Wall clock time and date at job start Mon Mar 30 2020 00:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47497 * 2 1 4 4 C 1.50699 * 109.46934 * 239.99946 * 2 1 3 5 5 H 1.08000 * 119.99687 * 240.00231 * 4 2 1 6 6 C 1.37865 * 120.00040 * 60.00176 * 4 2 1 7 7 N 1.31515 * 120.00374 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46965 * 59.99598 * 8 6 4 10 10 H 1.48490 * 109.47704 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 300.00436 * 8 6 4 12 12 C 1.50704 * 109.46890 * 120.00023 * 2 1 3 13 13 O 1.21282 * 120.00231 * 119.99637 * 12 2 1 14 14 N 1.34778 * 119.99940 * 299.99873 * 12 2 1 15 15 C 1.47527 * 125.67280 * 0.04155 * 14 12 2 16 16 C 1.55134 * 104.97162 * 203.87738 * 15 14 12 17 17 C 1.53944 * 101.45511 * 324.20661 * 16 15 14 18 18 C 1.53482 * 110.98566 * 273.82436 * 17 16 15 19 19 C 1.54863 * 101.64776 * 253.13058 * 18 17 16 20 20 O 1.45973 * 104.64165 * 334.15399 * 19 18 17 21 21 C 1.34497 * 109.93061 * 29.78910 * 20 19 18 22 22 O 1.20829 * 125.35183 * 159.60837 * 21 20 19 23 23 C 1.47328 * 125.66886 * 179.97438 * 14 12 2 24 24 H 1.08998 * 109.47497 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47067 * 300.00041 * 1 2 3 26 26 H 1.08999 * 109.46840 * 59.99618 * 1 2 3 27 27 H 0.96999 * 119.99958 * 179.97438 * 7 6 4 28 28 H 1.09008 * 110.34335 * 322.75101 * 15 14 12 29 29 H 1.08997 * 110.34365 * 85.00173 * 15 14 12 30 30 H 1.09001 * 111.02702 * 206.16336 * 16 15 14 31 31 H 1.08995 * 111.02704 * 82.25228 * 16 15 14 32 32 H 1.09005 * 110.94920 * 135.08108 * 18 17 16 33 33 H 1.08998 * 111.08419 * 11.24167 * 18 17 16 34 34 H 1.09002 * 110.42485 * 215.33032 * 19 18 17 35 35 H 1.09000 * 110.42265 * 92.97858 * 19 18 17 36 36 H 1.09005 * 109.97006 * 58.76164 * 23 14 12 37 37 H 1.09001 * 110.00327 * 297.52021 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 0.8697 0.9323 2.7345 16 6 1.2880 1.3920 4.1559 17 6 1.5581 0.0429 4.8464 18 6 0.2662 -0.5427 5.4329 19 6 0.4824 -0.3195 6.9501 20 8 1.9323 -0.2853 7.1151 21 6 2.5099 0.1903 5.9974 22 8 3.6206 0.6613 5.9305 23 6 2.1263 -0.8444 3.7357 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1612 -3.4844 28 1 1.0703 1.7193 2.0074 29 1 -0.1859 0.6614 2.7192 30 1 0.4765 1.9279 4.6482 31 1 2.1914 2.0008 4.1199 32 1 0.1803 -1.6048 5.2031 33 1 -0.6080 0.0036 5.0788 34 1 0.0540 -1.1436 7.5206 35 1 0.0416 0.6274 7.2618 36 1 3.2144 -0.8664 3.7972 37 1 1.7280 -1.8550 3.8260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262667708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:33 Heat of formation + Delta-G solvation = -135.047155 kcal Electronic energy + Delta-G solvation = -21020.463975 eV Core-core repulsion = 17762.071117 eV Total energy + Delta-G solvation = -3258.392858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.63510 -40.69212 -38.68621 -38.30591 -35.84819 -34.11182 -32.38417 -30.90405 -29.82128 -27.23060 -26.46099 -24.67689 -23.58256 -23.02170 -20.99704 -20.43023 -18.40837 -18.09609 -18.04651 -17.49083 -16.89495 -16.75752 -16.62728 -16.03364 -15.48555 -15.18785 -14.83168 -14.45828 -14.40414 -13.93871 -13.78178 -13.50790 -13.19010 -13.02130 -12.92881 -12.81784 -12.70865 -12.39907 -12.29929 -12.21195 -12.01745 -11.85769 -11.41255 -11.22466 -11.03559 -10.63765 -10.35528 -9.65443 -8.16280 -6.26675 0.82191 1.40432 1.41796 1.50336 1.83045 1.94654 2.27856 2.45171 2.81093 3.13112 3.17242 3.21017 3.63768 3.79077 4.13596 4.14463 4.21017 4.30470 4.50119 4.55243 4.67497 4.72935 4.79034 4.81382 4.92712 4.96472 4.98653 5.03622 5.11075 5.36453 5.50156 5.67573 5.73350 5.95088 6.20606 6.28833 6.57499 6.80879 7.35066 7.44005 8.89209 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.004538 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.214994 B = 6168.140792 C = 6376.817739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.034 3.966 3 H 0.038 0.962 4 C -0.535 4.535 5 H 0.044 0.956 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.533 3.467 13 O -0.591 6.591 14 N -0.625 5.625 15 C 0.098 3.902 16 C -0.103 4.103 17 C -0.134 4.134 18 C -0.135 4.135 19 C 0.051 3.949 20 O -0.361 6.361 21 C 0.504 3.496 22 O -0.493 6.493 23 C 0.129 3.871 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.038 0.962 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 2.554 18.974 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.013 3.987 3 H 0.056 0.944 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.206 1.206 12 C 0.325 3.675 13 O -0.471 6.471 14 N -0.360 5.360 15 C -0.024 4.024 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.172 4.172 19 C -0.022 4.022 20 O -0.278 6.278 21 C 0.345 3.655 22 O -0.378 6.378 23 C 0.006 3.994 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.056 0.944 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.740 2.277 18.869 20.919 hybrid contribution 0.978 -0.611 -1.205 1.667 sum -7.763 1.666 17.664 19.366 Atomic orbital electron populations 1.21671 0.94341 0.99551 1.02404 1.18735 0.95938 0.95424 0.88626 0.94394 1.21249 1.31892 1.12847 0.91299 0.93760 1.25537 0.95113 0.95734 1.01202 1.69922 1.36926 1.23342 1.24439 0.85682 0.78532 0.78850 0.78986 1.20102 1.19600 1.20552 1.21532 0.78066 0.83602 0.84337 1.90514 1.40429 1.29258 1.86927 1.48731 1.52447 1.30741 1.04078 1.22761 0.95923 0.86921 0.96762 1.22810 1.04301 0.93159 0.93765 1.22171 0.97536 0.99790 0.94111 1.23142 0.95611 1.04177 0.94273 1.24692 0.73613 1.07038 0.96843 1.87142 1.25670 1.75814 1.39180 1.22676 0.86029 0.72241 0.84591 1.90705 1.21203 1.40508 1.85431 1.21578 0.98584 0.96931 0.82340 0.96031 0.91659 0.91043 0.92472 0.90275 0.87779 0.83972 0.91221 0.88382 0.84460 0.84308 0.86470 0.94351 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.78 71.98 0.63 -4.71 16 2 C 0.03 1.71 1.99 -12.28 -0.02 1.69 16 3 H 0.04 2.01 7.85 -2.39 -0.02 1.99 16 4 C -0.53 -31.45 8.37 25.60 0.21 -31.23 16 5 H 0.04 2.81 6.75 -2.91 -0.02 2.79 16 6 C 0.02 1.33 5.30 84.65 0.45 1.78 16 7 N -0.91 -50.41 11.32 21.44 0.24 -50.17 16 8 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.53 25.49 7.21 87.66 0.63 26.12 16 13 O -0.59 -33.36 15.79 -3.04 -0.05 -33.41 16 14 N -0.62 -22.01 3.33 -812.67 -2.71 -24.72 16 15 C 0.10 2.35 5.05 86.91 0.44 2.79 16 16 C -0.10 -1.82 5.91 31.64 0.19 -1.64 16 17 C -0.13 -2.66 0.76 -52.61 -0.04 -2.70 16 18 C -0.14 -1.28 6.28 31.39 0.20 -1.08 16 19 C 0.05 0.37 7.92 72.62 0.58 0.95 16 20 O -0.36 -7.11 11.08 -54.38 -0.60 -7.71 16 21 C 0.50 12.62 7.23 71.04 0.51 13.14 16 22 O -0.49 -16.93 17.84 21.59 0.39 -16.55 16 23 C 0.13 3.89 6.12 86.25 0.53 4.42 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 2.19 4.99 -2.38 -0.01 2.17 16 26 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 27 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.08 2.11 7.38 -2.38 -0.02 2.09 16 29 H 0.10 1.91 7.06 -2.39 -0.02 1.90 16 30 H 0.14 1.14 7.87 -2.39 -0.02 1.12 16 31 H 0.07 1.55 7.99 -2.39 -0.02 1.53 16 32 H 0.10 0.98 7.42 -2.38 -0.02 0.96 16 33 H 0.14 0.49 7.69 -2.39 -0.02 0.47 16 34 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.04 1.40 7.82 -2.38 -0.02 1.38 16 37 H 0.08 2.28 7.39 -2.39 -0.02 2.26 16 Total: -1.00 -79.93 300.15 4.68 -75.25 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.08 Total: 0.57 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 4.30 Total: 9.53 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -2.47 Total: -74.89 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -0.27 Total: -57.67 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -79.93 4.68 -75.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262667708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.793 kcal (2) G-P(sol) polarization free energy of solvation -79.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds