304 -10.08211 -9.04049 -8.72375 -7.95736 -5.26538 0.25394 0.46097 1.47538 1.49117 1.59101 2.10074 2.43740 2.57060 2.73165 3.35621 3.49351 3.61307 3.82212 3.84110 3.97822 4.10604 4.15794 4.25337 4.35118 4.42314 4.43660 4.51051 4.53322 4.55361 4.76119 4.87546 4.91144 5.05985 5.16967 5.28270 5.33880 5.47091 5.58751 6.24543 6.33930 6.53470 6.83664 7.31339 8.05939 8.28472 9.28072 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.048971 B = 0.002851 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.625976 B = 9817.750720 C =10257.456884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.077 3.923 4 C -0.117 4.117 5 C -0.124 4.124 6 C 0.076 3.924 7 O -0.325 6.325 8 C 0.041 3.959 9 C 0.113 3.887 10 H 0.088 0.912 11 O -0.566 6.566 12 C 0.127 3.873 13 N -0.743 5.743 14 C -0.247 4.247 15 H 0.082 0.918 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.293 1.293 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.384 0.616 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.146 0.854 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -24.382 1.745 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.032 3.968 4 C -0.136 4.136 5 C -0.142 4.142 6 C 0.032 3.968 7 O -0.239 6.239 8 C -0.034 4.034 9 C 0.053 3.947 10 H 0.106 0.894 11 O -0.373 6.373 12 C 0.001 3.999 13 N -0.387 5.387 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.621 5.621 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.221 1.221 22 C -0.193 4.193 23 C -0.186 4.186 24 H 0.136 0.864 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.233 0.767 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.206 0.794 35 H 0.060 0.940 36 H 0.164 0.836 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.341 -24.439 1.330 26.975 hybrid contribution -0.545 1.313 0.184 1.434 sum -11.886 -23.125 1.514 26.045 Atomic orbital electron populations 1.23316 0.76712 1.05501 1.02100 1.86048 1.23196 1.26418 1.89279 1.19087 0.92583 0.84810 1.00323 1.20431 0.91811 0.98021 1.03332 1.20452 1.00857 0.89210 1.03719 1.19236 0.91906 0.85568 1.00125 1.86125 1.36376 1.12335 1.89093 1.23465 0.93193 0.83072 1.03701 1.21949 0.93713 0.91020 0.88014 0.89435 1.86613 1.38020 1.96637 1.16020 1.21361 0.93213 0.85825 0.99547 1.42482 1.05570 1.02123 1.88476 1.19704 0.92145 0.85210 1.40758 0.90052 1.25681 0.95958 1.01964 1.03557 1.69867 1.04216 1.29075 1.58963 0.85003 0.78170 0.79481 0.76643 1.18611 1.22091 1.22065 1.21304 0.92976 0.99544 1.05517 1.21289 1.01214 0.91062 1.05058 0.86372 0.91878 0.91910 0.83121 0.83976 0.89605 0.89525 0.76715 0.94300 0.94120 0.79354 0.93987 0.83634 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.02 10.50 -93.39 -0.98 -7.00 16 3 C 0.08 1.53 6.69 22.49 0.15 1.68 16 4 C -0.12 -2.37 9.98 22.35 0.22 -2.15 16 5 C -0.12 -2.81 9.98 22.36 0.22 -2.59 16 6 C 0.08 1.90 6.69 22.49 0.15 2.05 16 7 O -0.32 -9.23 10.10 -88.72 -0.90 -10.12 16 8 C 0.04 1.02 4.37 71.98 0.31 1.34 16 9 C 0.11 3.69 3.28 30.59 0.10 3.79 16 10 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 11 O -0.57 -20.00 13.25 -144.34 -1.91 -21.91 16 12 C 0.13 4.78 5.90 86.38 0.51 5.29 16 13 N -0.74 -38.17 5.55 -343.46 -1.91 -40.07 16 14 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 15 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 16 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 17 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 18 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C -0.17 -3.59 9.03 22.35 0.20 -3.39 16 23 C -0.17 -3.04 9.03 22.35 0.20 -2.83 16 24 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 26 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 27 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.09 1.73 7.65 -2.39 -0.02 1.72 16 30 H 0.09 1.85 7.67 -2.39 -0.02 1.83 16 31 H 0.38 10.54 9.04 -74.06 -0.67 9.87 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.37 21.23 7.67 -92.71 -0.71 20.52 16 35 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.15 2.46 6.29 -2.91 -0.02 2.44 16 37 H 0.15 1.91 6.29 -2.91 -0.02 1.89 16 Total: -1.00 -72.04 318.35 0.82 -71.22 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.29 Total: 32.87 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.49 Total: -12.58 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -1.62 Total: -100.63 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -3.79 Total: -39.03 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.04 0.82 -71.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252730734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.634 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds