Wall clock time and date at job start Mon Mar 30 2020 00:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47364 * 2 1 4 4 C 1.50703 * 109.47253 * 240.00375 * 2 1 3 5 5 H 1.07998 * 120.00026 * 239.99897 * 4 2 1 6 6 C 1.37876 * 120.00071 * 59.99797 * 4 2 1 7 7 N 1.31513 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00142 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46710 * 90.00088 * 8 6 4 10 10 H 1.48498 * 109.47181 * 210.00084 * 8 6 4 11 11 H 1.48497 * 109.46770 * 330.00136 * 8 6 4 12 12 C 1.50696 * 109.47300 * 120.00217 * 2 1 3 13 13 O 1.21280 * 119.99847 * 85.26795 * 12 2 1 14 14 N 1.34776 * 120.00191 * 264.99069 * 12 2 1 15 15 C 1.47531 * 125.67253 * 175.22990 * 14 12 2 16 16 C 1.55388 * 104.84158 * 155.98812 * 15 14 12 17 17 C 1.53944 * 101.34775 * 36.12834 * 16 15 14 18 18 C 1.53304 * 111.07834 * 85.96347 * 17 16 15 19 19 C 1.54862 * 101.73358 * 106.71823 * 18 17 16 20 20 O 1.45967 * 104.53293 * 25.98633 * 19 18 17 21 21 C 1.34490 * 109.94298 * 330.16475 * 20 19 18 22 22 O 1.20824 * 125.36036 * 200.37818 * 21 20 19 23 23 C 1.47335 * 125.66725 * 355.54504 * 14 12 2 24 24 H 1.08997 * 109.47021 * 173.61387 * 1 2 3 25 25 H 1.08996 * 109.47298 * 293.61743 * 1 2 3 26 26 H 1.09000 * 109.46988 * 53.61496 * 1 2 3 27 27 H 0.97000 * 120.00425 * 179.97438 * 7 6 4 28 28 H 1.08995 * 110.34101 * 274.96847 * 15 14 12 29 29 H 1.09001 * 110.33759 * 37.22525 * 15 14 12 30 30 H 1.08995 * 111.24593 * 278.04207 * 16 15 14 31 31 H 1.09005 * 110.90463 * 154.05939 * 16 15 14 32 32 H 1.09003 * 110.96948 * 224.82760 * 18 17 16 33 33 H 1.08993 * 110.97597 * 348.60468 * 18 17 16 34 34 H 1.09002 * 110.42148 * 267.22611 * 19 18 17 35 35 H 1.08993 * 110.52496 * 144.80180 * 19 18 17 36 36 H 1.09001 * 109.96907 * 301.26236 * 23 14 12 37 37 H 1.09003 * 109.97274 * 62.48630 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0081 9 1 1.3449 -2.1613 -4.4125 10 1 2.4873 -0.1399 -5.1121 11 1 3.6309 -1.7563 -3.7120 12 6 2.0323 -0.7104 1.2304 13 8 2.1528 -1.9172 1.2271 14 7 2.3531 -0.0042 2.3326 15 6 2.7599 -0.5739 3.6313 16 6 3.5846 0.5497 4.3180 17 6 2.8260 1.8073 3.8568 18 6 1.6490 2.1145 4.7899 19 6 2.1732 3.3505 5.5616 20 8 3.1383 3.9658 4.6557 21 6 3.7045 3.0241 3.8802 22 8 4.7548 3.1395 3.2942 23 6 2.3495 1.4650 2.4428 24 1 -0.3633 -1.0213 -0.1143 25 1 -0.3634 0.4117 0.9415 26 1 -0.3633 0.6096 -0.8273 27 1 0.7095 1.1620 -3.4844 28 1 1.8820 -0.8219 4.2278 29 1 3.3784 -1.4586 3.4798 30 1 4.6137 0.5600 3.9590 31 1 3.5515 0.4488 5.4029 32 1 0.7534 2.3613 4.2197 33 1 1.4611 1.2820 5.4678 34 1 2.6619 3.0426 6.4860 35 1 1.3579 4.0416 5.7752 36 1 3.0287 1.8952 1.7067 37 1 1.3408 1.8476 2.2865 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262667711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:38 Heat of formation + Delta-G solvation = -138.222143 kcal Electronic energy + Delta-G solvation = -21091.709923 eV Core-core repulsion = 17833.179387 eV Total energy + Delta-G solvation = -3258.530536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.62025 -40.66392 -38.66746 -38.32162 -35.82355 -33.95686 -32.60823 -30.85095 -29.84416 -27.32233 -26.25604 -25.05705 -23.65789 -22.75320 -21.06314 -20.30186 -18.48823 -18.21547 -18.02440 -17.46679 -17.18688 -16.69467 -16.47062 -15.85359 -15.40052 -15.29955 -14.70099 -14.65627 -14.33917 -13.96388 -13.75588 -13.54059 -13.16590 -13.00491 -12.94712 -12.81523 -12.65299 -12.64743 -12.41574 -12.25768 -12.11881 -11.87527 -11.39349 -11.21790 -11.11945 -10.65564 -10.38824 -9.66048 -8.20519 -6.31746 0.85048 1.38361 1.38715 1.49910 1.80494 1.96582 2.28531 2.42440 2.80723 3.09301 3.18874 3.21209 3.62520 3.80273 4.10681 4.12718 4.23809 4.28708 4.50154 4.55300 4.67912 4.71839 4.74950 4.77592 4.89129 4.91393 4.98026 5.00241 5.09159 5.31456 5.47449 5.66634 5.70323 5.86730 6.11900 6.31710 6.51118 6.72898 7.30776 7.40108 8.85879 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.005206 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.983923 B = 5377.142161 C = 5639.045185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.029 3.971 3 H 0.034 0.966 4 C -0.532 4.532 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.539 3.461 13 O -0.585 6.585 14 N -0.628 5.628 15 C 0.100 3.900 16 C -0.099 4.099 17 C -0.135 4.135 18 C -0.135 4.135 19 C 0.051 3.949 20 O -0.361 6.361 21 C 0.503 3.497 22 O -0.493 6.493 23 C 0.128 3.872 24 H 0.022 0.978 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.267 0.733 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 5.912 20.660 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.008 3.992 3 H 0.052 0.948 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.331 3.669 13 O -0.465 6.465 14 N -0.363 5.363 15 C -0.022 4.022 16 C -0.136 4.136 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.022 4.022 20 O -0.278 6.278 21 C 0.344 3.656 22 O -0.378 6.378 23 C 0.004 3.996 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.065 0.935 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.075 5.638 20.192 20.992 hybrid contribution 0.506 -0.502 -1.444 1.610 sum -0.569 5.136 18.748 19.447 Atomic orbital electron populations 1.21452 0.94849 0.99994 1.00610 1.18808 0.95325 0.95681 0.89361 0.94832 1.21154 1.32256 1.12383 0.91259 0.94097 1.25602 0.95041 0.95672 1.01445 1.69947 1.36930 1.23327 1.24528 0.85567 0.78663 0.78585 0.78934 1.19758 1.19723 1.20315 1.21313 0.74891 0.86940 0.83742 1.90512 1.55705 1.16548 1.83735 1.48729 1.68562 1.07077 1.11921 1.22533 0.99419 0.96939 0.83271 1.22771 0.97990 0.89447 1.03438 1.22165 0.98252 0.95740 0.97555 1.23116 0.95715 1.00251 0.98119 1.24693 0.91127 0.95183 0.91192 1.87144 1.54780 1.36663 1.49166 1.22671 0.83479 0.83722 0.75724 1.90713 1.22223 1.80743 1.44117 1.21754 1.02143 0.80880 0.94779 0.95880 0.93653 0.90894 0.92392 0.88465 0.91892 0.91476 0.84160 0.87896 0.84682 0.86641 0.84200 0.93521 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 8.86 71.98 0.64 -4.69 16 2 C 0.03 1.54 2.34 -12.29 -0.03 1.51 16 3 H 0.03 1.80 6.92 -2.38 -0.02 1.78 16 4 C -0.53 -31.69 8.31 25.60 0.21 -31.48 16 5 H 0.04 2.59 7.25 -2.91 -0.02 2.57 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -51.87 11.39 21.45 0.24 -51.62 16 8 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 C 0.54 25.87 6.83 87.66 0.60 26.47 16 13 O -0.59 -31.99 16.34 -3.03 -0.05 -32.04 16 14 N -0.63 -22.54 3.34 -812.16 -2.71 -25.25 16 15 C 0.10 2.57 6.85 87.00 0.60 3.17 16 16 C -0.10 -1.85 5.92 31.73 0.19 -1.66 16 17 C -0.13 -2.74 0.75 -52.67 -0.04 -2.78 16 18 C -0.14 -1.29 6.26 31.33 0.20 -1.09 16 19 C 0.05 0.39 7.93 72.62 0.58 0.96 16 20 O -0.36 -7.34 11.08 -54.31 -0.60 -7.94 16 21 C 0.50 13.02 7.23 71.05 0.51 13.53 16 22 O -0.49 -17.49 17.84 21.60 0.39 -17.11 16 23 C 0.13 3.83 5.27 86.25 0.45 4.28 16 24 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 3.76 6.27 -2.39 -0.01 3.74 16 27 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 30 H 0.07 1.59 7.99 -2.39 -0.02 1.57 16 31 H 0.14 1.24 7.87 -2.38 -0.02 1.22 16 32 H 0.10 0.98 7.41 -2.39 -0.02 0.96 16 33 H 0.14 0.50 7.68 -2.39 -0.02 0.48 16 34 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.05 1.71 7.55 -2.39 -0.02 1.69 16 37 H 0.09 2.53 7.39 -2.39 -0.02 2.51 16 Total: -1.00 -79.93 306.05 4.72 -75.21 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.07 Total: 1.14 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.35 Total: 9.93 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.47 Total: -76.88 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -0.27 Total: -57.09 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -79.93 4.72 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262667711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.014 kcal (2) G-P(sol) polarization free energy of solvation -79.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds