Wall clock time and date at job start Mon Mar 30 2020 00:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99916 * 2 1 4 4 N 1.34776 * 120.00515 * 179.97438 * 2 1 3 5 5 C 1.47574 * 134.49671 * 179.97438 * 4 2 1 6 6 C 1.53949 * 86.11466 * 155.35979 * 5 4 2 7 7 C 1.50709 * 113.73856 * 137.95538 * 6 5 4 8 8 O 1.20821 * 120.00117 * 1.92195 * 7 6 5 9 9 O 1.34226 * 119.99734 * 181.92691 * 7 6 5 10 10 C 1.45200 * 116.99763 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47097 * 29.99851 * 10 9 7 12 12 C 1.50703 * 109.47126 * 149.99876 * 10 9 7 13 13 H 1.08003 * 119.99742 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99873 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00433 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99975 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47197 * 89.99842 * 16 14 12 18 18 H 1.48495 * 109.47693 * 210.00055 * 16 14 12 19 19 H 1.48508 * 109.46868 * 330.00146 * 16 14 12 20 20 C 1.53000 * 109.47046 * 269.99575 * 10 9 7 21 21 C 1.53007 * 117.49549 * 128.74815 * 20 10 9 22 22 C 1.53001 * 117.49532 * 60.09119 * 20 10 9 23 23 C 1.47816 * 134.45074 * 359.87157 * 4 2 1 24 24 H 1.08997 * 109.46892 * 240.00152 * 1 2 3 25 25 H 1.08999 * 109.46746 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46992 * 119.99545 * 1 2 3 27 27 H 1.09005 * 113.76939 * 41.06210 * 5 4 2 28 28 H 1.09001 * 113.87686 * 269.67472 * 5 4 2 29 29 H 1.09000 * 113.74080 * 269.15147 * 6 5 4 30 30 H 0.97001 * 120.00323 * 179.97438 * 15 14 12 31 31 H 1.08998 * 115.55045 * 274.41989 * 20 10 9 32 32 H 1.08997 * 117.49929 * 359.97438 * 21 20 10 33 33 H 1.08997 * 117.49703 * 145.02482 * 21 20 10 34 34 H 1.09002 * 117.49861 * 214.97615 * 22 20 10 35 35 H 1.09001 * 117.50171 * 359.97343 * 22 20 10 36 36 H 1.08997 * 113.77041 * 90.37466 * 23 4 2 37 37 H 1.09002 * 113.83259 * 318.91540 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6098 -1.5364 0.0002 6 6 3.1597 -2.8616 0.6416 7 6 3.8594 -4.0741 0.0837 8 8 4.7125 -3.9436 -0.7618 9 8 3.5348 -5.2991 0.5261 10 6 4.2492 -6.4210 -0.0563 11 1 5.2506 -6.1030 -0.3464 12 6 4.3489 -7.5331 0.9559 13 1 3.9179 -7.4092 1.9385 14 6 4.9892 -8.7091 0.6272 15 7 5.5126 -8.8605 -0.5697 16 14 5.1134 -10.0873 1.8821 17 1 3.9356 -10.9825 1.7523 18 1 6.3552 -10.8652 1.6418 19 1 5.1478 -9.5098 3.2498 20 6 3.4952 -6.9207 -1.2903 21 6 4.2910 -7.0820 -2.5871 22 6 3.2902 -5.9330 -2.4407 23 6 1.7849 -2.5912 0.0035 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 4.2236 -0.9177 0.6549 28 1 4.0351 -1.6530 -0.9966 29 1 3.1499 -2.8406 1.7314 30 1 5.9635 -9.6877 -0.8008 31 1 2.6989 -7.6391 -1.0957 32 1 5.3516 -6.8318 -2.5612 33 1 4.0180 -7.9063 -3.2458 34 1 2.3592 -6.0020 -3.0033 35 1 3.6921 -4.9272 -2.3182 36 1 1.6715 -3.0178 -0.9931 37 1 0.9441 -2.8131 0.6608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:28 Heat of formation + Delta-G solvation = -80.772311 kcal Electronic energy + Delta-G solvation = -20541.897902 eV Core-core repulsion = 17285.858577 eV Total energy + Delta-G solvation = -3256.039324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99108 -40.70859 -38.92054 -37.89260 -36.66480 -34.68073 -32.26159 -30.27073 -29.36423 -27.21636 -25.77649 -24.50532 -23.04048 -21.69355 -20.92218 -20.03728 -19.09730 -18.43902 -18.03883 -17.70109 -17.04236 -16.62827 -16.55493 -15.92149 -15.66904 -15.16046 -14.50661 -14.31150 -14.07693 -13.76242 -13.64248 -13.29105 -13.23428 -13.12941 -12.91476 -12.90708 -12.77252 -12.24439 -12.16432 -12.10937 -11.73774 -11.46729 -11.23094 -10.98481 -10.87145 -10.56663 -10.40077 -9.88541 -8.19138 -6.35628 1.29202 1.45224 1.45851 1.52518 1.55096 1.61155 2.12212 2.46084 3.08818 3.13182 3.25890 3.43595 3.81923 3.96095 4.12959 4.15841 4.30804 4.35467 4.44100 4.47383 4.48099 4.56630 4.66681 4.72448 4.78020 4.83773 4.97765 5.10825 5.15662 5.29705 5.43043 5.53097 5.59536 5.88696 6.17622 6.58158 6.67663 7.01091 7.03765 7.34431 8.86704 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.032528 B = 0.004398 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.584963 B = 6365.070953 C = 6700.042334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.528 3.472 3 O -0.602 6.602 4 N -0.645 5.645 5 C 0.119 3.881 6 C -0.115 4.115 7 C 0.462 3.538 8 O -0.542 6.542 9 O -0.353 6.353 10 C 0.254 3.746 11 H 0.007 0.993 12 C -0.554 4.554 13 H 0.066 0.934 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.971 3.029 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.195 4.195 23 C 0.133 3.867 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.156 0.844 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 9.292 1.129 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.321 3.679 3 O -0.484 6.484 4 N -0.381 5.381 5 C -0.003 4.003 6 C -0.135 4.135 7 C 0.306 3.694 8 O -0.433 6.433 9 O -0.269 6.269 10 C 0.200 3.800 11 H 0.025 0.975 12 C -0.592 4.592 13 H 0.084 0.916 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.795 3.205 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.149 4.149 21 C -0.166 4.166 22 C -0.232 4.232 23 C 0.012 3.988 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.174 0.826 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.869 9.900 0.756 14.721 hybrid contribution 0.929 -1.001 0.189 1.379 sum -9.939 8.898 0.945 13.374 Atomic orbital electron populations 1.21904 0.87037 1.06263 1.06548 1.21436 0.92105 0.80650 0.73718 1.90706 1.72350 1.32252 1.53044 1.50129 1.08576 1.06311 1.73080 1.23066 0.84548 0.91043 1.01689 1.23129 0.97875 0.88131 1.04376 1.23813 0.80506 0.85871 0.79249 1.90592 1.32883 1.87371 1.32501 1.86477 1.61946 1.15694 1.62756 1.19845 0.88899 0.80310 0.90901 0.97528 1.21199 1.38865 0.99562 0.99568 0.91603 1.25669 0.94104 1.00266 0.97537 1.70155 1.35591 1.26935 1.20449 0.85364 0.77726 0.78387 0.78992 1.19526 1.20830 1.19232 1.22403 1.01688 1.00974 0.89809 1.22282 0.95857 0.98959 0.99549 1.23274 1.01289 0.95255 1.03348 1.23325 0.96026 0.77022 1.02466 0.86699 0.88760 0.87338 0.88964 0.89419 0.82623 0.92510 0.90026 0.91952 0.89517 0.87586 0.89477 0.88412 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.07 71.24 0.72 -1.20 16 2 C 0.53 12.26 8.17 87.66 0.72 12.97 16 3 O -0.60 -20.07 17.81 -3.05 -0.05 -20.13 16 4 N -0.65 -13.98 3.61 -836.17 -3.02 -17.00 16 5 C 0.12 2.97 8.17 86.49 0.71 3.68 16 6 C -0.12 -2.75 4.44 -10.87 -0.05 -2.80 16 7 C 0.46 16.66 6.71 71.24 0.48 17.14 16 8 O -0.54 -23.01 12.96 21.98 0.28 -22.73 16 9 O -0.35 -15.09 9.85 -51.38 -0.51 -15.59 16 10 C 0.25 12.86 2.25 29.85 0.07 12.93 16 11 H 0.01 0.40 6.91 -2.39 -0.02 0.39 16 12 C -0.55 -29.85 8.88 25.60 0.23 -29.62 16 13 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 14 C 0.03 1.39 5.30 84.65 0.45 1.84 16 15 N -0.90 -48.83 11.43 21.44 0.25 -48.59 16 16 Si 0.97 41.45 29.54 68.60 2.03 43.47 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 C -0.13 -6.01 4.47 -10.79 -0.05 -6.06 16 21 C -0.13 -5.73 9.04 30.62 0.28 -5.45 16 22 C -0.19 -7.56 9.80 30.62 0.30 -7.26 16 23 C 0.13 2.33 8.18 86.45 0.71 3.03 16 24 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 1.14 8.12 -2.39 -0.02 1.12 16 26 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.09 2.45 7.43 -2.39 -0.02 2.43 16 29 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.08 3.88 8.11 -2.39 -0.02 3.86 16 32 H 0.06 3.07 8.05 -2.39 -0.02 3.06 16 33 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.09 3.51 5.37 -2.39 -0.01 3.50 16 36 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 37 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.22 317.21 4.59 -65.62 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.07 Total: 15.74 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.55 Total: -0.81 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -2.78 Total: -65.59 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -0.28 Total: -58.45 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -70.22 4.59 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.148 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds