Wall clock time and date at job start Mon Mar 30 2020 00:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47497 * 2 1 4 4 C 1.50699 * 109.46934 * 239.99946 * 2 1 3 5 5 H 1.08000 * 119.99687 * 240.00231 * 4 2 1 6 6 C 1.37865 * 120.00040 * 60.00176 * 4 2 1 7 7 N 1.31515 * 120.00374 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46965 * 59.99598 * 8 6 4 10 10 H 1.48490 * 109.47704 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 300.00436 * 8 6 4 12 12 C 1.50704 * 109.46890 * 120.00023 * 2 1 3 13 13 O 1.21282 * 120.00231 * 119.99637 * 12 2 1 14 14 N 1.34778 * 119.99940 * 299.99873 * 12 2 1 15 15 C 1.47527 * 125.67280 * 0.04155 * 14 12 2 16 16 C 1.55134 * 104.97162 * 203.87738 * 15 14 12 17 17 C 1.53944 * 101.45511 * 324.20661 * 16 15 14 18 18 C 1.53482 * 110.98566 * 273.82436 * 17 16 15 19 19 C 1.54863 * 101.64776 * 253.13058 * 18 17 16 20 20 O 1.45973 * 104.64165 * 334.15399 * 19 18 17 21 21 C 1.34497 * 109.93061 * 29.78910 * 20 19 18 22 22 O 1.20829 * 125.35183 * 159.60837 * 21 20 19 23 23 C 1.47328 * 125.66886 * 179.97438 * 14 12 2 24 24 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47067 * 300.00041 * 1 2 3 26 26 H 1.08999 * 109.46840 * 59.99618 * 1 2 3 27 27 H 0.96999 * 119.99958 * 179.97438 * 7 6 4 28 28 H 1.09008 * 110.34335 * 322.75101 * 15 14 12 29 29 H 1.08997 * 110.34365 * 85.00173 * 15 14 12 30 30 H 1.09001 * 111.02702 * 206.16336 * 16 15 14 31 31 H 1.08995 * 111.02704 * 82.25228 * 16 15 14 32 32 H 1.09005 * 110.94920 * 135.08108 * 18 17 16 33 33 H 1.08998 * 111.08419 * 11.24167 * 18 17 16 34 34 H 1.09002 * 110.42485 * 215.33032 * 19 18 17 35 35 H 1.09000 * 110.42265 * 92.97858 * 19 18 17 36 36 H 1.09005 * 109.97006 * 58.76164 * 23 14 12 37 37 H 1.09001 * 110.00327 * 297.52021 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 0.8697 0.9323 2.7345 16 6 1.2880 1.3920 4.1559 17 6 1.5581 0.0429 4.8464 18 6 0.2662 -0.5427 5.4329 19 6 0.4824 -0.3195 6.9501 20 8 1.9323 -0.2853 7.1151 21 6 2.5099 0.1903 5.9974 22 8 3.6206 0.6613 5.9305 23 6 2.1263 -0.8444 3.7357 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1612 -3.4844 28 1 1.0703 1.7193 2.0074 29 1 -0.1859 0.6614 2.7192 30 1 0.4765 1.9279 4.6482 31 1 2.1914 2.0008 4.1199 32 1 0.1803 -1.6048 5.2031 33 1 -0.6080 0.0036 5.0788 34 1 0.0540 -1.1436 7.5206 35 1 0.0416 0.6274 7.2618 36 1 3.2144 -0.8664 3.7972 37 1 1.7280 -1.8550 3.8260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262667708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:33 Heat of formation + Delta-G solvation = -111.652180 kcal Electronic energy + Delta-G solvation = -21019.449493 eV Core-core repulsion = 17762.071117 eV Total energy + Delta-G solvation = -3257.378376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69388 -39.17256 -37.65379 -36.92189 -33.84338 -32.86034 -30.58034 -29.88797 -28.79886 -25.26375 -25.11504 -23.67363 -22.35787 -21.72505 -20.04353 -18.87770 -17.21598 -16.95803 -16.40558 -16.30629 -15.50146 -15.35027 -15.05720 -14.64760 -14.26344 -14.00861 -13.52350 -13.14509 -12.92034 -12.71826 -12.54664 -12.17228 -12.10791 -11.89738 -11.44807 -11.33468 -10.99678 -10.94670 -10.81968 -10.75448 -10.58741 -10.28337 -10.20549 -9.97168 -8.99520 -8.67128 -8.34428 -8.17032 -6.04394 -4.07537 1.81449 2.94063 3.36277 3.38402 3.39630 3.47029 3.62386 3.79579 3.92219 4.08499 4.41585 4.46767 4.53809 4.71301 5.04387 5.10556 5.22569 5.29060 5.34669 5.44916 5.57702 5.67062 5.76932 5.85052 5.96493 6.07716 6.45556 6.57864 6.71340 6.83181 6.93814 7.26417 7.45122 7.72580 7.97100 8.09293 8.36018 9.00639 9.15239 9.57958 11.03193 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.004538 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.214994 B = 6168.140792 C = 6376.817739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.537 3.463 13 O -0.541 6.541 14 N -0.630 5.630 15 C 0.109 3.891 16 C -0.114 4.114 17 C -0.143 4.143 18 C -0.143 4.143 19 C 0.054 3.946 20 O -0.348 6.348 21 C 0.501 3.499 22 O -0.442 6.442 23 C 0.133 3.867 24 H 0.029 0.971 25 H 0.019 0.981 26 H 0.093 0.907 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 1.840 17.404 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.070 0.930 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.329 3.671 13 O -0.416 6.416 14 N -0.368 5.368 15 C -0.014 4.014 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.180 4.180 19 C -0.020 4.020 20 O -0.265 6.265 21 C 0.340 3.660 22 O -0.324 6.324 23 C 0.010 3.990 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.895 1.527 17.246 18.290 hybrid contribution 0.131 -0.400 -0.804 0.908 sum -5.764 1.127 16.442 17.459 Atomic orbital electron populations 1.21868 0.96494 0.99888 1.01301 1.18833 0.94249 0.96695 0.88695 0.92981 1.21106 1.31092 1.12888 0.88987 0.90873 1.24928 0.95062 0.95060 0.99068 1.69855 1.37047 1.23067 1.23658 0.86498 0.79343 0.79698 0.81568 1.20191 1.21346 1.20165 1.21906 0.78232 0.84123 0.82843 1.90552 1.38122 1.27087 1.85814 1.48899 1.53231 1.29900 1.04797 1.22380 0.95043 0.88871 0.95089 1.22776 1.03278 0.93549 0.95624 1.22222 0.96102 1.00085 0.96171 1.23039 0.97192 1.03800 0.93998 1.24217 0.76494 1.04079 0.97244 1.87154 1.22671 1.76797 1.39910 1.22420 0.86579 0.73389 0.83606 1.90735 1.19022 1.38042 1.84552 1.21464 1.00076 0.95419 0.82070 0.95148 0.96191 0.88844 0.92896 0.89363 0.91002 0.89134 0.89337 0.88557 0.87774 0.87047 0.89488 0.91093 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.78 37.16 0.33 -2.74 16 2 C 0.04 0.90 1.99 -92.92 -0.19 0.71 16 3 H 0.05 1.34 7.85 -51.93 -0.41 0.93 16 4 C -0.50 -14.28 8.37 -34.45 -0.29 -14.57 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.90 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.54 12.48 7.21 -10.98 -0.08 12.40 16 13 O -0.54 -14.50 15.79 5.56 0.09 -14.41 16 14 N -0.63 -11.21 3.33 -170.80 -0.57 -11.78 16 15 C 0.11 1.47 5.05 -2.35 -0.01 1.45 16 16 C -0.11 -1.20 5.91 -25.11 -0.15 -1.35 16 17 C -0.14 -1.60 0.76 -155.17 -0.12 -1.72 16 18 C -0.14 -1.03 6.28 -25.50 -0.16 -1.19 16 19 C 0.05 0.33 7.92 38.14 0.30 0.63 16 20 O -0.35 -3.86 11.08 -39.60 -0.44 -4.30 16 21 C 0.50 6.56 7.23 35.71 0.26 6.81 16 22 O -0.44 -7.41 17.84 -18.37 -0.33 -7.74 16 23 C 0.13 2.02 6.12 -3.54 -0.02 2.00 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.35 4.99 -51.93 -0.26 0.09 16 26 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 1.26 7.38 -51.92 -0.38 0.87 16 29 H 0.07 0.85 7.06 -51.93 -0.37 0.48 16 30 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 31 H 0.09 1.05 7.99 -51.93 -0.41 0.63 16 32 H 0.10 0.69 7.42 -51.93 -0.39 0.30 16 33 H 0.10 0.56 7.69 -51.93 -0.40 0.16 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 37 H 0.07 1.05 7.39 -51.93 -0.38 0.67 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -34.07 300.15 -6.23 -40.30 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.89 Total: -3.12 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.22 Total: 4.00 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.06 Total: -36.05 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.68 Total: -26.45 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.07 -6.23 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262667708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.353 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds