Wall clock time and date at job start Mon Mar 30 2020 00:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99916 * 2 1 4 4 N 1.34776 * 120.00515 * 179.97438 * 2 1 3 5 5 C 1.47574 * 134.49671 * 179.97438 * 4 2 1 6 6 C 1.53949 * 86.11466 * 155.35979 * 5 4 2 7 7 C 1.50709 * 113.73856 * 137.95538 * 6 5 4 8 8 O 1.20821 * 120.00117 * 1.92195 * 7 6 5 9 9 O 1.34226 * 119.99734 * 181.92691 * 7 6 5 10 10 C 1.45200 * 116.99763 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47097 * 29.99851 * 10 9 7 12 12 C 1.50703 * 109.47126 * 149.99876 * 10 9 7 13 13 H 1.08003 * 119.99742 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99873 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00433 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99975 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47197 * 89.99842 * 16 14 12 18 18 H 1.48495 * 109.47693 * 210.00055 * 16 14 12 19 19 H 1.48508 * 109.46868 * 330.00146 * 16 14 12 20 20 C 1.53000 * 109.47046 * 269.99575 * 10 9 7 21 21 C 1.53007 * 117.49549 * 128.74815 * 20 10 9 22 22 C 1.53001 * 117.49532 * 60.09119 * 20 10 9 23 23 C 1.47816 * 134.45074 * 359.87157 * 4 2 1 24 24 H 1.08997 * 109.46892 * 240.00152 * 1 2 3 25 25 H 1.08999 * 109.46746 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46992 * 119.99545 * 1 2 3 27 27 H 1.09005 * 113.76939 * 41.06210 * 5 4 2 28 28 H 1.09001 * 113.87686 * 269.67472 * 5 4 2 29 29 H 1.09000 * 113.74080 * 269.15147 * 6 5 4 30 30 H 0.97001 * 120.00323 * 179.97438 * 15 14 12 31 31 H 1.08998 * 115.55045 * 274.41989 * 20 10 9 32 32 H 1.08997 * 117.49929 * 359.97438 * 21 20 10 33 33 H 1.08997 * 117.49703 * 145.02482 * 21 20 10 34 34 H 1.09002 * 117.49861 * 214.97615 * 22 20 10 35 35 H 1.09001 * 117.50171 * 359.97343 * 22 20 10 36 36 H 1.08997 * 113.77041 * 90.37466 * 23 4 2 37 37 H 1.09002 * 113.83259 * 318.91540 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6098 -1.5364 0.0002 6 6 3.1597 -2.8616 0.6416 7 6 3.8594 -4.0741 0.0837 8 8 4.7125 -3.9436 -0.7618 9 8 3.5348 -5.2991 0.5261 10 6 4.2492 -6.4210 -0.0563 11 1 5.2506 -6.1030 -0.3464 12 6 4.3489 -7.5331 0.9559 13 1 3.9179 -7.4092 1.9385 14 6 4.9892 -8.7091 0.6272 15 7 5.5126 -8.8605 -0.5697 16 14 5.1134 -10.0873 1.8821 17 1 3.9356 -10.9825 1.7523 18 1 6.3552 -10.8652 1.6418 19 1 5.1478 -9.5098 3.2498 20 6 3.4952 -6.9207 -1.2903 21 6 4.2910 -7.0820 -2.5871 22 6 3.2902 -5.9330 -2.4407 23 6 1.7849 -2.5912 0.0035 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 4.2236 -0.9177 0.6549 28 1 4.0351 -1.6530 -0.9966 29 1 3.1499 -2.8406 1.7314 30 1 5.9635 -9.6877 -0.8008 31 1 2.6989 -7.6391 -1.0957 32 1 5.3516 -6.8318 -2.5612 33 1 4.0180 -7.9063 -3.2458 34 1 2.3592 -6.0020 -3.0033 35 1 3.6921 -4.9272 -2.3182 36 1 1.6715 -3.0178 -0.9931 37 1 0.9441 -2.8131 0.6608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:28 Heat of formation + Delta-G solvation = -61.843588 kcal Electronic energy + Delta-G solvation = -20541.077091 eV Core-core repulsion = 17285.858577 eV Total energy + Delta-G solvation = -3255.218513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76972 -39.36635 -37.70800 -36.28104 -34.98217 -32.70291 -31.30871 -29.07997 -27.79527 -26.29153 -24.24657 -22.89497 -21.32120 -20.19773 -19.25649 -19.07676 -17.60951 -17.09238 -16.58803 -16.26460 -15.80894 -15.34664 -14.90381 -14.53684 -14.04077 -13.79720 -13.20588 -12.99584 -12.94021 -12.71918 -12.45737 -12.37502 -12.05352 -11.57958 -11.39457 -11.19897 -11.04828 -10.99116 -10.48712 -10.32978 -10.09777 -9.88888 -9.73018 -9.44667 -9.10059 -8.87442 -8.72285 -8.48328 -6.20180 -4.28568 2.46369 2.59654 2.73819 3.21891 3.28146 3.30564 3.53013 4.16395 4.29723 4.31931 4.75813 4.91503 5.00476 5.02912 5.12637 5.17978 5.23556 5.32664 5.48041 5.52643 5.62378 5.74787 5.87801 5.96689 6.09192 6.31763 6.46446 6.60481 6.94366 7.08251 7.19376 7.32629 7.50257 7.56094 7.79183 7.98592 8.03801 8.51946 8.81872 9.36496 10.86424 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.032528 B = 0.004398 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.584963 B = 6365.070953 C = 6700.042334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.534 3.466 3 O -0.550 6.550 4 N -0.648 5.648 5 C 0.126 3.874 6 C -0.124 4.124 7 C 0.464 3.536 8 O -0.512 6.512 9 O -0.347 6.347 10 C 0.248 3.752 11 H 0.049 0.951 12 C -0.530 4.530 13 H 0.069 0.931 14 C 0.070 3.930 15 N -0.872 5.872 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.230 4.230 23 C 0.122 3.878 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 9.421 0.522 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.325 3.675 3 O -0.427 6.427 4 N -0.385 5.385 5 C 0.004 3.996 6 C -0.144 4.144 7 C 0.306 3.694 8 O -0.402 6.402 9 O -0.262 6.262 10 C 0.196 3.804 11 H 0.067 0.933 12 C -0.567 4.567 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.508 5.508 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.267 4.267 23 C 0.000 4.000 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.498 10.031 0.149 13.148 hybrid contribution 0.142 -1.102 0.395 1.180 sum -8.356 8.929 0.545 12.241 Atomic orbital electron populations 1.21866 0.91192 1.05296 1.04395 1.20493 0.90257 0.81575 0.75151 1.90727 1.70957 1.30454 1.50606 1.50094 1.09172 1.05544 1.73672 1.23106 0.83385 0.90791 1.02311 1.23010 0.96702 0.91483 1.03238 1.22803 0.80901 0.85774 0.79928 1.90601 1.31433 1.87178 1.31008 1.86492 1.62240 1.15031 1.62485 1.20258 0.90195 0.79620 0.90334 0.93319 1.20898 1.38189 0.98480 0.99167 0.91262 1.24872 0.94701 0.98160 0.95738 1.70037 1.35382 1.26425 1.18973 0.86361 0.77607 0.81365 0.81297 1.20441 1.21041 1.19667 1.22611 1.01531 0.99475 0.89755 1.22366 0.96862 0.97237 0.99559 1.23282 1.00954 0.96582 1.05893 1.23175 0.96565 0.78565 1.01731 0.89311 0.88970 0.89387 0.89198 0.87973 0.84952 0.92575 0.89274 0.89311 0.90753 0.91023 0.88931 0.88624 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.07 36.01 0.36 -0.95 16 2 C 0.53 6.73 8.17 -10.99 -0.09 6.64 16 3 O -0.55 -9.28 17.81 5.55 0.10 -9.18 16 4 N -0.65 -7.73 3.61 -178.23 -0.64 -8.37 16 5 C 0.13 1.61 8.17 -2.97 -0.02 1.59 16 6 C -0.12 -1.59 4.44 -90.83 -0.40 -2.00 16 7 C 0.46 8.42 6.71 36.01 0.24 8.66 16 8 O -0.51 -10.61 12.96 -18.75 -0.24 -10.86 16 9 O -0.35 -7.41 9.85 -39.25 -0.39 -7.80 16 10 C 0.25 6.15 2.25 -27.88 -0.06 6.08 16 11 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 12 C -0.53 -14.04 8.88 -34.44 -0.31 -14.35 16 13 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 14 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 15 N -0.87 -23.41 11.43 55.43 0.63 -22.78 16 16 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.11 -2.65 4.47 -90.62 -0.41 -3.05 16 21 C -0.12 -2.71 9.04 -26.69 -0.24 -2.95 16 22 C -0.23 -4.60 9.80 -26.69 -0.26 -4.86 16 23 C 0.12 1.27 8.18 -2.83 -0.02 1.25 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.10 1.41 7.43 -51.93 -0.39 1.02 16 29 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.09 2.12 8.11 -51.93 -0.42 1.70 16 32 H 0.09 2.11 8.05 -51.93 -0.42 1.69 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.89 5.37 -51.93 -0.28 1.62 16 36 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -31.20 317.21 -7.30 -38.49 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.21 Total: 2.67 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.31 Total: -2.20 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: -0.01 Total: -31.15 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.53 Total: -27.83 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.20 -7.30 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.351 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds