Wall clock time and date at job start Mon Mar 30 2020 00:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47364 * 2 1 4 4 C 1.50703 * 109.47253 * 240.00375 * 2 1 3 5 5 H 1.07998 * 120.00026 * 239.99897 * 4 2 1 6 6 C 1.37876 * 120.00071 * 59.99797 * 4 2 1 7 7 N 1.31513 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00142 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46710 * 90.00088 * 8 6 4 10 10 H 1.48498 * 109.47181 * 210.00084 * 8 6 4 11 11 H 1.48497 * 109.46770 * 330.00136 * 8 6 4 12 12 C 1.50696 * 109.47300 * 120.00217 * 2 1 3 13 13 O 1.21280 * 119.99847 * 85.26795 * 12 2 1 14 14 N 1.34776 * 120.00191 * 264.99069 * 12 2 1 15 15 C 1.47531 * 125.67253 * 175.22990 * 14 12 2 16 16 C 1.55388 * 104.84158 * 155.98812 * 15 14 12 17 17 C 1.53944 * 101.34775 * 36.12834 * 16 15 14 18 18 C 1.53304 * 111.07834 * 85.96347 * 17 16 15 19 19 C 1.54862 * 101.73358 * 106.71823 * 18 17 16 20 20 O 1.45967 * 104.53293 * 25.98633 * 19 18 17 21 21 C 1.34490 * 109.94298 * 330.16475 * 20 19 18 22 22 O 1.20824 * 125.36036 * 200.37818 * 21 20 19 23 23 C 1.47335 * 125.66725 * 355.54504 * 14 12 2 24 24 H 1.08997 * 109.47021 * 173.61387 * 1 2 3 25 25 H 1.08996 * 109.47298 * 293.61743 * 1 2 3 26 26 H 1.09000 * 109.46988 * 53.61496 * 1 2 3 27 27 H 0.97000 * 120.00425 * 179.97438 * 7 6 4 28 28 H 1.08995 * 110.34101 * 274.96847 * 15 14 12 29 29 H 1.09001 * 110.33759 * 37.22525 * 15 14 12 30 30 H 1.08995 * 111.24593 * 278.04207 * 16 15 14 31 31 H 1.09005 * 110.90463 * 154.05939 * 16 15 14 32 32 H 1.09003 * 110.96948 * 224.82760 * 18 17 16 33 33 H 1.08993 * 110.97597 * 348.60468 * 18 17 16 34 34 H 1.09002 * 110.42148 * 267.22611 * 19 18 17 35 35 H 1.08993 * 110.52496 * 144.80180 * 19 18 17 36 36 H 1.09001 * 109.96907 * 301.26236 * 23 14 12 37 37 H 1.09003 * 109.97274 * 62.48630 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0081 9 1 1.3449 -2.1613 -4.4125 10 1 2.4873 -0.1399 -5.1121 11 1 3.6309 -1.7563 -3.7120 12 6 2.0323 -0.7104 1.2304 13 8 2.1528 -1.9172 1.2271 14 7 2.3531 -0.0042 2.3326 15 6 2.7599 -0.5739 3.6313 16 6 3.5846 0.5497 4.3180 17 6 2.8260 1.8073 3.8568 18 6 1.6490 2.1145 4.7899 19 6 2.1732 3.3505 5.5616 20 8 3.1383 3.9658 4.6557 21 6 3.7045 3.0241 3.8802 22 8 4.7548 3.1395 3.2942 23 6 2.3495 1.4650 2.4428 24 1 -0.3633 -1.0213 -0.1143 25 1 -0.3634 0.4117 0.9415 26 1 -0.3633 0.6096 -0.8273 27 1 0.7095 1.1620 -3.4844 28 1 1.8820 -0.8219 4.2278 29 1 3.3784 -1.4586 3.4798 30 1 4.6137 0.5600 3.9590 31 1 3.5515 0.4488 5.4029 32 1 0.7534 2.3613 4.2197 33 1 1.4611 1.2820 5.4678 34 1 2.6619 3.0426 6.4860 35 1 1.3579 4.0416 5.7752 36 1 3.0287 1.8952 1.7067 37 1 1.3408 1.8476 2.2865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262667711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:38 Heat of formation + Delta-G solvation = -114.871611 kcal Electronic energy + Delta-G solvation = -21090.697368 eV Core-core repulsion = 17833.179387 eV Total energy + Delta-G solvation = -3257.517981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65846 -39.12023 -37.60070 -36.93729 -33.75092 -32.76097 -30.82128 -29.61274 -28.89501 -25.20345 -24.99241 -23.87173 -22.58394 -21.38370 -20.08278 -18.72208 -17.16879 -16.99065 -16.56047 -16.09505 -15.75097 -15.46110 -14.85683 -14.48081 -14.22720 -13.93341 -13.58635 -13.06716 -12.90001 -12.66282 -12.48364 -12.18227 -12.07840 -11.82285 -11.49362 -11.36875 -11.03641 -10.97401 -10.78041 -10.70847 -10.65090 -10.29313 -10.19047 -10.04522 -9.02637 -8.65423 -8.36397 -8.16261 -6.05266 -4.08789 1.87146 2.98844 3.33728 3.38908 3.42048 3.47495 3.61207 3.80907 3.95061 4.11154 4.43696 4.47214 4.53944 4.74116 5.06011 5.12548 5.21704 5.28403 5.36447 5.46052 5.58336 5.67360 5.79539 5.85485 5.98566 6.05367 6.50709 6.61654 6.78508 6.83527 6.97604 7.32220 7.45021 7.73246 7.94944 8.06775 8.33743 8.94982 9.13514 9.55888 11.02591 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.005206 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.983923 B = 5377.142161 C = 5639.045185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.035 3.965 3 H 0.044 0.956 4 C -0.502 4.502 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.541 3.459 13 O -0.544 6.544 14 N -0.631 5.631 15 C 0.107 3.893 16 C -0.111 4.111 17 C -0.144 4.144 18 C -0.144 4.144 19 C 0.054 3.946 20 O -0.347 6.347 21 C 0.501 3.499 22 O -0.439 6.439 23 C 0.134 3.866 24 H 0.037 0.963 25 H 0.009 0.991 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 5.334 18.122 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.334 3.666 13 O -0.419 6.419 14 N -0.369 5.369 15 C -0.017 4.017 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.181 4.181 19 C -0.020 4.020 20 O -0.264 6.264 21 C 0.340 3.660 22 O -0.321 6.321 23 C 0.010 3.990 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.060 5.009 17.591 18.290 hybrid contribution 0.178 -0.403 -0.725 0.849 sum 0.238 4.605 16.866 17.485 Atomic orbital electron populations 1.21654 0.95968 1.01172 0.99480 1.18888 0.94314 0.96562 0.88876 0.93784 1.21002 1.31497 1.12443 0.89090 0.91526 1.24925 0.95008 0.94992 0.99072 1.69876 1.36898 1.22872 1.23656 0.86436 0.79431 0.79265 0.82004 1.20546 1.21196 1.19782 1.21858 0.74433 0.87527 0.82770 1.90547 1.53506 1.15120 1.82742 1.48903 1.70670 1.05721 1.11639 1.22186 0.97831 0.96584 0.85056 1.22746 0.99919 0.91423 1.00803 1.22213 0.96730 0.96441 0.99267 1.23011 0.97782 0.98672 0.98621 1.24207 0.91100 0.95142 0.91550 1.87158 1.53984 1.36381 1.48896 1.22387 0.84082 0.83087 0.76478 1.90744 1.19736 1.79595 1.41990 1.21611 1.01950 0.82842 0.92554 0.94371 0.97233 0.89082 0.92855 0.91814 0.90176 0.89328 0.89352 0.88333 0.88011 0.89634 0.86983 0.90209 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.86 37.16 0.33 -2.64 16 2 C 0.03 0.88 2.34 -92.93 -0.22 0.66 16 3 H 0.04 1.13 6.92 -51.92 -0.36 0.77 16 4 C -0.50 -14.40 8.31 -34.44 -0.29 -14.69 16 5 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.23 11.39 55.43 0.63 -24.60 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.54 12.68 6.83 -10.99 -0.08 12.61 16 13 O -0.54 -14.39 16.34 5.56 0.09 -14.30 16 14 N -0.63 -11.43 3.34 -170.64 -0.57 -11.99 16 15 C 0.11 1.48 6.85 -2.21 -0.02 1.46 16 16 C -0.11 -1.20 5.92 -24.97 -0.15 -1.34 16 17 C -0.14 -1.64 0.75 -155.26 -0.12 -1.76 16 18 C -0.14 -1.04 6.26 -25.59 -0.16 -1.20 16 19 C 0.05 0.34 7.93 38.14 0.30 0.65 16 20 O -0.35 -3.97 11.08 -39.58 -0.44 -4.40 16 21 C 0.50 6.74 7.23 35.71 0.26 7.00 16 22 O -0.44 -7.59 17.84 -18.36 -0.33 -7.91 16 23 C 0.13 2.05 5.27 -3.54 -0.02 2.03 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 2.32 6.27 -51.93 -0.33 1.99 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 30 H 0.09 1.09 7.99 -51.93 -0.42 0.67 16 31 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 32 H 0.10 0.71 7.41 -51.93 -0.39 0.32 16 33 H 0.10 0.55 7.68 -51.93 -0.40 0.15 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.39 7.55 -51.93 -0.39 1.00 16 37 H 0.08 1.13 7.39 -51.93 -0.38 0.75 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -34.34 306.05 -6.38 -40.71 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.11 Total: -3.45 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.24 Total: 4.39 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.06 Total: -36.59 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.68 Total: -26.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.34 -6.38 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262667711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.157 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds